Result of FASTA (ccds) for
pF1KB4188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4188, 357 aa
1>>>pF1KB4188 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6934+/-0.000884; mu= 14.1067+/- 0.053
mean_var=64.1557+/-12.838, 0's: 0 Z-trim(105.0): 19 B-trim: 0 in 0/49
Lambda= 0.160124
statistics sampled from 8167 (8179) to 8167 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.251), width: 16
Scan time: 2.580
The best scores are: opt bits E(32554)
CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12 ( 357) 2358 553.5 9.8e-158
CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12 ( 350) 2282 536.0 1.9e-152
CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3 ( 349) 1591 376.3 2.1e-104
>>CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12 (357 aa)
initn: 2358 init1: 2358 opt: 2358 Z-score: 2945.3 bits: 553.5 E(32554): 9.8e-158
Smith-Waterman score: 2358; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)
10 20 30 40 50 60
pF1KB4 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
310 320 330 340 350
>>CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12 (350 aa)
initn: 1237 init1: 1237 opt: 2282 Z-score: 2850.6 bits: 536.0 E(32554): 1.9e-152
Smith-Waterman score: 2282; 98.0% identity (98.0% similar) in 357 aa overlap (1-357:1-350)
10 20 30 40 50 60
pF1KB4 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS31 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINE-------VQTDVGVDTKHQ
130 140 150 160 170
190 200 210 220 230 240
pF1KB4 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
240 250 260 270 280 290
310 320 330 340 350
pF1KB4 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
300 310 320 330 340 350
>>CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3 (349 aa)
initn: 1574 init1: 812 opt: 1591 Z-score: 1987.9 bits: 376.3 E(32554): 2.1e-104
Smith-Waterman score: 1591; 64.1% identity (89.2% similar) in 351 aa overlap (1-351:1-344)
10 20 30 40 50 60
pF1KB4 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
:.:::::.:.:..::.::.:: :. ::.:. ::.::::.:. ..: ::.::: ::::
CCDS28 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
:. .::::.:.:::::::::.::.:.:::::.: :: ::::::::::.::::::::::::
CCDS28 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
.:::::.:.:. ::.:.: : ..:::::.::.::.::.::: :.:...:..:::
CCDS28 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINE-------VKTEISVESKHQ
130 140 150 160 170
190 200 210 220 230 240
pF1KB4 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
::::.:::.. :: .::..:.....::.:...:.. : : :..: :.. .::.:.:.:.
CCDS28 TLQGLAFPLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
::::::::::.:::: :::.::::::::: :::.:::::::::::::. ::....... .
CCDS28 ARYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAK
240 250 260 270 280 290
310 320 330 340 350
pF1KB4 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
:::: .: ::::.:::.:::::::: ::.:::::::.:::: .::::::.:
CCDS28 KIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
300 310 320 330 340
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:35:48 2016 done: Thu Nov 3 14:35:48 2016
Total Scan time: 2.580 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]