Result of FASTA (ccds) for
pF1KB4159
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4159, 145 aa
1>>>pF1KB4159 145 - 145 aa - 145 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6342+/-0.000846; mu= 4.9331+/- 0.050
mean_var=106.3531+/-22.327, 0's: 0 Z-trim(109.2): 116 B-trim: 0 in 0/50
Lambda= 0.124365
statistics sampled from 10609 (10736) to 10609 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.33), width: 16
Scan time: 1.510
The best scores are: opt bits E(32554)
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 1052 198.7 1e-51
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 1052 198.8 1.1e-51
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 1052 198.8 1.1e-51
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 948 180.1 4.5e-46
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 948 180.1 4.5e-46
CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 ( 158) 565 111.4 2.2e-25
CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 ( 227) 565 111.5 3e-25
CCDS58210.1 LMO3 gene_id:55885|Hs108|chr12 ( 167) 546 108.0 2.5e-24
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 539 106.7 5.8e-24
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 451 91.2 6.7e-19
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 451 91.2 6.8e-19
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 425 86.5 1.8e-17
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 424 86.3 1.9e-17
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 412 84.2 8.7e-17
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 412 84.2 8.8e-17
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 378 78.0 5.8e-15
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 377 77.9 6.2e-15
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 373 77.2 1.1e-14
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 373 77.2 1.1e-14
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 373 77.2 1.1e-14
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 371 76.8 1.4e-14
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 360 74.8 5.6e-14
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 357 74.3 7.3e-14
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 340 71.2 6e-13
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 340 71.2 6.1e-13
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 334 70.1 1.3e-12
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 334 70.1 1.3e-12
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 334 70.2 1.4e-12
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 334 70.2 1.4e-12
>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 1041.9 bits: 198.7 E(32554): 1e-51
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
CCDS86 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 (156 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 1041.5 bits: 198.8 E(32554): 1.1e-51
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:12-156)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
70 80 90 100 110 120
110 120 130 140
pF1KB4 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
::::::::::::::::::::::::::::::::::::
CCDS58 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150
>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 (163 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 1041.2 bits: 198.8 E(32554): 1.1e-51
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:19-163)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
::::::::::::::::::::::::::::::::::::::::::
CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
70 80 90 100 110 120
110 120 130 140
pF1KB4 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::::::::::::::::::::
CCDS58 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150 160
>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 (155 aa)
initn: 1053 init1: 948 opt: 948 Z-score: 940.7 bits: 180.1 E(32554): 4.5e-46
Smith-Waterman score: 948; 89.7% identity (93.8% similar) in 145 aa overlap (1-145:11-155)
10 20 30 40 50
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
:::::: : ::::::::::::::::::::::::::::::::::::::::
CCDS58 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 GSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQ
::::::::::::::::::::::.::::::::::::::::::::.::::::::::::::::
CCDS58 GSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQ
70 80 90 100 110 120
120 130 140
pF1KB4 RFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::: ::::: .. . ::.
CCDS58 RFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
130 140 150
>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 (156 aa)
initn: 1053 init1: 948 opt: 948 Z-score: 940.6 bits: 180.1 E(32554): 4.5e-46
Smith-Waterman score: 948; 89.7% identity (93.8% similar) in 145 aa overlap (1-145:12-156)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
:::::: : :::::::::::::::::::::::::::::::::::::::
CCDS44 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
:::::::::::::::::::::::.::::::::::::::::::::.:::::::::::::::
CCDS44 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
70 80 90 100 110 120
110 120 130 140
pF1KB4 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
::::::::::::::::::: ::::: .. . ::.
CCDS44 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
130 140 150
>>CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 (158 aa)
initn: 640 init1: 552 opt: 565 Z-score: 569.2 bits: 111.4 E(32554): 2.2e-25
Smith-Waterman score: 565; 60.3% identity (81.0% similar) in 121 aa overlap (13-133:30-150)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
:.::...: :::.:::.:.:::::::.: :
CCDS44 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 DCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCF
::::::: :: : . ::::::::::: : ::.:.: : :.::.::.::.::::.::
CCDS44 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
70 80 90 100 110 120
110 120 130 140
pF1KB4 ACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
: :...:::::...: :. :.:. : :
CCDS44 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
130 140 150
>>CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 (227 aa)
initn: 640 init1: 552 opt: 565 Z-score: 566.8 bits: 111.5 E(32554): 3e-25
Smith-Waterman score: 565; 60.3% identity (81.0% similar) in 121 aa overlap (13-133:99-219)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
:.::...: :::.:::.:.:::::::.:
CCDS78 PMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDL
70 80 90 100 110 120
50 60 70 80 90 100
pF1KB4 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
: ::::::: :: : . ::::::::::: : ::.:.: : :.::.::.::.::::.:
CCDS78 CGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC
130 140 150 160 170 180
110 120 130 140
pF1KB4 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
: : :...:::::...: :. :.:. : :
CCDS78 FKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
190 200 210 220
>>CCDS58210.1 LMO3 gene_id:55885|Hs108|chr12 (167 aa)
initn: 909 init1: 546 opt: 546 Z-score: 550.4 bits: 108.0 E(32554): 2.5e-24
Smith-Waterman score: 870; 78.0% identity (82.1% similar) in 168 aa overlap (1-145:1-167)
10 20 30 40 50
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE----VGSTLYT
::::::::::::::::::::::::::::::::::::::::::::::::: :: .:
CCDS58 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGS-IYI
10 20 30 40 50
60 70 80 90
pF1KB4 KA---NLILCRR----------DYLR------LFGVTGNCAACSKLIPAFEMVMRAKDNV
.: .. .: :. . ::::::::::::::::::::::::::::
CCDS58 HAAHTEIGICVTLEWPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNV
60 70 80 90 100 110
100 110 120 130 140
pF1KB4 YHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
120 130 140 150 160
>>CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 (165 aa)
initn: 546 init1: 508 opt: 539 Z-score: 543.7 bits: 106.7 E(32554): 5.8e-24
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (11-136:21-146)
10 20 30 40 50
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
: ::::. :: ::.:: :.:.::: ::::.::. .::..
CCDS71 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 GSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQ
:.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: ::.:. : .
CCDS71 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
70 80 90 100 110 120
120 130 140
pF1KB4 RFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
:. ::.: :. ..:. : .:.
CCDS71 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
130 140 150 160
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 404 init1: 227 opt: 451 Z-score: 452.8 bits: 91.2 E(32554): 6.7e-19
Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (1-144:51-190)
10 20 30
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALD
: ..:. :: ::::. ::.::: : :.:
CCDS30 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD
30 40 50 60 70
40 50 60 70 80
pF1KB4 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM
: :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : ::
CCDS30 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB4 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::.
CCDS30 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL
140 150 160 170 180 190
CCDS30 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
200 210 220 230 240 250
145 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:30:24 2016 done: Thu Nov 3 21:30:24 2016
Total Scan time: 1.510 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]