Result of FASTA (omim) for
pF1KB4445
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4445, 149 aa
1>>>pF1KB4445 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9972+/-0.000437; mu= 15.2507+/- 0.028
mean_var=120.2659+/-24.334, 0's: 0 Z-trim(114.7): 219 B-trim: 729 in 4/50
Lambda= 0.116951
statistics sampled from 24409 (24720) to 24409 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.29), width: 16
Scan time: 5.010
The best scores are: opt bits E(85289)
NP_008819 (OMIM: 114180,614916,616247) calmodulin ( 149) 959 172.1 3e-43
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149) 959 172.1 3e-43
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149) 959 172.1 3e-43
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149) 959 172.1 3e-43
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150) 952 170.9 6.8e-43
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197) 952 171.1 8e-43
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149) 855 154.5 5.8e-38
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113) 735 134.1 6.1e-32
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 735 134.1 6.1e-32
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 735 134.1 6.1e-32
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 735 134.1 6.1e-32
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 735 134.1 6.1e-32
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113) 735 134.1 6.1e-32
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 735 134.1 6.1e-32
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160) 532 100.1 1.5e-21
XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145) 513 96.8 1.3e-20
NP_003271 (OMIM: 191040,611879,613243) troponin C, ( 161) 512 96.7 1.6e-20
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens] ( 172) 502 95.1 5.3e-20
NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens] ( 172) 496 94.0 1.1e-19
NP_059118 (OMIM: 605183) calmodulin-like protein 5 ( 146) 494 93.6 1.2e-19
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181) 440 84.6 7.7e-17
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203) 440 84.7 8.3e-17
NP_001317242 (OMIM: 610171) calmodulin-like protei ( 164) 436 83.9 1.2e-16
NP_524147 (OMIM: 609931) myosin light polypeptide ( 151) 435 83.7 1.2e-16
NP_066299 (OMIM: 609931) myosin light polypeptide ( 151) 428 82.5 2.8e-16
NP_062829 (OMIM: 607315) calcium-binding protein 5 ( 173) 422 81.6 6.2e-16
XP_016882481 (OMIM: 607315) PREDICTED: calcium-bin ( 284) 422 81.9 8.3e-16
NP_004267 (OMIM: 605563) calcium-binding protein 1 ( 167) 418 80.9 9.7e-16
NP_112482 (OMIM: 605563) calcium-binding protein 1 ( 227) 418 81.0 1.2e-15
NP_001028849 (OMIM: 605563) calcium-binding protei ( 370) 418 81.3 1.5e-15
NP_006088 (OMIM: 609905) myosin regulatory light p ( 172) 411 79.7 2.2e-15
NP_291024 (OMIM: 609211) myosin regulatory light c ( 172) 407 79.0 3.6e-15
NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172) 407 79.0 3.6e-15
NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172) 407 79.0 3.6e-15
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208) 406 79.0 4.5e-15
NP_001186558 (OMIM: 609930) myosin light chain 6B ( 208) 406 79.0 4.5e-15
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150) 402 78.1 5.9e-15
NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220) 403 78.5 6.6e-15
NP_001305425 (OMIM: 607314,614899) calcium-binding ( 226) 403 78.5 6.7e-15
NP_001287824 (OMIM: 608965,610427) calcium-binding ( 170) 398 77.5 1e-14
NP_001287825 (OMIM: 608965,610427) calcium-binding ( 170) 398 77.5 1e-14
XP_016873514 (OMIM: 608965,610427) PREDICTED: calc ( 170) 398 77.5 1e-14
XP_011543485 (OMIM: 608965,610427) PREDICTED: calc ( 170) 398 77.5 1e-14
NP_660201 (OMIM: 608965,610427) calcium-binding pr ( 275) 398 77.8 1.3e-14
XP_011543483 (OMIM: 608965,610427) PREDICTED: calc ( 295) 398 77.8 1.4e-14
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194) 395 77.1 1.6e-14
NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167) 385 75.3 4.6e-14
NP_000249 (OMIM: 160790,608751) myosin light chain ( 195) 382 74.9 7.1e-14
XP_016875728 (OMIM: 605563) PREDICTED: calcium-bin ( 202) 382 74.9 7.3e-14
XP_016875727 (OMIM: 605563) PREDICTED: calcium-bin ( 262) 382 75.1 8.5e-14
>>NP_008819 (OMIM: 114180,614916,616247) calmodulin [Hom (149 aa)
initn: 959 init1: 959 opt: 959 Z-score: 897.4 bits: 172.1 E(85289): 3e-43
Smith-Waterman score: 959; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
70 80 90 100 110 120
130 140
pF1KB4 EVDEMIREADIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::::::::
NP_008 EVDEMIREADIDGDGQVNYEEFVQMMTAK
130 140
>>NP_001316851 (OMIM: 114183) calmodulin isoform 1 [Homo (149 aa)
initn: 959 init1: 959 opt: 959 Z-score: 897.4 bits: 172.1 E(85289): 3e-43
