Result of FASTA (ccds) for
pF1KB4155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4155, 299 aa
1>>>pF1KB4155 299 - 299 aa - 299 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2493+/-0.00117; mu= 6.3833+/- 0.069
mean_var=163.6167+/-34.558, 0's: 0 Z-trim(106.7): 141 B-trim: 4 in 1/50
Lambda= 0.100268
statistics sampled from 8996 (9148) to 8996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.281), width: 16
Scan time: 2.150
The best scores are: opt bits E(32554)
CCDS1213.1 F11R gene_id:50848|Hs108|chr1 ( 299) 1950 294.3 7.5e-80
CCDS42911.1 JAM2 gene_id:58494|Hs108|chr21 ( 298) 563 93.7 1.9e-19
CCDS8494.2 JAM3 gene_id:83700|Hs108|chr11 ( 310) 549 91.6 7.8e-19
CCDS58787.1 JAM2 gene_id:58494|Hs108|chr21 ( 312) 528 88.6 6.4e-18
CCDS58788.1 JAM2 gene_id:58494|Hs108|chr21 ( 262) 519 87.2 1.4e-17
CCDS55799.1 JAM3 gene_id:83700|Hs108|chr11 ( 259) 372 66.0 3.5e-11
>>CCDS1213.1 F11R gene_id:50848|Hs108|chr1 (299 aa)
initn: 1950 init1: 1950 opt: 1950 Z-score: 1547.1 bits: 294.3 E(32554): 7.5e-80
Smith-Waterman score: 1950; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIV
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 AAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
250 260 270 280 290
>>CCDS42911.1 JAM2 gene_id:58494|Hs108|chr21 (298 aa)
initn: 417 init1: 319 opt: 563 Z-score: 462.8 bits: 93.7 E(32554): 1.9e-19
Smith-Waterman score: 563; 35.2% identity (64.5% similar) in 301 aa overlap (5-299:2-298)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPE---VRIPENNPVKLSCAYSGFS-
:. :. : :..: :. .:. .. :. . : : . . :.: .
CCDS42 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE--E
: :.::: : .. .: :.. . .....:. .. .: .:.::: :.: : : :: :
CCDS42 SSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP
:.. : : : ::: :. :. ..:::: :. . : :....:.: ::::::::: .
CCDS42 QGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVER
::. .::::..: :: : :. .: :::::::::::. : . ::.. .
CCDS42 ENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 NVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQT
:.. :.:::.:. ..... .:. .: .:.: .:. . .:. :. .. ::..::.:
CCDS42 NISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHT
240 250 260 270 280 290
pF1KB4 SSFLV
.::..
CCDS42 KSFII
>>CCDS8494.2 JAM3 gene_id:83700|Hs108|chr11 (310 aa)
initn: 374 init1: 129 opt: 549 Z-score: 451.6 bits: 91.6 E(32554): 7.8e-19
Smith-Waterman score: 549; 33.6% identity (65.1% similar) in 295 aa overlap (15-299:18-310)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAY--SGF
:.: .:. . .:.:...::. . : . :.::: :
CCDS84 MALRRPPRLRLCARLPDFFLLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGTYTC-MVSE
:.::.::: : . : : ..::: .. :. .: :.. . .:::.:.. : : .:..
CCDS84 SDPRIEWKKIQDEQTTYVFFDNKIQGDLAGRAEILGKTSLKIWNVTRRDSALYRCEVVAR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM
. . :. ..: : : : :. .:... .:. :.: :.:..: : .:.:... . .
CCDS84 NDRKEIDEIVIELTVQVKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 PTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE
::. ... : :::. :: :: ::: . .:.:.: : : : :. . .::. .
CCDS84 PTDSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQ-EMEVYD
190 200 210 220 230
240 250 260 270 280
pF1KB4 RNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSA----RS--
:.: :...:::.: .:.....:: :: ::.: .:. : : ..:.. :.
CCDS84 LNIGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNP-GKPDGVNYIRTDE
240 250 260 270 280 290
290
pF1KB4 EGEFKQTSSFLV
::.:.. :::..
