FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB4585, 346 aa 1>>>pF1KB4585 346 - 346 aa - 346 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9152+/-0.000756; mu= 14.0509+/- 0.046 mean_var=87.8153+/-17.391, 0's: 0 Z-trim(110.9): 28 B-trim: 29 in 1/50 Lambda= 0.136864 statistics sampled from 11914 (11930) to 11914 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.366), width: 16 Scan time: 2.770 The best scores are: opt bits E(32554) CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX ( 346) 2329 469.4 1.9e-132 CCDS9507.1 EFNB2 gene_id:1948|Hs108|chr13 ( 333) 603 128.6 7.3e-30 CCDS11120.1 EFNB3 gene_id:1949|Hs108|chr17 ( 340) 589 125.8 5e-29 >>CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX (346 aa) initn: 2329 init1: 2329 opt: 2329 Z-score: 2491.3 bits: 469.4 E(32554): 1.9e-132 Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346) 10 20 30 40 50 60 pF1KB4 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB4 YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB4 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB4 FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS 250 260 270 280 290 300 310 320 330 340 pF1KB4 DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV :::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 310 320 330 340 >>CCDS9507.1 EFNB2 gene_id:1948|Hs108|chr13 (333 aa) initn: 1189 init1: 562 opt: 603 Z-score: 649.6 bits: 128.6 E(32554): 7.3e-30 Smith-Waterman score: 1219; 55.7% identity (77.3% similar) in 343 aa overlap (8-346:9-333) 10 20 30 40 50 pF1KB4 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDK : : : :: ::: : . :::. :.: : ::: :.:::.::.:::: CCDS95 MAVRRDSVWKYCWGVLMV---LCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDK 10 20 30 40 50 60 70 80 90 100 110 pF1KB4 LDIICPRAEAGR--PYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEF ::::::.... :::::.:.: .:: :. . . :..: .:.:.:.:::::::: CCDS95 LDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEF 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB4 SPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAV--TPEQ ::: ::::.:..:::: ::::::::::.:.:::::.::.:::.:::::: ... : .. CCDS95 SPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB4 LTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFN : :: :: .. . .: .: . . :.: : :.: ::. .... CCDS95 DPTRRPELEAGTNGRSSTTSPFVKPNPGSSTD-------------GNSAGHSGN--NILG 180 190 200 210 220 240 250 260 270 280 290 pF1KB4 SKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTA :.:::::....::.::..::: :.::::: :.:::::. :....:::::::.:: .... CCDS95 SEVALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNN 230 240 250 260 270 280 300 310 320 330 340 pF1KB4 GTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV :.:::::::::::... .::::::::::::::::::::::::::::::::: CCDS95 GSEPSDIIIPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 290 300 310 320 330 >>CCDS11120.1 EFNB3 gene_id:1949|Hs108|chr17 (340 aa) initn: 806 init1: 407 opt: 589 Z-score: 634.6 bits: 125.8 E(32554): 5e-29 Smith-Waterman score: 803; 40.6% identity (65.3% similar) in 357 aa overlap (4-346:8-340) 10 20 30 40 50 pF1KB4 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKI :: .: :... .. :.. :. :::: :.: : .: . : :.::.: CCDS11 MGPPHSGPGGVRVG----ALLLLGVLGLVSGLS--LEPVYWNSANKRFQAEGGYVLYPQI 10 20 30 40 50 60 70 80 90 100 110 pF1KB4 GDKLDIICPRAEAGRP-----YEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFT ::.::..::::. : ::.:::::: :. : . ::.:.::.::. ..::: CCDS11 GDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB4 IKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDP-NA :::::.::: : ::..:::::: .::.:. ::::. .:::: :: ::....:::.: .. CCDS11 IKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQSPRGG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB4 VTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDP ..:.. .. : : : . . . ::... :: .. . . : : . . .: CCDS11 AVPRKPVSEMPM-ERDRGAAHSLE-PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 180 190 200 210 220 230 240 250 260 270 280 pF1KB4 DGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQR-AAALSLSTLAS-P :. . :....::: .. :.:. : ...: . :.. .: CCDS11 GGL---ALLLLGVAGAGGAMCW-------------RRRRAKPSESRHPGPGSFGRGGSLG 240 250 260 270 290 300 310 320 330 340 pF1KB4 KGGSGTAG---TEPSDIIIPLR---TTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANI ::.: : .::... : :: ... .:::::::::::::::::::. ::::: :: CCDS11 LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPNI 280 290 300 310 320 330 pF1KB4 YYKV :::: CCDS11 YYKV 340 346 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 02:43:43 2016 done: Sat Nov 5 02:43:43 2016 Total Scan time: 2.770 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]