Result of FASTA (omim) for
pF1KB4506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4506, 655 aa
1>>>pF1KB4506 655 - 655 aa - 655 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.8445+/-0.000483; mu= -6.4702+/- 0.030
mean_var=578.5855+/-120.239, 0's: 0 Z-trim(123.7): 322 B-trim: 33 in 1/55
Lambda= 0.053320
statistics sampled from 43720 (44083) to 43720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.517), width: 16
Scan time: 10.770
The best scores are: opt bits E(85289)
NP_001156757 (OMIM: 133450,612219) RNA-binding pro ( 655) 4722 378.3 4.8e-104
NP_005234 (OMIM: 133450,612219) RNA-binding protei ( 656) 4710 377.4 9e-104
XP_011528300 (OMIM: 133450,612219) PREDICTED: RNA- ( 656) 4710 377.4 9e-104
NP_053733 (OMIM: 133450,612219) RNA-binding protei ( 661) 4700 376.6 1.5e-103
XP_011528299 (OMIM: 133450,612219) PREDICTED: RNA- ( 657) 4698 376.5 1.7e-103
XP_016884136 (OMIM: 133450,612219) PREDICTED: RNA- ( 651) 4422 355.2 4.2e-97
XP_016884134 (OMIM: 133450,612219) PREDICTED: RNA- ( 652) 4410 354.3 8e-97
XP_016884135 (OMIM: 133450,612219) PREDICTED: RNA- ( 652) 4410 354.3 8e-97
XP_011528301 (OMIM: 133450,612219) PREDICTED: RNA- ( 653) 4398 353.4 1.5e-96
XP_016884150 (OMIM: 133450,612219) PREDICTED: RNA- ( 587) 4234 340.7 8.9e-93
XP_016884137 (OMIM: 133450,612219) PREDICTED: RNA- ( 638) 4062 327.5 9e-89
XP_011528302 (OMIM: 133450,612219) PREDICTED: RNA- ( 640) 4042 326.0 2.6e-88
XP_016884133 (OMIM: 133450,612219) PREDICTED: RNA- ( 668) 3937 317.9 7.2e-86
XP_011528298 (OMIM: 133450,612219) PREDICTED: RNA- ( 669) 3925 317.0 1.4e-85
XP_005261446 (OMIM: 133450,612219) PREDICTED: RNA- ( 669) 3920 316.6 1.8e-85
XP_011528297 (OMIM: 133450,612219) PREDICTED: RNA- ( 670) 3908 315.7 3.4e-85
XP_016884147 (OMIM: 133450,612219) PREDICTED: RNA- ( 600) 3597 291.7 5.1e-78
XP_016884148 (OMIM: 133450,612219) PREDICTED: RNA- ( 599) 3595 291.6 5.6e-78
NP_001156758 (OMIM: 133450,612219) RNA-binding pro ( 600) 3583 290.7 1.1e-77
XP_016884146 (OMIM: 133450,612219) PREDICTED: RNA- ( 601) 3432 279.0 3.4e-74
XP_016884138 (OMIM: 133450,612219) PREDICTED: RNA- ( 629) 3127 255.6 4e-67
XP_016884142 (OMIM: 133450,612219) PREDICTED: RNA- ( 614) 3119 255.0 6e-67
XP_016884141 (OMIM: 133450,612219) PREDICTED: RNA- ( 615) 3107 254.1 1.1e-66
XP_016884140 (OMIM: 133450,612219) PREDICTED: RNA- ( 615) 3107 254.1 1.1e-66
XP_016884145 (OMIM: 133450,612219) PREDICTED: RNA- ( 611) 3101 253.6 1.6e-66
XP_016884149 (OMIM: 133450,612219) PREDICTED: RNA- ( 597) 3099 253.4 1.7e-66
XP_016884139 (OMIM: 133450,612219) PREDICTED: RNA- ( 616) 3095 253.1 2.2e-66
XP_016884151 (OMIM: 133450,612219) PREDICTED: RNA- ( 582) 2935 240.8 1.1e-62
XP_016884143 (OMIM: 133450,612219) PREDICTED: RNA- ( 613) 2812 231.4 7.7e-60
XP_016884144 (OMIM: 133450,612219) PREDICTED: RNA- ( 612) 2810 231.2 8.6e-60
XP_011528303 (OMIM: 133450,612219) PREDICTED: RNA- ( 614) 2800 230.4 1.5e-59
XP_005261447 (OMIM: 133450,612219) PREDICTED: RNA- ( 613) 2798 230.3 1.6e-59
XP_016884155 (OMIM: 133450,612219) PREDICTED: RNA- ( 317) 2397 199.1 2.1e-50
XP_016884154 (OMIM: 133450,612219) PREDICTED: RNA- ( 317) 2397 199.1 2.1e-50
NP_001156759 (OMIM: 133450,612219) RNA-binding pro ( 354) 2226 186.0 2e-46
XP_016884152 (OMIM: 133450,612219) PREDICTED: RNA- ( 558) 1992 168.2 7.1e-41
XP_011528304 (OMIM: 133450,612219) PREDICTED: RNA- ( 597) 1771 151.3 9.7e-36
XP_016884153 (OMIM: 133450,612219) PREDICTED: RNA- ( 330) 1612 138.7 3.2e-32
NP_001164408 (OMIM: 137070,608030,614782) RNA-bind ( 522) 1072 97.4 1.4e-19
XP_011544083 (OMIM: 137070,608030,614782) PREDICTE ( 524) 1064 96.8 2.1e-19
NP_004951 (OMIM: 137070,608030,614782) RNA-binding ( 526) 1060 96.5 2.6e-19
NP_001164105 (OMIM: 137070,608030,614782) RNA-bind ( 525) 1059 96.4 2.7e-19
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 998 91.8 7.6e-18
NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592) 989 91.1 1.2e-17
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 917 85.5 5.2e-16
XP_005255290 (OMIM: 137070,608030,614782) PREDICTE ( 321) 642 64.1 9.1e-10
XP_011544084 (OMIM: 137070,608030,614782) PREDICTE ( 321) 642 64.1 9.1e-10
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 521 54.8 5.8e-07
XP_016874320 (OMIM: 108300,120140,132450,150600,15 (1305) 434 48.8 0.00015
XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 425 48.3 0.00028
>>NP_001156757 (OMIM: 133450,612219) RNA-binding protein (655 aa)
initn: 4722 init1: 4722 opt: 4722 Z-score: 1989.0 bits: 378.3 E(85289): 4.8e-104
Smith-Waterman score: 4722; 100.0% identity (100.0% similar) in 655 aa overlap (1-655:1-655)
10 20 30 40 50 60
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 GRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 TAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 GPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 QCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRG
550 560 570 580 590 600
610 620 630 640 650
pF1KB4 GRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
