Result of FASTA (ccds) for
pF1KB4275
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4275, 574 aa
1>>>pF1KB4275 574 - 574 aa - 574 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.1101+/-0.00112; mu= -9.8096+/- 0.068
mean_var=469.2624+/-95.971, 0's: 0 Z-trim(117.1): 97 B-trim: 479 in 1/51
Lambda= 0.059206
statistics sampled from 17729 (17826) to 17729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.548), width: 16
Scan time: 4.440
The best scores are: opt bits E(32554)
CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12 ( 574) 4105 364.9 1.5e-100
CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1 ( 588) 1265 122.4 1.6e-27
CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1 ( 622) 784 81.3 3.9e-15
>>CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12 (574 aa)
initn: 4105 init1: 4105 opt: 4105 Z-score: 1918.7 bits: 364.9 E(32554): 1.5e-100
Smith-Waterman score: 4105; 100.0% identity (100.0% similar) in 574 aa overlap (1-574:1-574)
10 20 30 40 50 60
pF1KB4 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPGSPTDPNATLSKDEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPGSPTDPNATLSKDEAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 VHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKCFRKVPRPRDDPGKGSYWTIDTCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 NKCFRKVPRPRDDPGKGSYWTIDTCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVAGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GEASLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGASGRESAEGPPPLYNTNHDFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GEASLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGASGRESAEGPPPLYNTNHDFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FSYSEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGDIPPSNNYYMYQQQQPPPPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 FSYSEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGDIPPSNNYYMYQQQQPPPPQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 QQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 PVMAMHPPPLQHGGYHPHQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PVMAMHPPPLQHGGYHPHQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 PPQGGTHRPPAPARIADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PPQGGTHRPPAPARIADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSA
490 500 510 520 530 540
550 560 570
pF1KB4 GYNRPAHHMVPRPSVPPPGANEEIPDDFDWDLIT
::::::::::::::::::::::::::::::::::
CCDS85 GYNRPAHHMVPRPSVPPPGANEEIPDDFDWDLIT
550 560 570
>>CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1 (588 aa)
initn: 1255 init1: 562 opt: 1265 Z-score: 607.5 bits: 122.4 E(32554): 1.6e-27
Smith-Waterman score: 1285; 40.2% identity (64.4% similar) in 612 aa overlap (1-573:16-587)
10 20 30 40
pF1KB4 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPG
:.:.:::::::.:::::::.::.:.: ....: : :.: .
CCDS55 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKK---N
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 SPTDPNATLSKDEAAVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKN
. :::.::...:. :.:::: ::::.:::.:::::: :::::::::.:::::::::..
CCDS55 ALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYRE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 AGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCP--DI--SR-KRRHPPDDDL
:: :::::::::::::::: :::: .:::::::::.::: : :. .: :.: . .
CCDS55 AGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 SQDSPEQEASKSPRGGVAGSGEASLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGA
. . .:..: ::: .: . :: .. ...:.: :. ::. :. . .:. .
CCDS55 TLYNTDQDGSDSPR----SSLNNSLSDQSLASVNLNSVGSVHSYTPVTSHPE--SVSQSL
180 190 200 210 220 230
230 240 250 260
pF1KB4 SGRESAEGPPPLYNT-NHDFKFSYSEINFQDLSWSFRNLYKSMLEKS----------SSS
. ... : :: ..: .. .:: ::.::: :::.::::..:.: : :
CCDS55 TPQQQ-----PQYNLPERDKQLLFSEYNFEDLSASFRSLYKSVFEQSLSQQGLMNIPSES
240 250 260 270 280
270 280 290 300 310 320
pF1KB4 SQHGFSSLLGDIPPSNNY--YMYQQQQPPPPQQQQQQQQPPQPPPQQ---SQPQQQQAPA
::.. .: . ::.. . ...:. .. . . . : :.::.. :.
CCDS55 SQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHTQPS
290 300 310 320 330 340
330 340 350 360 370 380
pF1KB4 QGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPPPVMAMHPPPLQHGGYHP-HQHHPH
: . : : :. . : .: .. .: : .:: : :: .:: :::.
CCDS55 PHPPHRPHGLPQH-PQRSPHPAPHPQQH-SQLQSPHP---QHPSPHQHIQHHPNHQHQTL
350 360 370 380 390 400
390 400 410 420 430 440
pF1KB4 SHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDSLKESFKMVNRLNWSSIEQSQFSE
.: : ::::: :.. .. ..: :: ...: :::: .... .:::... :::.
