Result of FASTA (omim) for pF1KB4563
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4563, 910 aa
  1>>>pF1KB4563 910 - 910 aa - 910 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4976+/-0.000411; mu= 20.0860+/- 0.026
 mean_var=71.3736+/-13.998, 0's: 0 Z-trim(111.5): 63  B-trim: 100 in 1/52
 Lambda= 0.151812
 statistics sampled from 19992 (20055) to 19992 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.235), width:  16
 Scan time: 11.920

The best scores are:                                      opt bits E(85289)
NP_055205 (OMIM: 602181) staphylococcal nuclease d ( 910) 5972 1318.0       0
XP_016867476 (OMIM: 602181) PREDICTED: staphylococ ( 607) 3889 861.6       0
XP_016871903 (OMIM: 605796) PREDICTED: tudor domai (1141)  219 58.0 3.1e-07
XP_016855618 (OMIM: 609501) PREDICTED: tudor and K ( 337)  199 53.3 2.3e-06
XP_016855617 (OMIM: 609501) PREDICTED: tudor and K ( 337)  199 53.3 2.3e-06
XP_016855619 (OMIM: 609501) PREDICTED: tudor and K ( 337)  199 53.3 2.3e-06
XP_005244913 (OMIM: 609501) PREDICTED: tudor and K ( 337)  199 53.3 2.3e-06
XP_005270036 (OMIM: 605796) PREDICTED: tudor domai (1113)  204 54.7 2.9e-06
XP_011538265 (OMIM: 605796) PREDICTED: tudor domai (1180)  204 54.7 3.1e-06
XP_005270035 (OMIM: 605796) PREDICTED: tudor domai (1189)  204 54.7 3.1e-06
XP_011538262 (OMIM: 605796) PREDICTED: tudor domai (1189)  204 54.7 3.1e-06
XP_011538263 (OMIM: 605796) PREDICTED: tudor domai (1189)  204 54.7 3.1e-06
XP_011538264 (OMIM: 605796) PREDICTED: tudor domai (1189)  204 54.7 3.1e-06
NP_942090 (OMIM: 605796) tudor domain-containing p (1189)  204 54.7 3.1e-06
XP_011538261 (OMIM: 605796) PREDICTED: tudor domai (1189)  204 54.7 3.1e-06
NP_001077433 (OMIM: 609501) tudor and KH domain-co ( 516)  199 53.4 3.3e-06
XP_016855615 (OMIM: 609501) PREDICTED: tudor and K ( 561)  199 53.4 3.5e-06
XP_016855614 (OMIM: 609501) PREDICTED: tudor and K ( 561)  199 53.4 3.5e-06
NP_001077432 (OMIM: 609501) tudor and KH domain-co ( 561)  199 53.4 3.5e-06
XP_016855616 (OMIM: 609501) PREDICTED: tudor and K ( 561)  199 53.4 3.5e-06
NP_006853 (OMIM: 609501) tudor and KH domain-conta ( 561)  199 53.4 3.5e-06
XP_016855611 (OMIM: 609501) PREDICTED: tudor and K ( 561)  199 53.4 3.5e-06
XP_016855612 (OMIM: 609501) PREDICTED: tudor and K ( 561)  199 53.4 3.5e-06
XP_016855613 (OMIM: 609501) PREDICTED: tudor and K ( 561)  199 53.4 3.5e-06
NP_001077434 (OMIM: 609501) tudor and KH domain-co ( 561)  199 53.4 3.5e-06
NP_001171922 (OMIM: 605793) RING finger protein 17 (1619)  194 52.6 1.8e-05
NP_112567 (OMIM: 605793) RING finger protein 17 is (1623)  194 52.6 1.8e-05
XP_011533462 (OMIM: 605793) PREDICTED: RING finger (1646)  194 52.6 1.9e-05
XP_011533461 (OMIM: 605793) PREDICTED: RING finger (1650)  194 52.6 1.9e-05
NP_001161831 (OMIM: 611200) tudor domain-containin (2066)  185 50.7 8.8e-05
NP_001010870 (OMIM: 611200) tudor domain-containin (2096)  185 50.7 8.9e-05
XP_016880680 (OMIM: 602449) PREDICTED: A-kinase an ( 903)  152 43.3  0.0066
XP_005257764 (OMIM: 602449) PREDICTED: A-kinase an ( 903)  152 43.3  0.0066
NP_001229832 (OMIM: 602449) A-kinase anchor protei ( 903)  152 43.3  0.0066
XP_016880679 (OMIM: 602449) PREDICTED: A-kinase an ( 903)  152 43.3  0.0066
XP_016880678 (OMIM: 602449) PREDICTED: A-kinase an ( 903)  152 43.3  0.0066
NP_001229831 (OMIM: 602449) A-kinase anchor protei ( 903)  152 43.3  0.0066
NP_003479 (OMIM: 602449) A-kinase anchor protein 1 ( 903)  152 43.3  0.0066
XP_005257766 (OMIM: 602449) PREDICTED: A-kinase an ( 903)  152 43.3  0.0066
XP_011533465 (OMIM: 605793) PREDICTED: RING finger (1261)  153 43.6  0.0075
XP_011533464 (OMIM: 605793) PREDICTED: RING finger (1498)  153 43.6  0.0087
XP_006719915 (OMIM: 605793) PREDICTED: RING finger (1531)  153 43.6  0.0088
XP_016876165 (OMIM: 605793) PREDICTED: RING finger (1611)  153 43.6  0.0092
XP_011533460 (OMIM: 605793) PREDICTED: RING finger (1657)  153 43.6  0.0094
XP_006719912 (OMIM: 605793) PREDICTED: RING finger (1672)  153 43.6  0.0095
XP_006719909 (OMIM: 605793) PREDICTED: RING finger (1692)  153 43.6  0.0096
XP_011533459 (OMIM: 605793) PREDICTED: RING finger (1695)  153 43.6  0.0096
XP_011533457 (OMIM: 605793) PREDICTED: RING finger (1699)  153 43.6  0.0096
XP_011533454 (OMIM: 605793) PREDICTED: RING finger (1699)  153 43.6  0.0096
XP_011533458 (OMIM: 605793) PREDICTED: RING finger (1699)  153 43.6  0.0096


