Result of FASTA (ccds) for
pF1KB4613
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4613, 265 aa
1>>>pF1KB4613 265 - 265 aa - 265 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2953+/-0.000681; mu= 13.4465+/- 0.042
mean_var=155.4063+/-32.927, 0's: 0 Z-trim(115.4): 55 B-trim: 0 in 0/51
Lambda= 0.102882
statistics sampled from 15876 (15932) to 15876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.489), width: 16
Scan time: 2.850
The best scores are: opt bits E(32554)
CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 ( 443) 1424 222.4 4.4e-58
CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2 ( 500) 1163 183.7 2.2e-46
CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX ( 361) 1058 167.9 8.6e-42
CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 ( 451) 1052 167.2 1.8e-41
CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 ( 436) 693 113.9 2e-25
CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 ( 438) 693 113.9 2e-25
CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1 ( 703) 691 113.8 3.3e-25
CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1 ( 755) 691 113.8 3.5e-25
CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1 ( 766) 691 113.9 3.5e-25
CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6 ( 360) 635 105.2 6.8e-23
CCDS55274.1 POU5F1B gene_id:5462|Hs108|chr8 ( 359) 630 104.4 1.1e-22
CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3 ( 291) 613 101.8 5.7e-22
CCDS46873.1 POU1F1 gene_id:5449|Hs108|chr3 ( 317) 596 99.3 3.5e-21
CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 ( 409) 515 87.4 1.7e-17
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 ( 338) 512 86.9 2.1e-17
CCDS47398.2 POU5F1 gene_id:5460|Hs108|chr6 ( 190) 499 84.7 5.4e-17
CCDS59489.1 POU5F2 gene_id:134187|Hs108|chr5 ( 328) 493 84.0 1.4e-16
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 ( 419) 490 83.7 2.3e-16
CCDS31803.1 POU6F1 gene_id:5463|Hs108|chr12 ( 301) 454 78.2 7.5e-15
CCDS81691.1 POU6F1 gene_id:5463|Hs108|chr12 ( 611) 454 78.6 1.2e-14
CCDS58665.1 POU2F2 gene_id:5452|Hs108|chr19 ( 400) 422 73.6 2.4e-13
CCDS33035.1 POU2F2 gene_id:5452|Hs108|chr19 ( 463) 422 73.7 2.7e-13
CCDS56094.1 POU2F2 gene_id:5452|Hs108|chr19 ( 467) 413 72.3 6.7e-13
CCDS56095.1 POU2F2 gene_id:5452|Hs108|chr19 ( 479) 413 72.4 6.8e-13
CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7 ( 655) 409 71.9 1.3e-12
>>CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 (443 aa)
initn: 1382 init1: 1382 opt: 1424 Z-score: 1156.3 bits: 222.4 E(32554): 4.4e-58
Smith-Waterman score: 1425; 79.6% identity (88.0% similar) in 275 aa overlap (2-265:170-443)
10 20
pF1KB4 MATAASNHY--SLLTSSASIVHAEPP---GG
..::. : :. .:........: .:
CCDS50 QQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNG
140 150 160 170 180 190
30 40 50 60 70 80
pF1KB4 MQQGAGG-----YREAQSLVQGDYGALQSNGHPLSHAHQWITAPPP-QGPPGHPGAHHDP
: :::: .... .. . . . :: :: :: ::: :::::::::::::
CCDS50 ML-GAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDP
200 210 220 230 240 250
90 100 110 120 130 140
pF1KB4 HSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 HSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSF
260 270 280 290 300 310
150 160 170 180 190 200
pF1KB4 KNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPK
320 330 340 350 360 370
210 220 230 240 250 260
pF1KB4 PSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGV
380 390 400 410 420 430
pF1KB4 QTPVQ
:::::
CCDS50 QTPVQ
440
>--
initn: 446 init1: 430 opt: 437 Z-score: 364.6 bits: 75.9 E(32554): 5.5e-14
Smith-Waterman score: 437; 89.3% identity (89.3% similar) in 75 aa overlap (1-75:1-75)
10 20 30 40 50 60
pF1KB4 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 WITAPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL
:::: : : :
