Result of FASTA (omim) for
pF1KB4155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4155, 299 aa
1>>>pF1KB4155 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4640+/-0.000529; mu= -6.2669+/- 0.032
mean_var=274.6747+/-57.211, 0's: 0 Z-trim(113.8): 267 B-trim: 5 in 1/55
Lambda= 0.077386
statistics sampled from 23055 (23350) to 23055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.274), width: 16
Scan time: 5.700
The best scores are: opt bits E(85289)
NP_058642 (OMIM: 605721) junctional adhesion molec ( 299) 1950 231.5 1.5e-60
NP_067042 (OMIM: 606870) junctional adhesion molec ( 298) 563 76.7 6.3e-14
NP_116190 (OMIM: 606871,613730) junctional adhesio ( 310) 549 75.1 1.9e-13
NP_001257337 (OMIM: 606870) junctional adhesion mo ( 312) 528 72.8 9.7e-13
NP_001257336 (OMIM: 606870) junctional adhesion mo ( 262) 519 71.7 1.7e-12
NP_001192258 (OMIM: 606871,613730) junctional adhe ( 259) 372 55.3 1.5e-07
NP_005805 (OMIM: 602171) cell surface A33 antigen ( 319) 267 43.7 0.00059
NP_001316849 (OMIM: 606011) V-set and immunoglobul ( 284) 264 43.3 0.00068
NP_055127 (OMIM: 606011) V-set and immunoglobulin ( 327) 264 43.3 0.00075
XP_016855494 (OMIM: 602171) PREDICTED: cell surfac ( 211) 236 40.0 0.0048
>>NP_058642 (OMIM: 605721) junctional adhesion molecule (299 aa)
initn: 1950 init1: 1950 opt: 1950 Z-score: 1207.9 bits: 231.5 E(85289): 1.5e-60
Smith-Waterman score: 1950; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIV
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 AAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 AAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
250 260 270 280 290
>>NP_067042 (OMIM: 606870) junctional adhesion molecule (298 aa)
initn: 417 init1: 319 opt: 563 Z-score: 371.1 bits: 76.7 E(85289): 6.3e-14
Smith-Waterman score: 563; 35.2% identity (64.5% similar) in 301 aa overlap (5-299:2-298)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPE---VRIPENNPVKLSCAYSGFS-
:. :. : :..: :. .:. .. :. . : : . . :.: .
NP_067 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE--E
: :.::: : .. .: :.. . .....:. .. .: .:.::: :.: : : :: :
NP_067 SSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP
:.. : : : ::: :. :. ..:::: :. . : :....:.: ::::::::: .
NP_067 QGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVER
::. .::::..: :: : :. .: :::::::::::. : . ::.. .
NP_067 ENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 NVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQT
:.. :.:::.:. ..... .:. .: .:.: .:. . .:. :. .. ::..::.:
NP_067 NISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHT
240 250 260 270 280 290
pF1KB4 SSFLV
.::..
NP_067 KSFII
>>NP_116190 (OMIM: 606871,613730) junctional adhesion mo (310 aa)
initn: 374 init1: 129 opt: 549 Z-score: 362.4 bits: 75.1 E(85289): 1.9e-13
Smith-Waterman score: 549; 33.6% identity (65.1% similar) in 295 aa overlap (15-299:18-310)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAY--SGF
:.: .:. . .:.:...::. . : . :.::: :
NP_116 MALRRPPRLRLCARLPDFFLLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGTYTC-MVSE
:.::.::: : . : : ..::: .. :. .: :.. . .:::.:.. : : .:..
NP_116 SDPRIEWKKIQDEQTTYVFFDNKIQGDLAGRAEILGKTSLKIWNVTRRDSALYRCEVVAR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM
. . :. ..: : : : :. .:... .:. :.: :.:..: : .:.:... . .
NP_116 NDRKEIDEIVIELTVQVKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 PTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE
::. ... : :::. :: :: ::: . .:.:.: : : : :. . .::. .
NP_116 PTDSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQ-EMEVYD
190 200 210 220 230
240 250 260 270 280
pF1KB4 RNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSA----RS--
:.: :...:::.: .:.....:: :: ::.: .:. : : ..:.. :.