>>NP_055205 (OMIM: 602181) staphylococcal nuclease domai  (910 aa)
 initn: 5972 init1: 5972 opt: 5972  Z-score: 7062.1  bits: 1318.0 E(85289):    0
Smith-Waterman score: 5972; 99.9% identity (99.9% similar) in 910 aa overlap (1-910:1-910)

               10        20        30        40        50        60
pF1KB4 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 IAVYTRGAEKLRAAERVAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_055 IAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 YEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIAS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 HPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB4 SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB4 TLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRA
              850       860       870       880       890       900

              910
pF1KB4 DDADEFGYSR
       ::::::::::
NP_055 DDADEFGYSR
              910

>>XP_016867476 (OMIM: 602181) PREDICTED: staphylococcal   (607 aa)
 initn: 3889 init1: 3889 opt: 3889  Z-score: 4599.1  bits: 861.6 E(85289):    0
Smith-Waterman score: 3889; 99.8% identity (99.8% similar) in 593 aa overlap (1-593:1-593)

               10        20        30        40        50        60
pF1KB4 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 IAVYTRGAEKLRAAERVAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
XP_016 IAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_016 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQRECLPDNSL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
                                                                   
XP_016 IIHLKYK                                                     
                                                                   

>>XP_016871903 (OMIM: 605796) PREDICTED: tudor domain-co  (1141 aa)
 initn: 311 init1: 114 opt: 219  Z-score: 250.9  bits: 58.0 E(85289): 3.1e-07
Smith-Waterman score: 219; 22.7% identity (53.5% similar) in 353 aa overlap (482-823:247-585)

             460       470       480       490       500           
pF1KB4 EALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH-RVADIS--
                                     ::   ... ..:. :: . :.  :....  
XP_016 ENKSSIETKDVEVNNKSDCPLGVTKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHP
        220       230       240       250       260       270      

      510       520       530       540         550        560     
pF1KB4 GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLP--KETCLITFLL-AGIECPRGAR
       ::          :.  ..  : .. .... . : :.:   :.:.  . .  .:.:   : 
XP_016 GDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQAIKC-FVAN
        280       290       300       310       320       330      

         570       580       590       600       610       620     
pF1KB4 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH
        .:.   ::. .: .    :: :....   ... .. .       ....  : :  :..:
XP_016 VIPA---EGN-WSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPN-SGKLLDH
            340        350       360       370       380        390

