FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4371, 158 aa
  1>>>pF1KB4371 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2495+/-0.000584; mu= 12.9905+/- 0.035
 mean_var=69.5693+/-13.763, 0's: 0 Z-trim(113.2): 6  B-trim: 0 in 0/50
 Lambda= 0.153768
 statistics sampled from 13860 (13866) to 13860 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.426), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS47673.1 POLR2J3 gene_id:548644|Hs108|chr7      ( 115)  678 158.2 1.4e-39
CCDS43627.1 POLR2J2 gene_id:246721|Hs108|chr7      ( 115)  671 156.7 4.1e-39
CCDS5724.1 POLR2J gene_id:5439|Hs108|chr7          ( 117)  671 156.7 4.2e-39


>>CCDS47673.1 POLR2J3 gene_id:548644|Hs108|chr7           (115 aa)
 initn: 678 init1: 678 opt: 678  Z-score: 824.1  bits: 158.2 E(32554): 1.4e-39
Smith-Waterman score: 678; 99.0% identity (99.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWTL
       :::::::::::::::::::::::::::::::::: ::::::::::               
CCDS47 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP     
               70        80        90       100       110          

              130       140       150        
pF1KB4 ARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD

>>CCDS43627.1 POLR2J2 gene_id:246721|Hs108|chr7           (115 aa)
 initn: 671 init1: 671 opt: 671  Z-score: 815.7  bits: 156.7 E(32554): 4.1e-39
Smith-Waterman score: 671; 98.1% identity (99.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS43 MNAPPAFESFLLFEGEKITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWTL
       :::::::::::::::::::::::::::::::::: ::::::::::               
CCDS43 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP     
               70        80        90       100       110          

              130       140       150        
pF1KB4 ARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD

>>CCDS5724.1 POLR2J gene_id:5439|Hs108|chr7               (117 aa)
 initn: 575 init1: 575 opt: 671  Z-score: 815.6  bits: 156.7 E(32554): 4.2e-39
Smith-Waterman score: 671; 98.1% identity (98.1% similar) in 107 aa overlap (1-106:1-107)

               10         20        30        40        50         
pF1KB4 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS57 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWT
       ::::::::::::::::::::::::::::::::::: :::::::::::             
CCDS57 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE   
               70        80        90       100       110          

     120       130       140       150        
pF1KB4 LARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:51:51 2016 done: Thu Nov  3 14:51:52 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]