Result of FASTA (ccds) for
pF1KB4221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4221, 561 aa
1>>>pF1KB4221 561 - 561 aa - 561 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.4739+/-0.00102; mu= -12.4152+/- 0.062
mean_var=442.0189+/-91.087, 0's: 0 Z-trim(116.6): 34 B-trim: 176 in 1/53
Lambda= 0.061003
statistics sampled from 17234 (17265) to 17234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.53), width: 16
Scan time: 4.460
The best scores are: opt bits E(32554)
CCDS33944.1 SH3BP2 gene_id:6452|Hs108|chr4 ( 561) 3943 361.2 1.9e-99
CCDS54715.1 SH3BP2 gene_id:6452|Hs108|chr4 ( 589) 3943 361.2 2e-99
CCDS54716.1 SH3BP2 gene_id:6452|Hs108|chr4 ( 618) 3943 361.2 2.1e-99
>>CCDS33944.1 SH3BP2 gene_id:6452|Hs108|chr4 (561 aa)
initn: 3943 init1: 3943 opt: 3943 Z-score: 1898.7 bits: 361.2 E(32554): 1.9e-99
Smith-Waterman score: 3943; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KB4 MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 FKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 WMALLRREIGHFHEKKDLPLDTSDSSSDTDSFYGAVERPVDISLSPYPTDNEDYEHDDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WMALLRREIGHFHEKKDLPLDTSDSSSDTDSFYGAVERPVDISLSPYPTDNEDYEHDDED
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 DSYLEPDSPEPGRLEDALMHPPAYPPPPVPTPRKPAFSDMPRAHSFTSKGPGPLLPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DSYLEPDSPEPGRLEDALMHPPAYPPPPVPTPRKPAFSDMPRAHSFTSKGPGPLLPPPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 KHGLPDVGLAAEDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGLRKPPCFRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KHGLPDVGLAAEDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGLRKPPCFRES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 ASPSPEPWTPGHGACSTSSAAIMATATSRNCDKLKSFHLSPRGPPTSEPPPVPANKPKFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASPSPEPWTPGHGACSTSSAAIMATATSRNCDKLKSFHLSPRGPPTSEPPPVPANKPKFL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 KIAEEDPPREAAMPGLFVPPVAPRPPALKLPVPEAMARPAVLPRPEKPQLPHLQRSPPDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KIAEEDPPREAAMPGLFVPPVAPRPPALKLPVPEAMARPAVLPRPEKPQLPHLQRSPPDG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 QSFRSFSFEKPRQPSQADTGGDDSDEDYEKVPLPNSVFVNTTESCEVERLFKATSPRGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QSFRSFSFEKPRQPSQADTGGDDSDEDYEKVPLPNSVFVNTTESCEVERLFKATSPRGEP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 QDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHT
490 500 510 520 530 540
550 560
pF1KB4 HVLPSHQSLLLRHPYGYTGPR
:::::::::::::::::::::
CCDS33 HVLPSHQSLLLRHPYGYTGPR
550 560
>>CCDS54715.1 SH3BP2 gene_id:6452|Hs108|chr4 (589 aa)
initn: 3943 init1: 3943 opt: 3943 Z-score: 1898.5 bits: 361.2 E(32554): 2e-99
Smith-Waterman score: 3943; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:29-589)
10 20 30
pF1KB4 MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGY
::::::::::::::::::::::::::::::::
CCDS54 MASLGPRTPAPSRSRGRRAMCWVSTISFMAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGY
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 LHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB4 VFPFKIIHISKKHRTWFFSASSEEERKSWMALLRREIGHFHEKKDLPLDTSDSSSDTDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VFPFKIIHISKKHRTWFFSASSEEERKSWMALLRREIGHFHEKKDLPLDTSDSSSDTDSF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 YGAVERPVDISLSPYPTDNEDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVPTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YGAVERPVDISLSPYPTDNEDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVPTP
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 RKPAFSDMPRAHSFTSKGPGPLLPPPPPKHGLPDVGLAAEDSKRDPLCPRRAEPCPRVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKPAFSDMPRAHSFTSKGPGPLLPPPPPKHGLPDVGLAAEDSKRDPLCPRRAEPCPRVPA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 TPRRMSDPPLSTMPTAPGLRKPPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRNCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TPRRMSDPPLSTMPTAPGLRKPPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRNCD
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 KLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALKLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALKLPV
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB4 PEAMARPAVLPRPEKPQLPHLQRSPPDGQSFRSFSFEKPRQPSQADTGGDDSDEDYEKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PEAMARPAVLPRPEKPQLPHLQRSPPDGQSFRSFSFEKPRQPSQADTGGDDSDEDYEKVP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB4 LPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYR
490 500 510 520 530 540
520 530 540 550 560
pF1KB4 IFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYTGPR
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYTGPR
550 560 570 580
>>CCDS54716.1 SH3BP2 gene_id:6452|Hs108|chr4 (618 aa)
initn: 3943 init1: 3943 opt: 3943 Z-score: 1898.2 bits: 361.2 E(32554): 2.1e-99
Smith-Waterman score: 3943; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:58-618)
10 20 30
pF1KB4 MAAEEMHWPVPMKAIGAQNLLTMPGGVAKA
::::::::::::::::::::::::::::::
CCDS54 RGPGPCRCSQGRRAWIAPGKPAMPAAWTPFMAAEEMHWPVPMKAIGAQNLLTMPGGVAKA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB4 GYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTS
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB4 NNVFPFKIIHISKKHRTWFFSASSEEERKSWMALLRREIGHFHEKKDLPLDTSDSSSDTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NNVFPFKIIHISKKHRTWFFSASSEEERKSWMALLRREIGHFHEKKDLPLDTSDSSSDTD
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB4 SFYGAVERPVDISLSPYPTDNEDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SFYGAVERPVDISLSPYPTDNEDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVP
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB4 TPRKPAFSDMPRAHSFTSKGPGPLLPPPPPKHGLPDVGLAAEDSKRDPLCPRRAEPCPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TPRKPAFSDMPRAHSFTSKGPGPLLPPPPPKHGLPDVGLAAEDSKRDPLCPRRAEPCPRV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB4 PATPRRMSDPPLSTMPTAPGLRKPPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PATPRRMSDPPLSTMPTAPGLRKPPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRN
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB4 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALKL
390 400 410 420 430 440
400 410 420 430 440 450
pF1KB4 PVPEAMARPAVLPRPEKPQLPHLQRSPPDGQSFRSFSFEKPRQPSQADTGGDDSDEDYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PVPEAMARPAVLPRPEKPQLPHLQRSPPDGQSFRSFSFEKPRQPSQADTGGDDSDEDYEK
450 460 470 480 490 500
460 470 480 490 500 510
pF1KB4 VPLPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VPLPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRN
510 520 530 540 550 560
520 530 540 550 560
pF1KB4 YRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYTGPR
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYTGPR
570 580 590 600 610
561 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:37:50 2016 done: Thu Nov 3 14:37:51 2016
Total Scan time: 4.460 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]