         630       640       650       660           670       680 
pF1KB4 ALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPV----EEVMPVLEEKERSAS
       .: .. .  . :.  ..    :.: ..  : :     :. .     ...: .   . .  
XP_016 VLIEMGYGLKPSGQDSK---KENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTLNVGDE
              400          410       420       430       440       

             690       700       710       720       730       740 
pF1KB4 YKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV
       .  : :..:     :. :....: .: .:. .. .   . :: .... :  :..: :.: 
XP_016 FCGV-VAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPP-RSDFYPAIGDICCAQFS
       450        460       470       480        490       500     

              750       760       770       780       790       800
pF1KB4 -DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAF
        : .:::: :    :  .. : :.:::: :.:   ::  . : .    :: :: . ..: 
XP_016 EDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLE--LPMQAIKCVLAG
         510       520       530       540       550         560   

              810       820       830       840       850       860
pF1KB4 IQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLVKEGL
       .. :.      .:.  . . .::                                     
XP_016 VK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDA
            570       580       590       600       610       620  

>>XP_016855618 (OMIM: 609501) PREDICTED: tudor and KH do  (337 aa)
 initn:  56 init1:  56 opt: 199  Z-score: 235.2  bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)

            620       630       640       650       660       670  
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
                                     ..: : . .. ..  . . : : . : ::.
XP_016 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
      10        20        30        40        50        60         

            680            690       700        710       720      
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
       .:    . :     :  :.:.      ::..: : . . ::.::...: .   .  : . 
XP_016 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
       70        80        90       100       110       120        

        730       740        750       760       770       780     
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
       .   . :..  : . ..: ::::::  .   ... ....:.:.    :   : .:   : 
XP_016 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
      130         140       150       160       170       180      

         790       800       810       820       830               
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
       .  :: :: : ..: : .:. :. . .:.:   :  . ..    : ..:.         :
XP_016 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
          190       200        210       220       230       240   

      840          850       860       870       880       890     
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
       .. : .  :.:   :.:: ::..: . .:. .. . .... ..:. . .  .: :.    
XP_016 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
            250       260        270       280       290       300 

         900       910                     
pF1KB4 GDFRADDADEFGYSR                     
                                           
XP_016 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
             310       320       330       

>>XP_016855617 (OMIM: 609501) PREDICTED: tudor and KH do  (337 aa)
 initn:  56 init1:  56 opt: 199  Z-score: 235.2  bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)

            620       630       640       650       660       670  
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
                                     ..: : . .. ..  . . : : . : ::.
XP_016 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
      10        20        30        40        50        60         

            680            690       700        710       720      
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
       .:    . :     :  :.:.      ::..: : . . ::.::...: .   .  : . 
XP_016 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
       70        80        90       100       110       120        

        730       740        750       760       770       780     
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
       .   . :..  : . ..: ::::::  .   ... ....:.:.    :   : .:   : 
XP_016 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
      130         140       150       160       170       180      

         790       800       810       820       830               
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
       .  :: :: : ..: : .:. :. . .:.:   :  . ..    : ..:.         :
XP_016 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
          190       200        210       220       230       240   

      840          850       860       870       880       890     
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
       .. : .  :.:   :.:: ::..: . .:. .. . .... ..:. . .  .: :.    
XP_016 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
            250       260        270       280       290       300 

         900       910                     
pF1KB4 GDFRADDADEFGYSR                     
                                           
XP_016 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
             310       320       330       

>>XP_016855619 (OMIM: 609501) PREDICTED: tudor and KH do  (337 aa)
 initn:  56 init1:  56 opt: 199  Z-score: 235.2  bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)

            620       630       640       650       660       670  
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
                                     ..: : . .. ..  . . : : . : ::.
XP_016 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
      10        20        30        40        50        60         

            680            690       700        710       720      
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
       .:    . :     :  :.:.      ::..: : . . ::.::...: .   .  : . 
XP_016 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
       70        80        90       100       110       120        

        730       740        750       760       770       780     
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
       .   . :..  : . ..: ::::::  .   ... ....:.:.    :   : .:   : 
XP_016 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
      130         140       150       160       170       180      

         790       800       810       820       830               
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
       .  :: :: : ..: : .:. :. . .:.:   :  . ..    : ..:.         :
XP_016 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
          190       200        210       220       230       240   

      840          850       860       870       880       890     
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
       .. : .  :.:   :.:: ::..: . .:. .. . .... ..:. . .  .: :.    
XP_016 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
            250       260        270       280       290       300 