NP_116 LNIGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNP-GKPDGVNYIRTDE
240 250 260 270 280 290
290
pF1KB4 EGEFKQTSSFLV
::.:.. :::..
NP_116 EGDFRHKSSFVI
300 310
>>NP_001257337 (OMIM: 606870) junctional adhesion molecu (312 aa)
initn: 379 init1: 319 opt: 528 Z-score: 349.7 bits: 72.8 E(85289): 9.7e-13
Smith-Waterman score: 528; 35.9% identity (63.8% similar) in 290 aa overlap (5-282:2-287)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHS-SEPE----VRIPENNPVKLSCAYSGF
:. :. : :..: :. .::: ... : :. : : . . :.:
NP_001 MARRSRHRLLLLLLRYLV--VALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKK
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 S-SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE-
. : :.::: : .. .: :.. . .....:. .. .: .:.::: :.: : : ::
NP_001 TVSSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 -EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV
: :.. : : : ::: :. :. ..:::: :. . : :....:.: :::::::::
NP_001 SEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV
. ::. .::::..: :: : :. .: :::::::::::. : . ::..
NP_001 LLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVD
180 190 200 210 220 230
240 250 260 270 280
pF1KB4 ERNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRT----KKGTSSKKVIYSQPSARSE
. :.. :.:::.:. ..... .:. .: .:.:.. :...::: . .:.
NP_001 DLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENVQWLT
240 250 260 270 280 290
290
pF1KB4 GEFKQTSSFLV
NP_001 PVIPALWKAAAGGSRGQEF
300 310
>>NP_001257336 (OMIM: 606870) junctional adhesion molecu (262 aa)
initn: 392 init1: 319 opt: 519 Z-score: 345.2 bits: 71.7 E(85289): 1.7e-12
Smith-Waterman score: 520; 38.2% identity (66.9% similar) in 251 aa overlap (51-299:26-262)
30 40 50 60 70 80
pF1KB4 LCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT
:: :::.:. :: ... : :..
NP_001 MARRSRHRLLLLLLRYLVVALGYHKAY-GFSAPK-----DQ-QVVTAVEYQG---
10 20 30 40
90 100 110 120 130
pF1KB4 ASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE--EGGNSYGEVKVKLIVLVPPSKPTVN
....:. .. .: .:.::: :.: : : :: : :.. : : : ::: :. :. .
NP_001 -DFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCE
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB4 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV
.:::: :. . : :....:.: ::::::::: . ::. .::::..: :: :
NP_001 VPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQ
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB4 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW
:. .: :::::::::::. : . ::.. . :.. :.:::.:. ..... .:.
NP_001 FNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDLNISGIIAAVVVVALVISVCGLGVC
170 180 190 200 210 220
260 270 280 290
pF1KB4 FAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQTSSFLV
.: .:.: .:. . .:. :. .. ::..::.:.::..
NP_001 YAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHTKSFII
230 240 250 260
>>NP_001192258 (OMIM: 606871,613730) junctional adhesion (259 aa)
initn: 391 init1: 129 opt: 372 Z-score: 256.6 bits: 55.3 E(85289): 1.5e-07
Smith-Waterman score: 389; 29.4% identity (54.6% similar) in 293 aa overlap (15-299:18-259)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAY--SGF
:.: .:. . .:.:...::. . : . :.::: :
NP_001 MALRRPPRLRLCARLPDFFLLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG
:.::.::: : . : : ..:::
NP_001 SDPRIEWKKIQDEQTTYVFFDNKIQ-----------------------------------
70 80
120 130 140 150 160 170
pF1KB4 GNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT
: : :. .:... .:. :.: :.:..: : .:.:... . .::
NP_001 --------------VKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPLPT
90 100 110 120 130
180 190 200 210 220 230
pF1KB4 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERN
. ... : :::. :: :: ::: . .:.:.: : : : :. . .::. . :
NP_001 DSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQ-EMEVYDLN
140 150 160 170 180 190
240 250 260 270 280
pF1KB4 VGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSA----RS--EG
.: :...:::.: .:.....:: :: ::.: .:. : : ..:.. :. ::
NP_001 IGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNP-GKPDGVNYIRTDEEG
200 210 220 230 240
290
pF1KB4 EFKQTSSFLV
.:.. :::..
