Result of FASTA (ccds) for
pF1KB4220
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4220, 347 aa
1>>>pF1KB4220 347 - 347 aa - 347 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8047+/-0.000669; mu= 15.9685+/- 0.041
mean_var=98.9561+/-19.353, 0's: 0 Z-trim(113.6): 7 B-trim: 0 in 0/51
Lambda= 0.128930
statistics sampled from 14230 (14236) to 14230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.437), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS14411.1 ITGB1BP2 gene_id:26548|Hs108|chrX ( 347) 2464 467.9 5.4e-132
CCDS44705.1 CHORDC1 gene_id:26973|Hs108|chr11 ( 313) 851 167.9 1e-41
CCDS8289.1 CHORDC1 gene_id:26973|Hs108|chr11 ( 332) 757 150.4 2e-36
>>CCDS14411.1 ITGB1BP2 gene_id:26548|Hs108|chrX (347 aa)
initn: 2464 init1: 2464 opt: 2464 Z-score: 2483.2 bits: 467.9 E(32554): 5.4e-132
Smith-Waterman score: 2464; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB4 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNISQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNISQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 ALEMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALEMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRHDWHQTDSLVVVTVYGQIPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRHDWHQTDSLVVVTVYGQIPLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSW
250 260 270 280 290 300
310 320 330 340
pF1KB4 AQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMGE
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMGE
310 320 330 340
>>CCDS44705.1 CHORDC1 gene_id:26973|Hs108|chr11 (313 aa)
initn: 1071 init1: 320 opt: 851 Z-score: 862.3 bits: 167.9 E(32554): 1e-41
Smith-Waterman score: 896; 44.9% identity (68.1% similar) in 323 aa overlap (1-308:1-301)
10 20 30 40 50 60
pF1KB4 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT
:.::: :.::::.:::.:: :.: .:::::.:::::: :::
CCDS44 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALK-------------------GCT
10 20 30 40
70 80 90 100 110
pF1KB4 MGPHCAEKLPEAPQPEGPATSSS-LQEQKPL---NVI--PKSAETLRRERPKSELPLKLL
: : .:: :: .:: .: .. : : :: ..: :: .:...: :. . :. :
CCDS44 KGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKR--PSPDEPMTNL
50 60 70 80 90
120 130 140 150 160 170
pF1KB4 PLNISQALEMALEQKEL---DQEPGAGLDS-LIRTGSSCQNPGCDAVYQGPESDATPCTY
:.:: .:..::.. .: ..: :. :. :.::.: ::. .::: :: :.:
CCDS44 ELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVY
100 110 120 130 140 150
180 190 200 210 220
pF1KB4 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDW-----GKQLPASCRHDWHQT
: :.: :::::: :::: .: ::..:::: :: :.: : ::.. . ::::::::
CCDS44 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTKKDAGKKV-VPCRHDWHQT
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB4 DSLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMP
. :...::.. :: .. :.:..: :.:::::.:.. :. ..::::::.:..: : .
CCDS44 GGEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDVKRSYVTMTA
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB4 SRVEISLVKADPGSWAQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAM
...::.. ::.: .::.:: : :
CCDS44 TKIEITMRKAEPMQWASLELPAAKKQEKQKDATTD
280 290 300 310
>>CCDS8289.1 CHORDC1 gene_id:26973|Hs108|chr11 (332 aa)
initn: 1035 init1: 409 opt: 757 Z-score: 767.5 bits: 150.4 E(32554): 2e-36
Smith-Waterman score: 1055; 48.9% identity (73.7% similar) in 323 aa overlap (1-308:1-320)
10 20 30 40 50 60
pF1KB4 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT
:.::: :.::::.:::.:: :.: .:::::.:::::::::::..::.:::.::.: :::
CCDS82 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCT
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 MGPHCAEKLPEAPQPEGPATSSS-LQEQKPL---NVI--PKSAETLRRERPKSELPLKLL
: : .:: :: .:: .: .. : : :: ..: :: .:...: :. . :. :
CCDS82 KGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKR--PSPDEPMTNL
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 PLNISQALEMALEQKEL---DQEPGAGLDS-LIRTGSSCQNPGCDAVYQGPESDATPCTY
:.:: .:..::.. .: ..: :. :. :.::.: ::. .::: :: :.:
CCDS82 ELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVY
120 130 140 150 160 170
180 190 200 210 220
pF1KB4 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDW-----GKQLPASCRHDWHQT
: :.: :::::: :::: .: ::..:::: :: :.: : ::.. . ::::::::
CCDS82 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTKKDAGKKV-VPCRHDWHQT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB4 DSLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMP
. :...::.. :: .. :.:..: :.:::::.:.. :. ..::::::.:..: : .
CCDS82 GGEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDVKRSYVTMTA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB4 SRVEISLVKADPGSWAQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAM
...::.. ::.: .::.:: : :
CCDS82 TKIEITMRKAEPMQWASLELPAAKKQEKQKDATTD
300 310 320 330
347 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:42:54 2016 done: Sat Nov 5 05:42:54 2016
Total Scan time: 2.030 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]