Result of FASTA (ccds) for
pF1KB4278
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4278, 344 aa
1>>>pF1KB4278 344 - 344 aa - 344 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2810+/-0.00082; mu= 16.5494+/- 0.050
mean_var=66.4917+/-13.450, 0's: 0 Z-trim(106.8): 25 B-trim: 472 in 1/49
Lambda= 0.157286
statistics sampled from 9186 (9210) to 9186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.283), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4 ( 344) 2294 529.3 1.8e-150
CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5 ( 295) 972 229.3 3.2e-60
CCDS3580.1 CCNI gene_id:10983|Hs108|chr4 ( 377) 417 103.4 3.2e-22
CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5 ( 369) 298 76.4 4.2e-14
>>CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4 (344 aa)
initn: 2294 init1: 2294 opt: 2294 Z-score: 2815.0 bits: 529.3 E(32554): 1.8e-150
Smith-Waterman score: 2294; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)
10 20 30 40 50 60
pF1KB4 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 SLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFD
250 260 270 280 290 300
310 320 330 340
pF1KB4 ESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS
::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS
310 320 330 340
>>CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5 (295 aa)
initn: 972 init1: 498 opt: 972 Z-score: 1194.7 bits: 229.3 E(32554): 3.2e-60
Smith-Waterman score: 972; 52.8% identity (79.3% similar) in 290 aa overlap (7-295:3-292)
10 20 30 40 50 60
pF1KB4 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
: :. .. .:: ::. :::: : ::. :: :::.. .: . ::. .:
CCDS43 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEV
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
.:: ::..::: :::: ::::.:::::. :::.::::.:.:. : ::.. .::. :.:
CCDS43 KDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVP
60 70 80 90 100 110
130 140 150 160 170
pF1KB4 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTS-ERKEI
. :.::::: . :.::. :::::. ::. ....::::..::.::.... . ::..
CCDS43 LATDLIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 LSLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDT
.....::::::::.::.:::::::::::: .. ::... : ::: : . ..::::::
CCDS43 INFERLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 EFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCF
.. .:.:::::::.:::: .: ::...:: :::: :::..:..::: . .::::::
CCDS43 DLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP
240 250 260 270 280 290
300 310 320 330 340
pF1KB4 DESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS
>>CCDS3580.1 CCNI gene_id:10983|Hs108|chr4 (377 aa)
initn: 362 init1: 325 opt: 417 Z-score: 512.5 bits: 103.4 E(32554): 3.2e-22
Smith-Waterman score: 417; 36.4% identity (67.1% similar) in 228 aa overlap (41-257:31-252)
20 30 40 50 60 70
pF1KB4 GHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKVEDLRSLANFF
.. : :.: . :. :. .. : .: :
CCDS35 MKFPGPLENQRLSFLLEKAITREAQMWKVNVRKMPSNQN-VSPSQRDEVIQWLAKLKYQF
10 20 30 40 50
80 90 100 110 120 130
pF1KB4 GSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIPSTHDVIRISQ
. :::.:: ..:::::: .:..::.::::.. :.:::. :::: :: . . : :
CCDS35 NLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSF
60 70 80 90 100 110
140 150 160 170 180
pF1KB4 CKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEIL-SLDKLEA--
: :..:.: :::.:: .::...:...: :.:::..:.: . : : ..: :: ::
CCDS35 CGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAV---STRPQLLFSLPKLSPSQ
120 130 140 150 160 170
190 200 210 220 230
pF1KB4 -------QLKAC-NCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDT
:: : : .. . . :.::: ...::.: : . : . . . ........
CCDS35 HLAVLTKQLLHCMACNQLL-QFRGSMLALAMVSLEMEKLIP-DWLSLTIELLQKAQMDSS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 EFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCF
.... ::::.. :. .:
CCDS35 QLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNS
240 250 260 270 280 290
>>CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5 (369 aa)
initn: 288 init1: 207 opt: 298 Z-score: 366.7 bits: 76.4 E(32554): 4.2e-14
Smith-Waterman score: 298; 30.9% identity (58.7% similar) in 223 aa overlap (45-260:142-360)
20 30 40 50 60 70
pF1KB4 VQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKVEDLRSLANFFGSCT
:... .: ..... . :: : : :
CCDS34 NLEGDLDERRLLCHLQLAQDREARLWRGGKPQDE--ICDAFEEVVLWLLR-LQNTFYFSQ
120 130 140 150 160
80 90 100 110 120 130
pF1KB4 ETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIPSTHDVIRISQCKCT
:: ::..:. :.: .::: :.: : . :. :::.. ::. ::...: . .
CCDS34 STFNLALTIFGRLLISVKVKEKYLHCATITSLRLAAKVNEEEEFIPQVKDFTKHYGSDYS
170 180 190 200 210 220
140 150 160 170 180
pF1KB4 ASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILC---HTSE----RKEILSLDKLEA
... ::: : ..::..: : :.:: ..:.... :. : :. : . .:
CCDS34 PNELLRMELAILDRLHWDLYIGTPLDFLTIFHALVVLSWPHVLELLPQRNPSLHVASLTR
230 240 250 260 270 280
190 200 210 220 230 240
pF1KB4 QLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTEFFYWREL
::. : . . : :.::: ...::.: : : :.:: ....: .. .::
CCDS34 QLQHCMAGHQLLQFKGSTLALVIITLELERLMPGWCAPISDLLKK-AQVGDMQYSCCKEL
290 300 310 320 330 340
250 260 270 280 290 300
pF1KB4 VSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDESESEDS
: . : .: :
CCDS34 VMQQLRSLQSSSCTDNFVSPAN
350 360
344 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:46:00 2016 done: Sat Nov 5 05:46:00 2016
Total Scan time: 2.770 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]