Result of FASTA (omim) for
pF1KB4176
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4176, 451 aa
1>>>pF1KB4176 451 - 451 aa - 451 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0548+/-0.000457; mu= 13.1897+/- 0.029
mean_var=72.1776+/-14.411, 0's: 0 Z-trim(108.5): 168 B-trim: 0 in 0/59
Lambda= 0.150964
statistics sampled from 16424 (16605) to 16424 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.543), E-opt: 0.2 (0.195), width: 16
Scan time: 8.370
The best scores are: opt bits E(85289)
XP_016863472 (OMIM: 103780,137140) PREDICTED: gamm ( 451) 2974 657.6 1.9e-188
NP_000798 (OMIM: 103780,137140) gamma-aminobutyric ( 451) 2974 657.6 1.9e-188
NP_001107647 (OMIM: 103780,137140) gamma-aminobuty ( 451) 2974 657.6 1.9e-188
XP_016863471 (OMIM: 103780,137140) PREDICTED: gamm ( 451) 2974 657.6 1.9e-188
XP_005248137 (OMIM: 103780,137140) PREDICTED: gamm ( 396) 2434 540.0 4.3e-153
NP_001317619 (OMIM: 103780,137140) gamma-aminobuty ( 511) 2350 521.7 1.7e-147
XP_011511977 (OMIM: 103780,137140) PREDICTED: gamm ( 511) 2350 521.7 1.7e-147
NP_001121115 (OMIM: 137160,611136,615744) gamma-am ( 456) 2255 501.0 2.6e-141
NP_000797 (OMIM: 137160,611136,615744) gamma-amino ( 456) 2255 501.0 2.6e-141
NP_001121120 (OMIM: 137160,611136,615744) gamma-am ( 456) 2255 501.0 2.6e-141
NP_001121117 (OMIM: 137160,611136,615744) gamma-am ( 456) 2255 501.0 2.6e-141
NP_001121116 (OMIM: 137160,611136,615744) gamma-am ( 456) 2255 501.0 2.6e-141
NP_000801 (OMIM: 137142) gamma-aminobutyric acid r ( 462) 2156 479.5 8.3e-135
NP_001158509 (OMIM: 137142) gamma-aminobutyric aci ( 462) 2156 479.5 8.3e-135
XP_005268315 (OMIM: 137142) PREDICTED: gamma-amino ( 462) 2156 479.5 8.3e-135
XP_006720522 (OMIM: 137142) PREDICTED: gamma-amino ( 462) 2156 479.5 8.3e-135
NP_000799 (OMIM: 305660) gamma-aminobutyric acid r ( 492) 1914 426.8 6.4e-119
NP_001273756 (OMIM: 103780,137140) gamma-aminobuty ( 456) 1810 404.1 3.9e-112
NP_001191195 (OMIM: 137141) gamma-aminobutyric aci ( 535) 1561 349.9 9.7e-96
NP_000800 (OMIM: 137141) gamma-aminobutyric acid r ( 554) 1561 349.9 1e-95
NP_000802 (OMIM: 137143) gamma-aminobutyric acid r ( 453) 1532 343.6 6.6e-94
XP_006724874 (OMIM: 305660) PREDICTED: gamma-amino ( 340) 1460 327.8 2.7e-89
XP_016877544 (OMIM: 137142) PREDICTED: gamma-amino ( 306) 1454 326.5 6e-89
XP_016877545 (OMIM: 137142) PREDICTED: gamma-amino ( 306) 1454 326.5 6e-89
NP_775807 (OMIM: 137166) gamma-aminobutyric acid r ( 465) 1224 276.5 1.1e-73
NP_000807 (OMIM: 137164,607681,611277) gamma-amino ( 467) 1210 273.4 8.8e-73
NP_944494 (OMIM: 137164,607681,611277) gamma-amino ( 475) 1201 271.5 3.5e-72
NP_150092 (OMIM: 600233) gamma-aminobutyric acid r ( 467) 1104 250.3 7.8e-66
XP_011519732 (OMIM: 600233) PREDICTED: gamma-amino ( 473) 1104 250.3 7.9e-66
XP_016863479 (OMIM: 137166) PREDICTED: gamma-amino ( 336) 987 224.8 2.7e-58
NP_000162 (OMIM: 138491,149400) glycine receptor s ( 449) 983 224.0 6.5e-58
XP_016864838 (OMIM: 138491,149400) PREDICTED: glyc ( 465) 983 224.0 6.7e-58
NP_001036008 (OMIM: 600421) glycine receptor subun ( 449) 974 222.0 2.5e-57
XP_011543797 (OMIM: 305990) PREDICTED: glycine rec ( 436) 973 221.8 2.8e-57
XP_011543798 (OMIM: 305990) PREDICTED: glycine rec ( 436) 973 221.8 2.8e-57
XP_006724550 (OMIM: 305990) PREDICTED: glycine rec ( 436) 973 221.8 2.8e-57