610 620 630 640 650
>>NP_005234 (OMIM: 133450,612219) RNA-binding protein EW (656 aa)
initn: 2626 init1: 2508 opt: 4710 Z-score: 1984.0 bits: 377.4 E(85289): 9e-104
Smith-Waterman score: 4710; 99.8% identity (99.8% similar) in 656 aa overlap (1-655:1-656)
10 20 30 40 50 60
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 GRGRGGFDRGGMSRGGRGGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_005 GRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 NQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFR
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
610 620 630 640 650
>>XP_011528300 (OMIM: 133450,612219) PREDICTED: RNA-bind (656 aa)
initn: 4518 init1: 4518 opt: 4710 Z-score: 1984.0 bits: 377.4 E(85289): 9e-104
Smith-Waterman score: 4710; 99.8% identity (99.8% similar) in 656 aa overlap (1-655:1-656)
10 20 30 40 50
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQ-AYGQQSYGTYGQPTDVSYTQAQTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_011 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 RGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 NQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFR
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
610 620 630 640 650
>>NP_053733 (OMIM: 133450,612219) RNA-binding protein EW (661 aa)
initn: 4239 init1: 4239 opt: 4700 Z-score: 1979.8 bits: 376.6 E(85289): 1.5e-103
Smith-Waterman score: 4700; 99.1% identity (99.1% similar) in 661 aa overlap (1-655:1-661)
10 20 30 40 50 60
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 YGQTAYATSYGQPPT------GYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAA
::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_053 YGQTAYATSYGQPPTVEGTSTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 QSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 QSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 VPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 VPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 QPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 QPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSM
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 SGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 SGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPD
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 GPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 GPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 WRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 WRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 RGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 RGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRP
610 620 630 640 650 660
pF1KB4 Y
:
NP_053 Y
>>XP_011528299 (OMIM: 133450,612219) PREDICTED: RNA-bind (657 aa)
initn: 2709 init1: 2508 opt: 4698 Z-score: 1979.0 bits: 376.5 E(85289): 1.7e-103
Smith-Waterman score: 4698; 99.7% identity (99.7% similar) in 657 aa overlap (1-655:1-657)
10 20 30 40 50
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQ-AYGQQSYGTYGQPTDVSYTQAQTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_011 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 RGRGRGGFDRGGMSRGGRGGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSD
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 RGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSD
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 CNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGF
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 RGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRPY
610 620 630 640 650
>>XP_016884136 (OMIM: 133450,612219) PREDICTED: RNA-bind (651 aa)
initn: 3993 init1: 3739 opt: 4422 Z-score: 1864.3 bits: 355.2 E(85289): 4.2e-97
Smith-Waterman score: 4502; 95.5% identity (95.5% similar) in 668 aa overlap (1-655:1-651)
10 20 30 40 50 60
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 GRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 TAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPG
430 440 450 460 470 480
490 500 510 520
pF1KB4 GPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNP-------------G
:::::::::::::::::::::::::::::::::::::::::::::: :
XP_016 GPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPSIGDFCCDVIVCRG
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB4 CGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMF
::::::::::::::: ::::::::::::::::::::::::::::
XP_016 CGNQNFAWRTECNQC-----------------GDRGRGGPGGMRGGRGGLMDRGGPGGMF
550 560 570 580
590 600 610 620 630 640
pF1KB4 RGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHR
590 600 610 620 630 640
650
pF1KB4 QERRDRPY
::::::::
XP_016 QERRDRPY
650
>>XP_016884134 (OMIM: 133450,612219) PREDICTED: RNA-bind (652 aa)
initn: 3895 init1: 2229 opt: 4410 Z-score: 1859.3 bits: 354.3 E(85289): 8e-97
Smith-Waterman score: 4490; 95.4% identity (95.4% similar) in 669 aa overlap (1-655:1-652)
10 20 30 40 50 60
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNR
