Result of FASTA (ccds) for pF1KB4278
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4278, 344 aa
  1>>>pF1KB4278 344 - 344 aa - 344 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2810+/-0.00082; mu= 16.5494+/- 0.050
 mean_var=66.4917+/-13.450, 0's: 0 Z-trim(106.8): 25  B-trim: 472 in 1/49
 Lambda= 0.157286
 statistics sampled from 9186 (9210) to 9186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4            ( 344) 2294 529.3 1.8e-150
CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5            ( 295)  972 229.3 3.2e-60
CCDS3580.1 CCNI gene_id:10983|Hs108|chr4           ( 377)  417 103.4 3.2e-22
CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5        ( 369)  298 76.4 4.2e-14


>>CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4                 (344 aa)
 initn: 2294 init1: 2294 opt: 2294  Z-score: 2815.0  bits: 529.3 E(32554): 1.8e-150
Smith-Waterman score: 2294; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KB4 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 SLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 FFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFD
              250       260       270       280       290       300

              310       320       330       340    
pF1KB4 ESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS
              310       320       330       340    

>>CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5                 (295 aa)
 initn: 972 init1: 498 opt: 972  Z-score: 1194.7  bits: 229.3 E(32554): 3.2e-60
Smith-Waterman score: 972; 52.8% identity (79.3% similar) in 290 aa overlap (7-295:3-292)

               10        20        30        40        50        60
pF1KB4 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
             : :.  .. .::  ::. :::: : ::.  :: :::.. .:   .   ::. .:
CCDS43     MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEV
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB4 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
       .:: ::..:::  :::: ::::.:::::. :::.::::.:.:.  : ::.. .::. :.:
CCDS43 KDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVP
         60        70        80        90       100       110      

              130       140       150       160       170          
pF1KB4 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTS-ERKEI
        . :.::::: . :.::. :::::. ::. ....::::..::.::....  .   ::.. 
CCDS43 LATDLIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNS
        120       130       140       150       160       170      

     180       190       200       210       220       230         
pF1KB4 LSLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDT
       .....::::::::.::.:::::::::::: .. ::... : ::: : .  ..::::::  
CCDS43 INFERLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGR
        180       190       200       210       220       230      

     240       250       260       270       280       290         
pF1KB4 EFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCF
       .. .:.:::::::.:::: .: ::...:: :::: :::..:..::: . .::::::    
CCDS43 DLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP 
        240       250       260       270       280       290      

     300       310       320       330       340    
pF1KB4 DESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS

>>CCDS3580.1 CCNI gene_id:10983|Hs108|chr4                (377 aa)
 initn: 362 init1: 325 opt: 417  Z-score: 512.5  bits: 103.4 E(32554): 3.2e-22
Smith-Waterman score: 417; 36.4% identity (67.1% similar) in 228 aa overlap (41-257:31-252)

               20        30        40        50        60        70
pF1KB4 GHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKVEDLRSLANFF
                                     ..  : :.: . :. :.  .. : .:   :
CCDS35 MKFPGPLENQRLSFLLEKAITREAQMWKVNVRKMPSNQN-VSPSQRDEVIQWLAKLKYQF
               10        20        30         40        50         

               80        90       100       110       120       130
pF1KB4 GSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIPSTHDVIRISQ
       .   :::.:: ..:::::: .:..::.::::..  :.:::. ::::  ::  . . : : 
CCDS35 NLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSF
      60        70        80        90       100       110         

              140       150       160       170       180          
pF1KB4 CKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEIL-SLDKLEA--
       : :..:.: :::.:: .::...:...: :.:::..:.: .   : : ..: :: ::    
CCDS35 CGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAV---STRPQLLFSLPKLSPSQ
     120       130       140       150          160       170      

              190        200       210       220       230         
pF1KB4 -------QLKAC-NCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDT
              ::  :  :  .. . . :.::: ...::.: :   . : . . . ........
CCDS35 HLAVLTKQLLHCMACNQLL-QFRGSMLALAMVSLEMEKLIP-DWLSLTIELLQKAQMDSS
        180       190        200       210        220       230    

     240       250       260       270       280       290         
pF1KB4 EFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCF
       .... ::::.. :.  .:                                          
CCDS35 QLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNS
          240       250       260       270       280       290    

>>CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5             (369 aa)
 initn: 288 init1: 207 opt: 298  Z-score: 366.7  bits: 76.4 E(32554): 4.2e-14
Smith-Waterman score: 298; 30.9% identity (58.7% similar) in 223 aa overlap (45-260:142-360)

           20        30        40        50        60        70    
pF1KB4 VQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKVEDLRSLANFFGSCT
                                     :...  .: ..... .  :: : : :    
CCDS34 NLEGDLDERRLLCHLQLAQDREARLWRGGKPQDE--ICDAFEEVVLWLLR-LQNTFYFSQ
             120       130       140         150        160        

           80        90       100       110       120       130    
pF1KB4 ETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIPSTHDVIRISQCKCT
        :: ::..:. :.:  .::: :.: :  . :. :::.. ::.  ::...:  .      .
CCDS34 STFNLALTIFGRLLISVKVKEKYLHCATITSLRLAAKVNEEEEFIPQVKDFTKHYGSDYS
      170       180       190       200       210       220        

          140       150       160       170              180       
pF1KB4 ASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILC---HTSE----RKEILSLDKLEA
        ... :::  : ..::..:   : :.:: ..:....    :. :    :.  : . .:  
CCDS34 PNELLRMELAILDRLHWDLYIGTPLDFLTIFHALVVLSWPHVLELLPQRNPSLHVASLTR
      230       240       250       260       270       280        

       190       200       210       220       230       240       
pF1KB4 QLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTEFFYWREL
       ::. :     . . : :.::: ...::.: :       :  :.:: ....: ..   .::
CCDS34 QLQHCMAGHQLLQFKGSTLALVIITLELERLMPGWCAPISDLLKK-AQVGDMQYSCCKEL
      290       300       310       320       330        340       

       250       260       270       280       290       300       
pF1KB4 VSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDESESEDS
       : . :   .:  :                                               
CCDS34 VMQQLRSLQSSSCTDNFVSPAN                                      
       350       360                                               




344 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:46:00 2016 done: Sat Nov  5 05:46:00 2016
 Total Scan time:  2.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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