Result of FASTA (omim) for
pF1KB4540
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4540, 348 aa
1>>>pF1KB4540 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5706+/-0.000369; mu= 17.1686+/- 0.023
mean_var=112.0947+/-22.252, 0's: 0 Z-trim(116.7): 112 B-trim: 0 in 0/52
Lambda= 0.121138
statistics sampled from 27927 (28050) to 27927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.329), width: 16
Scan time: 8.260
The best scores are: opt bits E(85289)
XP_016865560 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 2468 441.9 9.4e-124
NP_899645 (OMIM: 605675) E3 ubiquitin-protein liga ( 348) 2468 441.9 9.4e-124
XP_005268596 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 2468 441.9 9.4e-124
XP_005268598 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 2468 441.9 9.4e-124
XP_016865561 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 2468 441.9 9.4e-124
XP_005268597 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 2468 441.9 9.4e-124
NP_899648 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 2468 442.1 1.2e-123
NP_899647 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 2468 442.1 1.2e-123
NP_004281 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 2468 442.1 1.2e-123
NP_899646 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 2468 442.1 1.2e-123
XP_005268593 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 2468 442.1 1.2e-123
XP_011536016 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 2468 442.1 1.2e-123
NP_001188294 (OMIM: 605675) E3 ubiquitin-protein l ( 474) 2468 442.1 1.2e-123
XP_005268594 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 2468 442.1 1.2e-123
XP_016865559 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 2468 442.1 1.2e-123
XP_016865563 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 298) 1439 262.0 1.2e-69
XP_016865564 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 298) 1439 262.0 1.2e-69
XP_016865565 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 298) 1439 262.0 1.2e-69
XP_016865562 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 298) 1439 262.0 1.2e-69
XP_005268600 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 298) 1439 262.0 1.2e-69
XP_005268599 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 298) 1439 262.0 1.2e-69
XP_016865566 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 171) 877 163.6 2.9e-40
XP_011531575 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 432) 257 55.6 2.3e-07
XP_011531573 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 257 55.7 2.3e-07
XP_011531572 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 257 55.7 2.3e-07
XP_016861024 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 257 55.7 2.3e-07
XP_016861022 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 257 55.7 2.3e-07
XP_016861023 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 257 55.7 2.3e-07
XP_011531567 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 257 55.7 2.6e-07
XP_011531568 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 257 55.7 2.6e-07
XP_011531569 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 257 55.7 2.6e-07
XP_011531570 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 257 55.7 2.6e-07
NP_054643 (OMIM: 167000,211980,600116,602544,60757 ( 316) 205 46.4 0.0001
XP_016866398 (OMIM: 167000,211980,600116,602544,60 ( 385) 205 46.5 0.00011
NP_054642 (OMIM: 167000,211980,600116,602544,60757 ( 437) 205 46.6 0.00013
XP_011534165 (OMIM: 167000,211980,600116,602544,60 ( 464) 205 46.6 0.00013
NP_004553 (OMIM: 167000,211980,600116,602544,60757 ( 465) 205 46.6 0.00013
XP_016866397 (OMIM: 167000,211980,600116,602544,60 ( 503) 205 46.6 0.00014
XP_011519741 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 465) 201 45.9 0.00021
XP_011519740 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 498) 201 45.9 0.00022
NP_005735 (OMIM: 605624) E3 ubiquitin-protein liga ( 557) 201 46.0 0.00024
XP_011527441 (OMIM: 610924,615895) PREDICTED: ranB ( 502) 198 45.4 0.00032
NP_001304263 (OMIM: 605615) E3 ubiquitin-protein l ( 351) 185 43.0 0.0012
XP_016861030 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 185 43.0 0.0013
XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 185 43.0 0.0013
XP_016861026 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 185 43.0 0.0014
XP_016861027 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 185 43.0 0.0014
XP_016861025 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 185 43.0 0.0014
XP_016861028 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 185 43.0 0.0014
XP_011531577 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 185 43.0 0.0014
>>XP_016865560 (OMIM: 605675) PREDICTED: E3 ubiquitin-pr (348 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2342.7 bits: 441.9 E(85289): 9.4e-124
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
250 260 270 280 290 300
310 320 330 340
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
310 320 330 340
>>NP_899645 (OMIM: 605675) E3 ubiquitin-protein ligase R (348 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2342.7 bits: 441.9 E(85289): 9.4e-124
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
250 260 270 280 290 300
310 320 330 340
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
310 320 330 340
>>XP_005268596 (OMIM: 605675) PREDICTED: E3 ubiquitin-pr (348 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2342.7 bits: 441.9 E(85289): 9.4e-124
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
250 260 270 280 290 300
310 320 330 340
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
310 320 330 340
>>XP_005268598 (OMIM: 605675) PREDICTED: E3 ubiquitin-pr (348 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2342.7 bits: 441.9 E(85289): 9.4e-124
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
250 260 270 280 290 300
310 320 330 340
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
310 320 330 340
>>XP_016865561 (OMIM: 605675) PREDICTED: E3 ubiquitin-pr (348 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2342.7 bits: 441.9 E(85289): 9.4e-124
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
250 260 270 280 290 300
310 320 330 340
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
310 320 330 340
>>XP_005268597 (OMIM: 605675) PREDICTED: E3 ubiquitin-pr (348 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2342.7 bits: 441.9 E(85289): 9.4e-124
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
250 260 270 280 290 300
310 320 330 340
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
310 320 330 340
>>NP_899648 (OMIM: 605675) E3 ubiquitin-protein ligase R (474 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2341.1 bits: 442.1 E(85289): 1.2e-123
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:127-474)
10 20 30
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQR
::::::::::::::::::::::::::::::
NP_899 WLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQKKVQR
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB4 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB4 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB4 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB4 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB4 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
400 410 420 430 440 450
340
pF1KB4 LFYAVDVDDDIWEDEVED
::::::::::::::::::
NP_899 LFYAVDVDDDIWEDEVED
460 470
>>NP_899647 (OMIM: 605675) E3 ubiquitin-protein ligase R (474 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2341.1 bits: 442.1 E(85289): 1.2e-123
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:127-474)
10 20 30
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQR
::::::::::::::::::::::::::::::
NP_899 WLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQKKVQR
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB4 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB4 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB4 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB4 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB4 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
400 410 420 430 440 450
340
pF1KB4 LFYAVDVDDDIWEDEVED
::::::::::::::::::
NP_899 LFYAVDVDDDIWEDEVED
460 470
>>NP_004281 (OMIM: 605675) E3 ubiquitin-protein ligase R (474 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2341.1 bits: 442.1 E(85289): 1.2e-123
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:127-474)
10 20 30
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQR
::::::::::::::::::::::::::::::
NP_004 WLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQKKVQR
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB4 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB4 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB4 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB4 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB4 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
400 410 420 430 440 450
340
pF1KB4 LFYAVDVDDDIWEDEVED
::::::::::::::::::
NP_004 LFYAVDVDDDIWEDEVED
460 470
>>NP_899646 (OMIM: 605675) E3 ubiquitin-protein ligase R (474 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 2341.1 bits: 442.1 E(85289): 1.2e-123
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:127-474)
10 20 30
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQR
::::::::::::::::::::::::::::::
NP_899 WLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQKKVQR
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB4 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB4 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB4 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB4 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB4 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
400 410 420 430 440 450
340
pF1KB4 LFYAVDVDDDIWEDEVED
::::::::::::::::::
NP_899 LFYAVDVDDDIWEDEVED
460 470
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:35:54 2016 done: Fri Nov 4 20:35:56 2016
Total Scan time: 8.260 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]