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 GRGRGGFDRGGMSRGGRGGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 GRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
430 440 450 460 470 480
480 490 500 510 520
pF1KB4 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNP-------------
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPSIGDFCCDVIVCR
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB4 GCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGM
:::::::::::::::: :::::::::::::::::::::::::::
XP_016 GCGNQNFAWRTECNQC-----------------GDRGRGGPGGMRGGRGGLMDRGGPGGM
550 560 570 580
590 600 610 620 630 640
pF1KB4 FRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEH
590 600 610 620 630 640
650
pF1KB4 RQERRDRPY
:::::::::
XP_016 RQERRDRPY
650
>>XP_016884135 (OMIM: 133450,612219) PREDICTED: RNA-bind (652 aa)
initn: 3891 init1: 3535 opt: 4410 Z-score: 1859.3 bits: 354.3 E(85289): 8e-97
Smith-Waterman score: 4490; 95.4% identity (95.4% similar) in 669 aa overlap (1-655:1-652)
10 20 30 40 50
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQ-AYGQQSYGTYGQPTDVSYTQAQTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_016 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 RGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDN
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGP
430 440 450 460 470 480
480 490 500 510 520
pF1KB4 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNP-------------
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPSIGDFCCDVIVCR
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB4 GCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGM
:::::::::::::::: :::::::::::::::::::::::::::
XP_016 GCGNQNFAWRTECNQC-----------------GDRGRGGPGGMRGGRGGLMDRGGPGGM
550 560 570 580
590 600 610 620 630 640
pF1KB4 FRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEH
590 600 610 620 630 640
650
pF1KB4 RQERRDRPY
:::::::::
XP_016 RQERRDRPY
650
>>XP_011528301 (OMIM: 133450,612219) PREDICTED: RNA-bind (653 aa)
initn: 3691 init1: 2025 opt: 4398 Z-score: 1854.3 bits: 353.4 E(85289): 1.5e-96
Smith-Waterman score: 4478; 95.2% identity (95.2% similar) in 670 aa overlap (1-655:1-653)
10 20 30 40 50
pF1KB4 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQ-AYGQQSYGTYGQPTDVSYTQAQTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_011 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 RGRGRGGFDRGGMSRGGRGGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSD
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 RGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSD
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGG
430 440 450 460 470 480
480 490 500 510 520
pF1KB4 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNP------------
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPSIGDFCCDVIVC
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB4 -GCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGG
:::::::::::::::: ::::::::::::::::::::::::::
XP_011 RGCGNQNFAWRTECNQC-----------------GDRGRGGPGGMRGGRGGLMDRGGPGG
550 560 570 580
590 600 610 620 630 640
pF1KB4 MFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGE
590 600 610 620 630 640
650
pF1KB4 HRQERRDRPY
::::::::::
XP_011 HRQERRDRPY
650
>>XP_016884150 (OMIM: 133450,612219) PREDICTED: RNA-bind (587 aa)
initn: 4234 init1: 4234 opt: 4234 Z-score: 1786.7 bits: 340.7 E(85289): 8.9e-93
Smith-Waterman score: 4234; 100.0% identity (100.0% similar) in 580 aa overlap (76-655:8-587)
50 60 70 80 90 100
pF1KB4 QPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATV
::::::::::::::::::::::::::::::
XP_016 MQLSFVLGYTTPTAPQAYSQPVQGYGTGAYDTTTATV
10 20 30
110 120 130 140 150 160
pF1KB4 TTTQASYAAQSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTTQASYAAQSAYGTQPAYPAYGQQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGY
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB4 GQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSS
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB4 YGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGF
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB4 SGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDL
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB4 DLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB4 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGM
340 350 360 370 380 390
470 480 490 500 510 520
pF1KB4 PPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPN
400 410 420 430 440 450
530 540 550 560 570 580
pF1KB4 PGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGG
460 470 480 490 500 510
590 600 610 620 630 640
pF1KB4 MFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGE
520 530 540 550 560 570
650
pF1KB4 HRQERRDRPY
::::::::::
XP_016 HRQERRDRPY
580
655 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:02:08 2016 done: Fri Nov 4 03:02:09 2016
Total Scan time: 10.770 Total Display time: 0.200
Function used was FASTA [36.3.4 Apr, 2011]