FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4606, 123 aa
  1>>>pF1KB4606 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8418+/-0.000866; mu= 12.6302+/- 0.052
 mean_var=50.0869+/- 9.971, 0's: 0 Z-trim(104.6): 19  B-trim: 63 in 1/50
 Lambda= 0.181223
 statistics sampled from 7966 (7976) to 7966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.245), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS13635.1 KCNE2 gene_id:9992|Hs108|chr21         ( 123)  793 214.7 1.2e-56


>>CCDS13635.1 KCNE2 gene_id:9992|Hs108|chr21              (123 aa)
 initn: 793 init1: 793 opt: 793  Z-score: 1130.7  bits: 214.7 E(32554): 1.2e-56
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB4 MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK
               70        80        90       100       110       120

          
pF1KB4 MSP
       :::
CCDS13 MSP
          




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:29:27 2016 done: Sat Nov  5 06:29:27 2016
 Total Scan time:  1.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]