NP_001112357 (OMIM: 305990) glycine receptor subun ( 452) 973 221.8 2.9e-57
NP_002054 (OMIM: 305990) glycine receptor subunit ( 452) 973 221.8 2.9e-57
NP_001139512 (OMIM: 138491,149400) glycine recepto ( 457) 972 221.6 3.5e-57
NP_001112358 (OMIM: 305990) glycine receptor subun ( 452) 971 221.4 4e-57
XP_016884916 (OMIM: 305990) PREDICTED: glycine rec ( 452) 971 221.4 4e-57
NP_001191196 (OMIM: 137141) gamma-aminobutyric aci ( 484) 970 221.2 4.9e-57
NP_006520 (OMIM: 600421) glycine receptor subunit ( 464) 963 219.6 1.4e-56
NP_004952 (OMIM: 300093) gamma-aminobutyric acid r ( 506) 963 219.6 1.5e-56
XP_016864119 (OMIM: 600421) PREDICTED: glycine rec ( 424) 945 215.7 1.9e-55
NP_000803 (OMIM: 137190,617153) gamma-aminobutyric ( 474) 894 204.6 4.6e-52
NP_000804 (OMIM: 600232) gamma-aminobutyric acid r ( 474) 886 202.9 1.6e-51
NP_068711 (OMIM: 600232) gamma-aminobutyric acid r ( 512) 886 202.9 1.7e-51
XP_016877548 (OMIM: 600233) PREDICTED: gamma-amino ( 355) 881 201.7 2.5e-51
XP_016877547 (OMIM: 600233) PREDICTED: gamma-amino ( 361) 881 201.7 2.6e-51
>>XP_016863472 (OMIM: 103780,137140) PREDICTED: gamma-am (451 aa)
initn: 2974 init1: 2974 opt: 2974 Z-score: 3504.3 bits: 657.6 E(85289): 1.9e-188
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB4 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
370 380 390 400 410 420
430 440 450
pF1KB4 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
:::::::::::::::::::::::::::::::
XP_016 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
430 440 450
>>NP_000798 (OMIM: 103780,137140) gamma-aminobutyric aci (451 aa)
initn: 2974 init1: 2974 opt: 2974 Z-score: 3504.3 bits: 657.6 E(85289): 1.9e-188
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB4 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
370 380 390 400 410 420
430 440 450
pF1KB4 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
:::::::::::::::::::::::::::::::
NP_000 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
430 440 450
>>NP_001107647 (OMIM: 103780,137140) gamma-aminobutyric (451 aa)
initn: 2974 init1: 2974 opt: 2974 Z-score: 3504.3 bits: 657.6 E(85289): 1.9e-188
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB4 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
370 380 390 400 410 420
430 440 450
pF1KB4 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
:::::::::::::::::::::::::::::::
NP_001 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
430 440 450
>>XP_016863471 (OMIM: 103780,137140) PREDICTED: gamma-am (451 aa)
initn: 2974 init1: 2974 opt: 2974 Z-score: 3504.3 bits: 657.6 E(85289): 1.9e-188
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB4 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
370 380 390 400 410 420
430 440 450
pF1KB4 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
:::::::::::::::::::::::::::::::
XP_016 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
430 440 450
>>XP_005248137 (OMIM: 103780,137140) PREDICTED: gamma-am (396 aa)
initn: 2421 init1: 2421 opt: 2434 Z-score: 2869.6 bits: 540.0 E(85289): 4.3e-153
Smith-Waterman score: 2434; 93.9% identity (97.2% similar) in 396 aa overlap (56-451:2-396)
30 40 50 60 70 80
pF1KB4 VLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGLGDSITEVFTNIYVTSFGPVSDTDM
::. : :. : .:....... ...