         900       910                     
pF1KB4 GDFRADDADEFGYSR                     
                                           
XP_016 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
             310       320       330       

>>XP_005244913 (OMIM: 609501) PREDICTED: tudor and KH do  (337 aa)
 initn:  56 init1:  56 opt: 199  Z-score: 235.2  bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)

            620       630       640       650       660       670  
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
                                     ..: : . .. ..  . . : : . : ::.
XP_005 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
      10        20        30        40        50        60         

            680            690       700        710       720      
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
       .:    . :     :  :.:.      ::..: : . . ::.::...: .   .  : . 
XP_005 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
       70        80        90       100       110       120        

        730       740        750       760       770       780     
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
       .   . :..  : . ..: ::::::  .   ... ....:.:.    :   : .:   : 
XP_005 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
      130         140       150       160       170       180      

         790       800       810       820       830               
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
       .  :: :: : ..: : .:. :. . .:.:   :  . ..    : ..:.         :
XP_005 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
          190       200        210       220       230       240   

      840          850       860       870       880       890     
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
       .. : .  :.:   :.:: ::..: . .:. .. . .... ..:. . .  .: :.    
XP_005 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
            250       260        270       280       290       300 

         900       910                     
pF1KB4 GDFRADDADEFGYSR                     
                                           
XP_005 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
             310       320       330       

>>XP_005270036 (OMIM: 605796) PREDICTED: tudor domain-co  (1113 aa)
 initn: 338 init1: 114 opt: 204  Z-score: 233.3  bits: 54.7 E(85289): 2.9e-06
Smith-Waterman score: 211; 30.2% identity (60.4% similar) in 149 aa overlap (687-830:270-412)

        660       670       680       690         700       710    
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQ--DVETGTQLEKLMENM
                                     :::.     ::::  . :.   ...:  ..
XP_005 TKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASL
     240       250       260       270       280       290         

          720        730       740        750        760       770 
pF1KB4 RNDIAS-HPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVE-SPAKIHVFYIDYGNREV
       ..  :. :   : .: : .:: ::::. ::  : :: ...:. .  : ::.::::::.:.
XP_005 KETYANVH---EKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEI
     300          310       320       330       340       350      

             780       790       800       810       820       830 
pF1KB4 LPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVE
       .: .:.  :.  ..  ..:  : .  :.   .: . .  .: . ..   ...  : ... 
XP_005 IPLNRIYHLNRNID--LFPPCAIK-CFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIV
        360       370          380       390       400       410   

             840       850       860       870       880       890 
pF1KB4 HLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLN
                                                                   
XP_005 DILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTE
           420       430       440       450       460       470   

>--
 initn: 311 init1: 114 opt: 203  Z-score: 232.1  bits: 54.5 E(85289): 3.4e-06
Smith-Waterman score: 203; 29.7% identity (58.0% similar) in 138 aa overlap (687-823:500-633)

        660       670       680       690       700       710      
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN
                                     :..:     :. :....: .: .:. .. .
XP_005 MTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSK
     470       480       490       500       510       520         

        720       730       740        750       760       770     
pF1KB4 DIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPST
          . :: .... :  :..: :.:  : .:::: :    :  .. : :.:::: :.:   
XP_005 YCDQLPP-RSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLM
     530        540       550       560       570       580        

         780       790       800       810       820       830     
pF1KB4 RLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSA
       ::  . : .    :: :: . ..: .. :.      .:.  . . .::            
XP_005 RLCPIIPKLLE--LPMQAIKCVLAGVK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLE
      590         600       610        620       630       640     

         840       850       860       870       880       890     
pF1KB4 GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
                                                                   
XP_005 NSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEW
         650       660       670       680       690       700     

>>XP_011538265 (OMIM: 605796) PREDICTED: tudor domain-co  (1180 aa)
 initn: 338 init1: 114 opt: 204  Z-score: 233.0  bits: 54.7 E(85289): 3.1e-06
Smith-Waterman score: 211; 30.2% identity (60.4% similar) in 149 aa overlap (687-830:270-412)

        660       670       680       690         700       710    
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQ--DVETGTQLEKLMENM
                                     :::.     ::::  . :.   ...:  ..
XP_011 TKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASL
     240       250       260       270       280       290         

