FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4150, 127 aa
  1>>>pF1KB4150 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6350+/-0.000267; mu= 5.2132+/- 0.017
 mean_var=88.6650+/-17.219, 0's: 0 Z-trim(121.1): 4  B-trim: 248 in 1/52
 Lambda= 0.136207
 statistics sampled from 37297 (37301) to 37297 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.437), width:  16
 Scan time:  5.310

The best scores are:                                      opt bits E(85289)
XP_011512246 (OMIM: 600503) PREDICTED: activated R ( 127)  823 170.4   7e-43
XP_016864476 (OMIM: 600503) PREDICTED: activated R ( 127)  823 170.4   7e-43
XP_016864475 (OMIM: 600503) PREDICTED: activated R ( 127)  823 170.4   7e-43
NP_006704 (OMIM: 600503) activated RNA polymerase  ( 127)  823 170.4   7e-43


>>XP_011512246 (OMIM: 600503) PREDICTED: activated RNA p  (127 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 890.8  bits: 170.4 E(85289): 7e-43
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB4 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
               70        80        90       100       110       120

              
pF1KB4 DDAVRKL
       :::::::
XP_011 DDAVRKL
              

>>XP_016864476 (OMIM: 600503) PREDICTED: activated RNA p  (127 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 890.8  bits: 170.4 E(85289): 7e-43
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB4 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
               70        80        90       100       110       120

              
pF1KB4 DDAVRKL
       :::::::
XP_016 DDAVRKL
              

>>XP_016864475 (OMIM: 600503) PREDICTED: activated RNA p  (127 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 890.8  bits: 170.4 E(85289): 7e-43
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB4 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
               70        80        90       100       110       120

              
pF1KB4 DDAVRKL
       :::::::
XP_016 DDAVRKL
              

>>NP_006704 (OMIM: 600503) activated RNA polymerase II t  (127 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 890.8  bits: 170.4 E(85289): 7e-43
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB4 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
               70        80        90       100       110       120

              
pF1KB4 DDAVRKL
       :::::::
NP_006 DDAVRKL
              




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:31:52 2016 done: Thu Nov  3 14:31:53 2016
 Total Scan time:  5.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]