CCDS50 WITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHG
70 80 90 100 110 120
>>CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2 (500 aa)
initn: 1218 init1: 1078 opt: 1163 Z-score: 946.3 bits: 183.7 E(32554): 2.2e-46
Smith-Waterman score: 1216; 74.4% identity (79.6% similar) in 270 aa overlap (18-265:233-500)
10 20 30 40
pF1KB4 MATAASNHYSLLTSSASIVHAEP-PGGMQQGAGGYREA---QSLVQG
.. : : ::: :::: .. .::.:
CCDS33 AAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRG
210 220 230 240 250 260
50 60 70 80 90
pF1KB4 DYGALQSNGHPLSHAHQWITAPP-P---QGPPGH--------PGAH-HDPHSDEDTPTSD
: : . : : :. :: : :::: : :: . :::::::::::::
CCDS33 DTPELAEHHH--HHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSD
270 280 290 300 310 320
100 110 120 130 140 150
pF1KB4 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL
330 340 350 360 370 380
160 170 180 190 200 210
pF1KB4 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA
::::::::::.::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS33 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLA
390 400 410 420 430 440
220 230 240 250 260
pF1KB4 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGG----SRDTPP-HHGVQTPVQ
:::::::::::::::::::::::::::: .:::. : :::: :::.:: ::
CCDS33 DSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHHGLQTSVQ
450 460 470 480 490 500
>>CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX (361 aa)
initn: 1141 init1: 1024 opt: 1058 Z-score: 863.7 bits: 167.9 E(32554): 8.6e-42
Smith-Waterman score: 1058; 77.2% identity (84.9% similar) in 219 aa overlap (46-257:143-359)
20 30 40 50 60 70
pF1KB4 ASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNG--HPLSHAHQWITAPPPQGPPGH
: :. .: : . : : . :: :
CCDS14 AWGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDH
120 130 140 150 160 170
80 90 100 110 120 130
pF1KB4 P--GAHH-DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI
:.:: . ::::.:::::.:::::::::::::::::::::::::::::::::::::::
CCDS14 GELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI
180 190 200 210 220 230
140 150 160 170 180 190
pF1KB4 CRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGA
::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::.
CCDS14 CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGV
240 250 260 270 280 290
200 210 220 230 240 250
pF1KB4 LESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGG
::.::::::::.::::.::::::::::::::::::::::::::::::: : ..::.
CCDS14 LETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQP--HEVYSH
300 310 320 330 340 350
260
pF1KB4 S--RDTPPHHGVQTPVQ
. :: :
CCDS14 TVKTDTSCHDL
360
>>CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 (451 aa)
initn: 1086 init1: 995 opt: 1052 Z-score: 857.8 bits: 167.2 E(32554): 1.8e-41
Smith-Waterman score: 1059; 66.5% identity (75.4% similar) in 272 aa overlap (20-263:161-427)
10 20 30 40
pF1KB4 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGA--
.: ::: :.:: : :. : ::
CCDS30 GSTAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPGG---GGGGL--AGMLAAGGGGAGP
140 150 160 170 180
50 60 70 80
pF1KB4 -LQSNGHPLSHAHQWITAPPPQ-GPPGHP------------GAHHDP-----------HS
:. : .: : .:::. : :: .:: : ::
CCDS30 GLHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHS
190 200 210 220 230 240
90 100 110 120 130 140
pF1KB4 DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN
:::.:.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN
250 260 270 280 290 300
150 160 170 180 190 200
pF1KB4 MCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS
::::::::::::::.::::::::..::::::::::::::::::.::::::::::::::::
CCDS30 MCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPS
310 320 330 340 350 360
210 220 230 240 250 260
pF1KB4 AQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGT-LPGAEDVYGGSRDTPPHHGVQ
:.:::.:::::::::::::::::::::::::::: .:. : .:::. .. : :..
