FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4604, 303 aa
  1>>>pF1KB4604 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2752+/-0.000846; mu= 16.7912+/- 0.051
 mean_var=91.4351+/-17.357, 0's: 0 Z-trim(109.1): 34  B-trim: 9 in 2/50
 Lambda= 0.134128
 statistics sampled from 10640 (10664) to 10640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.328), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS4318.1 SPARC gene_id:6678|Hs108|chr5           ( 303) 2131 422.2 2.4e-118
CCDS77939.1 SPARCL1 gene_id:8404|Hs108|chr4        ( 539) 1110 224.9 1.1e-58
CCDS3622.1 SPARCL1 gene_id:8404|Hs108|chr4         ( 664) 1110 225.0 1.2e-58


>>CCDS4318.1 SPARC gene_id:6678|Hs108|chr5                (303 aa)
 initn: 2131 init1: 2131 opt: 2131  Z-score: 2238.2  bits: 422.2 E(32554): 2.4e-118
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KB4 MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 RDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKD
              250       260       270       280       290       300

          
pF1KB4 LVI
       :::
CCDS43 LVI
          

>>CCDS77939.1 SPARCL1 gene_id:8404|Hs108|chr4             (539 aa)
 initn: 971 init1: 612 opt: 1110  Z-score: 1167.3  bits: 224.9 E(32554): 1.1e-58
Smith-Waterman score: 1110; 52.7% identity (78.0% similar) in 296 aa overlap (12-302:246-538)

                                  10        20        30        40 
pF1KB4                    MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEV
                                     : :: .   .  . .. : :.:.  ..  .
CCDS77 GDDDGDDGGTDGPRHSASDDYFIPSQAFLEAERAQSIAYHLKIEEQREKVHEN-ENIGTT
         220       230       240       250       260        270    

              50        60            70        80        90       
pF1KB4 SVGANPVQVEVGEFDDGAEETEEE----VVAENPCQNHHCKHGKVCELDENNTPMCVCQD
         : .  ... .: ... :::  :    : : . :.. .::.:..:. :... : :::::
CCDS77 EPGEHQ-EAKKAENSSNEEETSSEGNMRVHAVDSCMSFQCKRGHICKADQQGKPHCVCQD
          280        290       300       310       320       330   

       100       110       120       130       140       150       
pF1KB4 PTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLD
       :..:: :   ...::..::.:. ::::.::::: ::::::::.:.:::.: :: :: : :
CCDS77 PVTCP-PTKPLDQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIPTCTD
            340       350       360       370       380       390  

       160       170       180        190       200       210      
pF1KB4 SELTEFPLRMRDWLKNVLVTLYERD-EDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL
        :. .:::::::::::.:. ::: . :  . :.:::. .::::. .:::: :::::..::
CCDS77 FEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNEKQRNKVKKIYLDEKRLLAGDHPIDLL
            400       410       420       430       440       450  

        220       230       240       250       260       270      
pF1KB4 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLD
        :::.:::.::..::::::..:::::.:  :.:.::::::: :.::::: ::::: :: .
CCDS77 LRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDPN
            460       470       480       490       500       510  

        280       290       300   
pF1KB4 NDKYIALDEWAGCFGIKQKDIDKDLVI
       .::.:.: ::. :::::..:::..:. 
CCDS77 KDKHITLKEWGHCFGIKEEDIDENLLF
            520       530         

>>CCDS3622.1 SPARCL1 gene_id:8404|Hs108|chr4              (664 aa)
 initn: 1002 init1: 612 opt: 1110  Z-score: 1166.1  bits: 225.0 E(32554): 1.2e-58
Smith-Waterman score: 1110; 52.7% identity (78.0% similar) in 296 aa overlap (12-302:371-663)

                                  10        20        30        40 
pF1KB4                    MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEV
                                     : :: .   .  . .. : :.:.  ..  .
CCDS36 GDDDGDDGGTDGPRHSASDDYFIPSQAFLEAERAQSIAYHLKIEEQREKVHEN-ENIGTT
              350       360       370       380       390          

              50        60            70        80        90       
pF1KB4 SVGANPVQVEVGEFDDGAEETEEE----VVAENPCQNHHCKHGKVCELDENNTPMCVCQD
         : .  ... .: ... :::  :    : : . :.. .::.:..:. :... : :::::
CCDS36 EPGEHQ-EAKKAENSSNEEETSSEGNMRVHAVDSCMSFQCKRGHICKADQQGKPHCVCQD
     400        410       420       430       440       450        

       100       110       120       130       140       150       
pF1KB4 PTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLD
       :..:: :   ...::..::.:. ::::.::::: ::::::::.:.:::.: :: :: : :
CCDS36 PVTCP-PTKPLDQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIPTCTD
      460        470       480       490       500       510       

       160       170       180        190       200       210      
pF1KB4 SELTEFPLRMRDWLKNVLVTLYERD-EDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL
        :. .:::::::::::.:. ::: . :  . :.:::. .::::. .:::: :::::..::
CCDS36 FEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNEKQRNKVKKIYLDEKRLLAGDHPIDLL
       520       530       540       550       560       570       

        220       230       240       250       260       270      
pF1KB4 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLD
        :::.:::.::..::::::..:::::.:  :.:.::::::: :.::::: ::::: :: .
CCDS36 LRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDPN
       580       590       600       610       620       630       

        280       290       300   
pF1KB4 NDKYIALDEWAGCFGIKQKDIDKDLVI
       .::.:.: ::. :::::..:::..:. 
CCDS36 KDKHITLKEWGHCFGIKEEDIDENLLF
       640       650       660    




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:04:06 2016 done: Fri Nov  4 03:04:07 2016
 Total Scan time:  2.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]