CCDS84 EGDFRHKSSFVI
300 310
>>CCDS58787.1 JAM2 gene_id:58494|Hs108|chr21 (312 aa)
initn: 379 init1: 319 opt: 528 Z-score: 435.1 bits: 88.6 E(32554): 6.4e-18
Smith-Waterman score: 528; 35.9% identity (63.8% similar) in 290 aa overlap (5-282:2-287)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHS-SEPE----VRIPENNPVKLSCAYSGF
:. :. : :..: :. .::: ... : :. : : . . :.:
CCDS58 MARRSRHRLLLLLLRYLV--VALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKK
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 S-SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE-
. : :.::: : .. .: :.. . .....:. .. .: .:.::: :.: : : ::
CCDS58 TVSSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 -EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV
: :.. : : : ::: :. :. ..:::: :. . : :....:.: :::::::::
CCDS58 SEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV
. ::. .::::..: :: : :. .: :::::::::::. : . ::..
CCDS58 LLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVD
180 190 200 210 220 230
240 250 260 270 280
pF1KB4 ERNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRT----KKGTSSKKVIYSQPSARSE
. :.. :.:::.:. ..... .:. .: .:.:.. :...::: . .:.
CCDS58 DLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENVQWLT
240 250 260 270 280 290
290
pF1KB4 GEFKQTSSFLV
CCDS58 PVIPALWKAAAGGSRGQEF
300 310
>>CCDS58788.1 JAM2 gene_id:58494|Hs108|chr21 (262 aa)
initn: 392 init1: 319 opt: 519 Z-score: 429.1 bits: 87.2 E(32554): 1.4e-17
Smith-Waterman score: 520; 38.2% identity (66.9% similar) in 251 aa overlap (51-299:26-262)
30 40 50 60 70 80
pF1KB4 LCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT
:: :::.:. :: ... : :..
CCDS58 MARRSRHRLLLLLLRYLVVALGYHKAY-GFSAPK-----DQ-QVVTAVEYQG---
10 20 30 40
90 100 110 120 130
pF1KB4 ASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE--EGGNSYGEVKVKLIVLVPPSKPTVN
....:. .. .: .:.::: :.: : : :: : :.. : : : ::: :. :. .
CCDS58 -DFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCE
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB4 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV
.:::: :. . : :....:.: ::::::::: . ::. .::::..: :: :
CCDS58 VPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQ
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB4 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW
:. .: :::::::::::. : . ::.. . :.. :.:::.:. ..... .:.
CCDS58 FNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDLNISGIIAAVVVVALVISVCGLGVC
170 180 190 200 210 220
260 270 280 290
pF1KB4 FAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
.: .:.: .:. . .:. :. .. ::..::.:.::..
CCDS58 YAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHTKSFII
230 240 250 260
>>CCDS55799.1 JAM3 gene_id:83700|Hs108|chr11 (259 aa)
initn: 391 init1: 129 opt: 372 Z-score: 314.2 bits: 66.0 E(32554): 3.5e-11
Smith-Waterman score: 389; 29.4% identity (54.6% similar) in 293 aa overlap (15-299:18-259)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAY--SGF
:.: .:. . .:.:...::. . : . :.::: :
CCDS55 MALRRPPRLRLCARLPDFFLLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG
:.::.::: : . : : ..:::
CCDS55 SDPRIEWKKIQDEQTTYVFFDNKIQ-----------------------------------
70 80
120 130 140 150 160 170
pF1KB4 GNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT
: : :. .:... .:. :.: :.:..: : .:.:... . .::
CCDS55 --------------VKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPLPT
90 100 110 120 130
180 190 200 210 220 230
pF1KB4 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERN
. ... : :::. :: :: ::: . .:.:.: : : : :. . .::. . :
CCDS55 DSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQ-EMEVYDLN
140 150 160 170 180 190
240 250 260 270 280
pF1KB4 VGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSA----RS--EG
.: :...:::.: .:.....:: :: ::.: .:. : : ..:.. :. ::
CCDS55 IGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNP-GKPDGVNYIRTDEEG
200 210 220 230 240
290
pF1KB4 EFKQTSSFLV
.:.. :::..
CCDS55 DFRHKSSFVI
250
299 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:49:51 2016 done: Fri Nov 4 20:49:51 2016
Total Scan time: 2.150 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]