CCDS30 AHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGAS
370 380 390 400 410 420
pF1KB4 TPVQ
:
CCDS30 PPSAPPPPPPAALHHHHHHTLPGSVQ
430 440 450
>>CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 (436 aa)
initn: 704 init1: 388 opt: 693 Z-score: 570.0 bits: 113.9 E(32554): 2e-25
Smith-Waterman score: 693; 50.0% identity (69.6% similar) in 260 aa overlap (11-256:104-359)
10 20 30
pF1KB4 MATAASNHYSLLTSSASIVHAEPPG--GMQQGAGGYREAQ
: . : .. :: :.: . . . :
CCDS84 GNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQ
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB4 S---LVQGDYG-ALQSNGHPLSHAHQWITAPPPQGPPGHPGAHHDPHSD-EDTPTS-DDL
: : : : : :. ::: . . : .. : .: : : : :.. ..:
CCDS84 SGLLLPQTGPGLASQAFGHPGLPGSS--LEPHLEASQHLPVPKHLPSSGGADEPSDLEEL
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB4 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK
:.::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::::::::.:
CCDS84 EKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK
200 210 220 230 240 250
160 170 180 190 200
pF1KB4 WLEEADSSSG-----SPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEI
::..:.:: . .:.: ... :::::::::::.... .::..: ::::..::
CCDS84 WLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEI
260 270 280 290 300 310
210 220 230 240 250 260
pF1KB4 TSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ
. .:..:..::::::::::::::::::.. : .: : ::. :: . :
CCDS84 SMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVAT-PIKPPVYN-SRLVSPSGSLGPLSVP
320 330 340 350 360
CCDS84 PVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRW
370 380 390 400 410 420
>>CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 (438 aa)
initn: 704 init1: 388 opt: 693 Z-score: 570.0 bits: 113.9 E(32554): 2e-25
Smith-Waterman score: 693; 50.0% identity (69.6% similar) in 260 aa overlap (11-256:106-361)
10 20 30
pF1KB4 MATAASNHYSLLTSSASIVHAEPPG--GMQQGAGGYREAQ
: . : .. :: :.: . . . :
CCDS58 GNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQ
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB4 S---LVQGDYG-ALQSNGHPLSHAHQWITAPPPQGPPGHPGAHHDPHSD-EDTPTS-DDL
: : : : : :. ::: . . : .. : .: : : : :.. ..:
CCDS58 SGLLLPQTGPGLASQAFGHPGLPGSS--LEPHLEASQHLPVPKHLPSSGGADEPSDLEEL
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB4 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK
:.::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::::::::.:
CCDS58 EKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK
200 210 220 230 240 250
160 170 180 190 200
pF1KB4 WLEEADSSSG-----SPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEI
::..:.:: . .:.: ... :::::::::::.... .::..: ::::..::
CCDS58 WLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEI
260 270 280 290 300 310
210 220 230 240 250 260
pF1KB4 TSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ
. .:..:..::::::::::::::::::.. : .: : ::. :: . :
CCDS58 SMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVAT-PIKPPVYN-SRLVSPSGSLGPLSVP
320 330 340 350 360 370
CCDS58 PVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRW
380 390 400 410 420 430
>>CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1 (703 aa)
initn: 661 init1: 372 opt: 691 Z-score: 566.0 bits: 113.8 E(32554): 3.3e-25
Smith-Waterman score: 709; 50.2% identity (72.9% similar) in 255 aa overlap (8-240:156-405)
10 20 30
pF1KB4 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREA
: . . :... .. : :.: : .:
CCDS55 MLAGGQITGDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQ----GLLQA
130 140 150 160 170 180
40 50 60 70 80
pF1KB4 QSLV-----QGDYGALQSN------GHPLSHAHQWITAPPPQGPPGHPGAHH--DPHSDE
:.:. :.. . :::. ..: . .. :.: : : : .. . : : :
CCDS55 QNLLTQLPQQSQANLLQSQPSITLTSQPATPTRT-IAATPIQTLPQSQSTPKRIDTPSLE
190 200 210 220 230 240
90 100 110 120 130 140
pF1KB4 DTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
. ..:::::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::
CCDS55 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC
250 260 270 280 290 300
150 160 170 180 190
pF1KB4 KLKPLLNKWLEEA-----DSSSGSPTSIDKIAAQG--RKRKKRTSIEVSVKGALESHFLK
::::::.:::..: ::: .::..... . .: :.::::::::.... :::. ::.