Smith-Waterman score: 959; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
70 80 90 100 110 120
130 140
pF1KB4 EVDEMIREADIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::::::::
NP_001 EVDEMIREADIDGDGQVNYEEFVQMMTAK
130 140
>>NP_001734 (OMIM: 114182,616249) calmodulin isoform 2 [ (149 aa)
initn: 959 init1: 959 opt: 959 Z-score: 897.4 bits: 172.1 E(85289): 3e-43
Smith-Waterman score: 959; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
70 80 90 100 110 120
130 140
pF1KB4 EVDEMIREADIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::::::::
NP_001 EVDEMIREADIDGDGQVNYEEFVQMMTAK
130 140
>>NP_005175 (OMIM: 114183) calmodulin isoform 1 [Homo sa (149 aa)
initn: 959 init1: 959 opt: 959 Z-score: 897.4 bits: 172.1 E(85289): 3e-43
Smith-Waterman score: 959; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
70 80 90 100 110 120
130 140
pF1KB4 EVDEMIREADIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::::::::
NP_005 EVDEMIREADIDGDGQVNYEEFVQMMTAK
130 140
>>XP_006720321 (OMIM: 114180,614916,616247) PREDICTED: c (150 aa)
initn: 952 init1: 952 opt: 952 Z-score: 891.0 bits: 170.9 E(85289): 6.8e-43
Smith-Waterman score: 952; 100.0% identity (100.0% similar) in 148 aa overlap (2-149:3-150)
10 20 30 40 50
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD
70 80 90 100 110 120
120 130 140
pF1KB4 EEVDEMIREADIDGDGQVNYEEFVQMMTAK
::::::::::::::::::::::::::::::
XP_006 EEVDEMIREADIDGDGQVNYEEFVQMMTAK
130 140 150
>>NP_001292553 (OMIM: 114182,616249) calmodulin isoform (197 aa)
initn: 952 init1: 952 opt: 952 Z-score: 889.8 bits: 171.1 E(85289): 8e-43
Smith-Waterman score: 952; 100.0% identity (100.0% similar) in 148 aa overlap (2-149:50-197)
10 20 30
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTK
::::::::::::::::::::::::::::::
NP_001 GCVVASRKPVALAAWLALYIASHFAQQPCKADQLTEEQIAEFKEAFSLFDKDGDGTITTK
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB4 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR
80 90 100 110 120 130
100 110 120 130 140
pF1KB4 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
140 150 160 170 180 190
>>NP_005176 (OMIM: 114184) calmodulin-like protein 3 [Ho (149 aa)
initn: 1059 init1: 855 opt: 855 Z-score: 802.6 bits: 154.5 E(85289): 5.8e-38
Smith-Waterman score: 855; 84.6% identity (96.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB4 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
:::::::::..::::::::::::::: :::.::::::::::::::::::.::..:.: ::
NP_005 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
:::.:::::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::
NP_005 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
70 80 90 100 110 120
130 140
pF1KB4 EVDEMIREADIDGDGQVNYEEFVQMMTAK
::::::: :: ::::::::::::.....:
NP_005 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
130 140
>>NP_001292554 (OMIM: 114182,616249) calmodulin isoform (113 aa)
initn: 735 init1: 735 opt: 735 Z-score: 694.4 bits: 134.1 E(85289): 6.1e-32
Smith-Waterman score: 735; 100.0% identity (100.0% similar) in 113 aa overlap (37-149:1-113)
10 20 30 40 50 60
pF1KB4 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF
::::::::::::::::::::::::::::::
NP_001 MRSLGQNPTEAELQDMINEVDADGNGTIDF
10 20 30
70 80 90 100 110 120
pF1KB4 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
40 50 60 70 80 90
130 140
pF1KB4 READIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::
NP_001 READIDGDGQVNYEEFVQMMTAK
100 110
>>NP_001316852 (OMIM: 114183) calmodulin isoform 2 [Homo (113 aa)
initn: 735 init1: 735 opt: 735 Z-score: 694.4 bits: 134.1 E(85289): 6.1e-32
Smith-Waterman score: 735; 100.0% identity (100.0% similar) in 113 aa overlap (37-149:1-113)
10 20 30 40 50 60
pF1KB4 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF
::::::::::::::::::::::::::::::
NP_001 MRSLGQNPTEAELQDMINEVDADGNGTIDF
10 20 30
70 80 90 100 110 120
pF1KB4 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
40 50 60 70 80 90
130 140
pF1KB4 READIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::
NP_001 READIDGDGQVNYEEFVQMMTAK
100 110
>>NP_001316850 (OMIM: 114183) calmodulin isoform 2 [Homo (113 aa)
initn: 735 init1: 735 opt: 735 Z-score: 694.4 bits: 134.1 E(85289): 6.1e-32
Smith-Waterman score: 735; 100.0% identity (100.0% similar) in 113 aa overlap (37-149:1-113)
10 20 30 40 50 60
pF1KB4 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF
::::::::::::::::::::::::::::::
NP_001 MRSLGQNPTEAELQDMINEVDADGNGTIDF
10 20 30
70 80 90 100 110 120
pF1KB4 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
40 50 60 70 80 90
130 140
pF1KB4 READIDGDGQVNYEEFVQMMTAK
:::::::::::::::::::::::
NP_001 READIDGDGQVNYEEFVQMMTAK
100 110
149 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:02:38 2016 done: Thu Nov 3 15:02:39 2016
Total Scan time: 5.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]