          720        730       740        750        760       770 
pF1KB4 RNDIAS-HPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVE-SPAKIHVFYIDYGNREV
       ..  :. :   : .: : .:: ::::. ::  : :: ...:. .  : ::.::::::.:.
XP_011 KETYANVH---EKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEI
     300          310       320       330       340       350      

             780       790       800       810       820       830 
pF1KB4 LPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVE
       .: .:.  :.  ..  ..:  : .  :.   .: . .  .: . ..   ...  : ... 
XP_011 IPLNRIYHLNRNID--LFPPCAIK-CFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIV
        360       370          380       390       400       410   

             840       850       860       870       880       890 
pF1KB4 HLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLN
                                                                   
XP_011 DILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTE
           420       430       440       450       460       470   

>--
 initn: 323 init1: 114 opt: 203  Z-score: 231.8  bits: 54.5 E(85289): 3.6e-06
Smith-Waterman score: 203; 29.7% identity (58.0% similar) in 138 aa overlap (687-823:500-633)

        660       670       680       690       700       710      
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN
                                     :..:     :. :....: .: .:. .. .
XP_011 MTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSK
     470       480       490       500       510       520         

        720       730       740        750       760       770     
pF1KB4 DIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPST
          . :: .... :  :..: :.:  : .:::: :    :  .. : :.:::: :.:   
XP_011 YCDQLPP-RSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLM
     530        540       550       560       570       580        

         780       790       800       810       820       830     
pF1KB4 RLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSA
       ::  . : .    :: :: . ..: .. :.      .:.  . . .::            
XP_011 RLCPIIPKLLE--LPMQAIKCVLAGVK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLE
      590         600       610        620       630       640     

         840       850       860       870       880       890     
pF1KB4 GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
                                                                   
XP_011 NSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEW
         650       660       670       680       690       700     

>>XP_005270035 (OMIM: 605796) PREDICTED: tudor domain-co  (1189 aa)
 initn: 338 init1: 114 opt: 204  Z-score: 232.9  bits: 54.7 E(85289): 3.1e-06
Smith-Waterman score: 211; 30.2% identity (60.4% similar) in 149 aa overlap (687-830:270-412)

        660       670       680       690         700       710    
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQ--DVETGTQLEKLMENM
                                     :::.     ::::  . :.   ...:  ..
XP_005 TKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASL
     240       250       260       270       280       290         

          720        730       740        750        760       770 
pF1KB4 RNDIAS-HPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVE-SPAKIHVFYIDYGNREV
       ..  :. :   : .: : .:: ::::. ::  : :: ...:. .  : ::.::::::.:.
XP_005 KETYANVH---EKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEI
     300          310       320       330       340       350      

             780       790       800       810       820       830 
pF1KB4 LPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVE
       .: .:.  :.  ..  ..:  : .  :.   .: . .  .: . ..   ...  : ... 
XP_005 IPLNRIYHLNRNID--LFPPCAIK-CFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIV
        360       370          380       390       400       410   

             840       850       860       870       880       890 
pF1KB4 HLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLN
                                                                   
XP_005 DILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTE
           420       430       440       450       460       470   

>--
 initn: 323 init1: 114 opt: 203  Z-score: 231.7  bits: 54.5 E(85289): 3.6e-06
Smith-Waterman score: 203; 29.7% identity (58.0% similar) in 138 aa overlap (687-823:500-633)

        660       670       680       690       700       710      
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN
                                     :..:     :. :....: .: .:. .. .
XP_005 MTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSK
     470       480       490       500       510       520         

        720       730       740        750       760       770     
pF1KB4 DIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPST
          . :: .... :  :..: :.:  : .:::: :    :  .. : :.:::: :.:   
XP_005 YCDQLPP-RSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLM
     530        540       550       560       570       580        

         780       790       800       810       820       830     
pF1KB4 RLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSA
       ::  . : .    :: :: . ..: .. :.      .:.  . . .::            
XP_005 RLCPIIPKLLE--LPMQAIKCVLAGVK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLE
      590         600       610        620       630       640     

         840       850       860       870       880       890     
pF1KB4 GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
                                                                   
XP_005 NSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEW
         650       660       670       680       690       700     




910 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:08:16 2016 done: Thu Nov  3 15:08:18 2016
 Total Scan time: 11.920 Total Display time:  0.150

Function used was FASTA [36.3.4 Apr, 2011]
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