NP_001 DFRHKSSFVI
250
>>NP_005805 (OMIM: 602171) cell surface A33 antigen prec (319 aa)
initn: 223 init1: 153 opt: 267 Z-score: 192.1 bits: 43.7 E(85289): 0.00059
Smith-Waterman score: 330; 28.0% identity (58.5% similar) in 289 aa overlap (21-283:12-284)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSL--ALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSP
::.. .. ...:.. . .: ... : : :.: .:
NP_005 MVGKMWPVLWTLCAVRVTVDAISVETPQDVLRASQGKSVTLPCTYHTSTSS
10 20 30 40 50
60 70 80 90 100
pF1KB4 R---VEW-KFDQGDTTRLVC--YNNKITAS---YEDRVTFL------PTGITFKSVTRED
: ..: :. : :.: ..:: :..::.. ..::. ..: :
NP_005 REGLIQWDKLLLTHTERVVIWPFSNKNYIHGELYKNRVSISNNAEQSDASITIDQLTMAD
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 TGTYTC---MVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP
.::: : ..:. ::. . .:.:.:::::::: .: . . ::: :::. ..:::
NP_005 NGTYECSVSLMSDLEGNT--KSRVRLLVLVPPSKPECGIEGETIIGNNIQLTCQSKEGSP
120 130 140 150 160
170 180 190 200 210
pF1KB4 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV-FDPLSASDTGEYSCEARNGYG
.:.: . .:. .: . .:..:. : . .:.. .: : : . : :
NP_005 TPQYSWKRYNILNQEQP-----------LAQPASGQPVSLKNISTDTSGYYICTSSNEEG
170 180 190 200 210
220 230 240 250 260 270
pF1KB4 TPMTSNAVRMEAVERNVGV---IVAAVLVTLILLGILVFGIWFAYSRGHFDRT--KKGTS
: . . .: ... ::.. :...:...::..::... ::. : : :. .
NP_005 TQFCNITVAVRSPSMNVALYVGIAVGVVAALIIIGIIIY---CCCCRGKDDNTEDKEDAR
220 230 240 250 260 270
280 290
pF1KB4 SKKVIYSQPSARSEGEFKQTSSFLV
.. : .:
NP_005 PNREAYEEPPEQLRELSREREEEDDYRQEEQRSTGRESPDHLDQ
280 290 300 310
>>NP_001316849 (OMIM: 606011) V-set and immunoglobulin d (284 aa)
initn: 169 init1: 100 opt: 264 Z-score: 190.9 bits: 43.3 E(85289): 0.00068
Smith-Waterman score: 316; 29.7% identity (60.5% similar) in 286 aa overlap (5-271:2-273)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGF--SSP
:.. .:: .:. .:: .:. . .:: . : .. ..:.:.:: .:
NP_001 MAELPGPFLCGALLG-FLCLSGLAVEVKVPTEP-LSTPLGKTAELTCTYSTSVGDSF
10 20 30 40 50
60 70 80 90 100
pF1KB4 RVEWKFDQ-----GDTTRLVCYNNK---ITASYEDRVTFL---PT-GI-TFK--SVTRED
.::.: : ... .. ..: :.: ::..: :: :. :.: .: :
NP_001 ALEWSFVQPGKPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSD
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 TGTYTCMVSEEGG-NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS
:::: :.:.. . : ..: ::::::.: . .....:. ..: :: ..:.:
NP_001 TGTYLCQVNNPPDFYTNGLGLINLTVLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM
:.: . : ..:: : : .:.: . ..:.:.. :: ...: : : : : .:.