XP_005 MRLKITL-PSLREFLTDFWMVTIIGLDQDWE
10 20 30
90 100 110 120 130 140
pF1KB4 EYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB4 LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDS
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB4 VQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTV
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB4 ILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVF
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB4 SALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASVMIQNNAYAVAVANYAPNLSKDPVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASVMIQNNAYAVAVANYAPNLSKDPVLS
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB4 TISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRMSRIVFPVLFGTFNLVYWATYLNREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRMSRIVFPVLFGTFNLVYWATYLNREP
340 350 360 370 380 390
450
pF1KB4 VLGVSP
::::::
XP_005 VLGVSP
>>NP_001317619 (OMIM: 103780,137140) gamma-aminobutyric (511 aa)
initn: 2960 init1: 2347 opt: 2350 Z-score: 2768.9 bits: 521.7 E(85289): 1.7e-147
Smith-Waterman score: 2651; 87.6% identity (87.6% similar) in 483 aa overlap (1-423:1-483)
10 20 30 40 50 60
pF1KB4 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDK-------
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKSPSIKAE
310 320 330 340 350 360
360
pF1KB4 -----------------------------------------------------KKEKASV
:::::::
NP_001 GITLTYNSVKAILQGAKLIWSKYIAFSWPSLFQEKTLEYLEKWMDCLTFKQSSKKEKASV
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB4 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
430 440 450 460 470 480
430 440 450
pF1KB4 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
:::
NP_001 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
490 500 510
>>XP_011511977 (OMIM: 103780,137140) PREDICTED: gamma-am (511 aa)
initn: 2960 init1: 2347 opt: 2350 Z-score: 2768.9 bits: 521.7 E(85289): 1.7e-147
Smith-Waterman score: 2651; 87.6% identity (87.6% similar) in 483 aa overlap (1-423:1-483)
10 20 30 40 50 60
pF1KB4 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDK-------
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKSPSIKAE
310 320 330 340 350 360
360
pF1KB4 -----------------------------------------------------KKEKASV
:::::::
XP_011 GITLTYNSVKAILQGAKLIWSKYIAFSWPSLFQEKTLEYLEKWMDCLTFKQSSKKEKASV
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB4 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MIQNNAYAVAVANYAPNLSKDPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDRM
430 440 450 460 470 480
430 440 450
pF1KB4 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
:::
XP_011 SRIVFPVLFGTFNLVYWATYLNREPVLGVSP
490 500 510
>>NP_001121115 (OMIM: 137160,611136,615744) gamma-aminob (456 aa)
initn: 2258 init1: 1888 opt: 2255 Z-score: 2657.9 bits: 501.0 E(85289): 2.6e-141
Smith-Waterman score: 2255; 81.3% identity (91.9% similar) in 418 aa overlap (32-447:32-449)
10 20 30 40 50 60
pF1KB4 KTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGL
.:: :.: :.::::::::::::::::::::
NP_001 RKSPGLSDCLWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKI
:. .::: :.:.::::::::: ::::::::::::.::::::::::::..:::::::::::
NP_001 GERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 WTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCP
::::::::::::::::::::::::::: .::::::::::::.:::::::::::::::.::
NP_001 WTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 LKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMT
::::::::: .::.: :: . . :: :: :::::::::::::.. . ..::::::.:::
NP_001 LKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDK-KKEKASV
::::::::::::::::::::::::::::::::::::::::.:::::::: .: :: : .