CCDS55 TH--QAPPPPQ-QVSCNSGVSN-------DWYATLDMLKESCRIASSVNWSDVDLSQFQG
410 420 430 440 450
450 460 470 480 490
pF1KB4 LMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHVPPQG--------GTHRPPAPAR-
::::.:::. :::.::: ..:.::.:::.:.:::: . :. :. .: :..
CCDS55 LMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPTKPSQH
460 470 480 490 500 510
500 510 520 530 540 550
pF1KB4 IADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSAGYNRPAH--HMVP-
:. . ...:. : . :.:. :. :. . ::..: . ::.:
CCDS55 IGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTM-------AGHHRAMNQQHMMPS
520 530 540 550 560
560 570
pF1KB4 -----RPSVPPPGANEEIPDDFDWDLIT
: :.:: ..: :::::: :
CCDS55 QAFQMRRSLPP----DDIQDDFDWDSIV
570 580
>>CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1 (622 aa)
initn: 1146 init1: 562 opt: 784 Z-score: 385.2 bits: 81.3 E(32554): 3.9e-15
Smith-Waterman score: 1232; 39.4% identity (62.7% similar) in 632 aa overlap (1-570:16-618)
10 20 30 40
pF1KB4 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPG
:.:.:::::::.:::::::.::.:.: ....: : :.: .
CCDS30 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKK---N
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 SPTDPNATLSKDEAAVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKN
. :::.::...:. :.:::: ::::.:::.:::::: :::::::::.:::::::::..
CCDS30 ALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYRE
60 70 80 90 100 110
110 120 130 140 150
pF1KB4 AGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCP--DI----SRKR-----RH
:: :::::::::::::::: :::: .:::::::::.::: : :. .:: :
CCDS30 AGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERA
120 130 140 150 160 170
160 170 180 190 200
pF1KB4 PPDDDLSQDSPEQE----ASKSPRGGVAG-SGEASL---PPEGN--PQMSLQ---SPTSI
....:: .: .: :: .. .....: .:. :. ::. : :.
CCDS30 STPYSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSL
180 190 200 210 220 230
210 220 230 240 250
pF1KB4 ASYSQGT-GSVDGGAVAAGASGRESAEGPP---PLYNT-NHDFKFSYSEINFQDLSWSFR
:: . .. ::: . . ... : : : :: ..: .. .:: ::.::: :::
CCDS30 ASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFR
240 250 260 270 280 290
260 270 280 290 300
pF1KB4 NLYKSMLEKS----------SSSSQHGFSSLLGDIPPSNNY--YMYQQQQPPPPQQQQQQ
.::::..:.: : :::.. .: . ::.. . ...:. .. .
CCDS30 SLYKSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGL
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB4 QQPPQPPPQQ---SQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPPP
. . : :.::.. :. : . : : :. . : .: .. .: :
CCDS30 NTTGSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQH-PQRSPHPAPHPQQH-SQLQSPHP
360 370 380 390 400 410
370 380 390 400 410 420
pF1KB4 VMAMHPPPLQHGGYHP-HQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
.:: : :: .:: :::. .: : ::::: :.. .. ..: :: ...:
CCDS30 ---QHPSPHQHIQHHPNHQHQTLTH--QAPPPPQ-QVSCNSGVSN-------DWYATLDM
420 430 440 450 460
430 440 450 460 470 480
pF1KB4 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
:::: .... .:::... :::. ::::.:::. :::.::: ..:.::.:::.:.:::: .
CCDS30 LKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLI
470 480 490 500 510 520
490 500 510 520 530
pF1KB4 PPQG--------GTHRPPAPAR-IADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPM
:. :. .: :.. :. . ...:. : . :.:. :. :.
CCDS30 HSQSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTT
530 540 550 560 570 580
540 550 560 570
pF1KB4 YPIPTQDSAGYNRPAH--HMVP------RPSVPPPGANEEIPDDFDWDLIT
. ::..: . ::.: : :.:: ..: :::::
CCDS30 M-------AGHHRAMNQQHMMPSQAFQMRRSLPP----DDIQDDFDWDSIV
590 600 610 620
574 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:32:23 2016 done: Thu Nov 3 21:32:23 2016
Total Scan time: 4.440 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]