NP_001 VYNWVRLG-TFPT-P------SPGSMVQDEVSGQLILTNLSLTSSGTYRCVATNQMGS--
180 190 200 210 220
230 240 250 260 270 280
pF1KB4 TSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW-FAYSRGHFDRTKKGTSSKKVIYS
.: . . ..: . : ...:.. .:::.:.... : : . .: ::
NP_001 ASCELTLSVTEPSQGRVAGALIG--VLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDL
230 240 250 260 270 280
290
pF1KB4 QPSARSEGEFKQTSSFLV
NP_001 R
>>NP_055127 (OMIM: 606011) V-set and immunoglobulin doma (327 aa)
initn: 169 init1: 100 opt: 264 Z-score: 190.1 bits: 43.3 E(85289): 0.00075
Smith-Waterman score: 316; 29.7% identity (60.5% similar) in 286 aa overlap (5-271:2-273)
10 20 30 40 50
pF1KB4 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGF--SSP
:.. .:: .:. .:: .:. . .:: . : .. ..:.:.:: .:
NP_055 MAELPGPFLCGALLG-FLCLSGLAVEVKVPTEP-LSTPLGKTAELTCTYSTSVGDSF
10 20 30 40 50
60 70 80 90 100
pF1KB4 RVEWKFDQ-----GDTTRLVCYNNK---ITASYEDRVTFL---PT-GI-TFK--SVTRED
.::.: : ... .. ..: :.: ::..: :: :. :.: .: :
NP_055 ALEWSFVQPGKPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSD
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 TGTYTCMVSEEGG-NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS
:::: :.:.. . : ..: ::::::.: . .....:. ..: :: ..:.:
NP_055 TGTYLCQVNNPPDFYTNGLGLINLTVLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM
:.: . : ..:: : : .:.: . ..:.:.. :: ...: : : : : .:.
NP_055 VYNWVRLG-TFPT-P------SPGSMVQDEVSGQLILTNLSLTSSGTYRCVATNQMGS--
180 190 200 210 220
230 240 250 260 270 280
pF1KB4 TSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIW-FAYSRGHFDRTKKGTSSKKVIYS
.: . . ..: . : ...:.. .:::.:.... : : . .: ::
NP_055 ASCELTLSVTEPSQGRVAGALIG--VLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDL
230 240 250 260 270 280
290
pF1KB4 QPSARSEGEFKQTSSFLV
NP_055 REDAIAPGISEHTCMRADSSKGFLERPSSASTVTTTKSKLPMVV
290 300 310 320
>>XP_016855494 (OMIM: 602171) PREDICTED: cell surface A3 (211 aa)
initn: 211 init1: 153 opt: 236 Z-score: 175.7 bits: 40.0 E(85289): 0.0048
Smith-Waterman score: 272; 30.5% identity (60.5% similar) in 190 aa overlap (103-283:3-176)
80 90 100 110 120
pF1KB4 VCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC---MVSEEGGNSYGEVKVKLIVL
:.::: : ..:. ::. . .:.:.::
XP_016 MADNGTYECSVSLMSDLEGNT--KSRVRLLVL
10 20 30
130 140 150 160 170 180
pF1KB4 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV
:::::: .: . . ::: :::. ..::: .:.: . .:. .: .
XP_016 VPPSKPECGIEGETIIGNNIQLTCQSKEGSPTPQYSWKRYNILNQEQP-----------L
40 50 60 70
190 200 210 220 230 240
pF1KB4 LNPTTGELV-FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVERNVGV---IVAAVLV
.:..:. : . .:.. .: : : . : :: . . .: ... ::.. :...:..
XP_016 AQPASGQPVSLKNISTDTSGYYICTSSNEEGTQFCNITVAVRSPSMNVALYVGIAVGVVA
80 90 100 110 120 130
250 260 270 280 290
pF1KB4 TLILLGILVFGIWFAYSRGHFDRT--KKGTSSKKVIYSQPSARSEGEFKQTSSFLV
.::..::... ::. : : :. . .. : .:
XP_016 ALIIIGIIIY---CCCCRGKDDNTEDKEDARPNREAYEEPPEQLRELSREREEEDDYRQE
140 150 160 170 180 190
XP_016 EQRSTGRESPDHLDQ
200 210
299 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:49:52 2016 done: Fri Nov 4 20:49:52 2016
Total Scan time: 5.700 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]