NP_001 NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPL
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 MIQNNAYAVAVANYAPNLSK-DPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDR
. .::.:: ....:.:::.. :: :.::.:::: . :::.:: : ::::::::::::
NP_001 IKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSVSKIDR
370 380 390 400 410 420
420 430 440 450
pF1KB4 MSRIVFPVLFGTFNLVYWATYLNREPVLGVSP
.:::.::.::: :::::::::::::: :
NP_001 LSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ
430 440 450
>>NP_000797 (OMIM: 137160,611136,615744) gamma-aminobuty (456 aa)
initn: 2258 init1: 1888 opt: 2255 Z-score: 2657.9 bits: 501.0 E(85289): 2.6e-141
Smith-Waterman score: 2255; 81.3% identity (91.9% similar) in 418 aa overlap (32-447:32-449)
10 20 30 40 50 60
pF1KB4 KTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGL
.:: :.: :.::::::::::::::::::::
NP_000 RKSPGLSDCLWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKI
:. .::: :.:.::::::::: ::::::::::::.::::::::::::..:::::::::::
NP_000 GERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 WTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCP
::::::::::::::::::::::::::: .::::::::::::.:::::::::::::::.::
NP_000 WTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 LKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMT
::::::::: .::.: :: . . :: :: :::::::::::::.. . ..::::::.:::
NP_000 LKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 THFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDK-KKEKASV
::::::::::::::::::::::::::::::::::::::::.:::::::: .: :: : .
NP_000 NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPL
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 MIQNNAYAVAVANYAPNLSK-DPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDR
. .::.:: ....:.:::.. :: :.::.:::: . :::.:: : ::::::::::::
NP_000 IKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSVSKIDR
370 380 390 400 410 420
420 430 440 450
pF1KB4 MSRIVFPVLFGTFNLVYWATYLNREPVLGVSP
.:::.::.::: :::::::::::::: :
NP_000 LSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ
430 440 450
>>NP_001121120 (OMIM: 137160,611136,615744) gamma-aminob (456 aa)
initn: 2258 init1: 1888 opt: 2255 Z-score: 2657.9 bits: 501.0 E(85289): 2.6e-141
Smith-Waterman score: 2255; 81.3% identity (91.9% similar) in 418 aa overlap (32-447:32-449)
10 20 30 40 50 60
pF1KB4 KTKLNIYNMQFLLFVFLVWDPARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGL
.:: :.: :.::::::::::::::::::::
NP_001 RKSPGLSDCLWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKI
:. .::: :.:.::::::::: ::::::::::::.::::::::::::..:::::::::::
NP_001 GERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 WTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCP
::::::::::::::::::::::::::: .::::::::::::.:::::::::::::::.::
NP_001 WTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 LKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMT
::::::::: .::.: :: . . :: :: :::::::::::::.. . ..::::::.:::
NP_001 LKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDK-KKEKASV
::::::::::::::::::::::::::::::::::::::::.:::::::: .: :: : .
NP_001 NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPL
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 MIQNNAYAVAVANYAPNLSK-DPVLSTISKSATTPEPNKKPENKPAEAKKTFNSVSKIDR
. .::.:: ....:.:::.. :: :.::.:::: . :::.:: : ::::::::::::
NP_001 IKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSVSKIDR
370 380 390 400 410 420
420 430 440 450
pF1KB4 MSRIVFPVLFGTFNLVYWATYLNREPVLGVSP
.:::.::.::: :::::::::::::: :
NP_001 LSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ
430 440 450
451 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:35:08 2016 done: Thu Nov 3 14:35:09 2016
Total Scan time: 8.370 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]