CCDS55 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE
310 320 330 340 350 360
200 210 220 230 240 250
pF1KB4 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP--GGTLPGAEDVYGGSRDTP
::...::: .::.:..::::.:::::::::::::..:: :::
CCDS55 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSL
370 380 390 400 410 420
260
pF1KB4 PHHGVQTPVQ
CCDS55 VATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVT
430 440 450 460 470 480
>>CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1 (755 aa)
initn: 661 init1: 372 opt: 691 Z-score: 565.6 bits: 113.8 E(32554): 3.5e-25
Smith-Waterman score: 709; 50.2% identity (72.9% similar) in 255 aa overlap (8-240:208-457)
10 20 30
pF1KB4 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREA
: . . :... .. : :.: : .:
CCDS55 LSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQ----GLLQA
180 190 200 210 220 230
40 50 60 70 80
pF1KB4 QSLV-----QGDYGALQSN------GHPLSHAHQWITAPPPQGPPGHPGAHH--DPHSDE
:.:. :.. . :::. ..: . .. :.: : : : .. . : : :
CCDS55 QNLLTQLPQQSQANLLQSQPSITLTSQPATPTRT-IAATPIQTLPQSQSTPKRIDTPSLE
240 250 260 270 280 290
90 100 110 120 130 140
pF1KB4 DTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
. ..:::::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::
CCDS55 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC
300 310 320 330 340 350
150 160 170 180 190
pF1KB4 KLKPLLNKWLEEA-----DSSSGSPTSIDKIAAQG--RKRKKRTSIEVSVKGALESHFLK
::::::.:::..: ::: .::..... . .: :.::::::::.... :::. ::.
CCDS55 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE
360 370 380 390 400 410
200 210 220 230 240 250
pF1KB4 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP--GGTLPGAEDVYGGSRDTP
::...::: .::.:..::::.:::::::::::::..:: :::
CCDS55 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSL
420 430 440 450 460 470
260
pF1KB4 PHHGVQTPVQ
CCDS55 VATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVT
480 490 500 510 520 530
>>CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1 (766 aa)
initn: 661 init1: 372 opt: 691 Z-score: 565.5 bits: 113.9 E(32554): 3.5e-25
Smith-Waterman score: 709; 50.2% identity (72.9% similar) in 255 aa overlap (8-240:219-468)
10 20 30
pF1KB4 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREA
: . . :... .. : :.: : .:
CCDS12 LSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQ----GLLQA
190 200 210 220 230 240
40 50 60 70 80
pF1KB4 QSLV-----QGDYGALQSN------GHPLSHAHQWITAPPPQGPPGHPGAHH--DPHSDE
:.:. :.. . :::. ..: . .. :.: : : : .. . : : :
CCDS12 QNLLTQLPQQSQANLLQSQPSITLTSQPATPTRT-IAATPIQTLPQSQSTPKRIDTPSLE
250 260 270 280 290 300
90 100 110 120 130 140
pF1KB4 DTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
. ..:::::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::
CCDS12 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC
310 320 330 340 350 360
150 160 170 180 190
pF1KB4 KLKPLLNKWLEEA-----DSSSGSPTSIDKIAAQG--RKRKKRTSIEVSVKGALESHFLK
::::::.:::..: ::: .::..... . .: :.::::::::.... :::. ::.
CCDS12 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE
370 380 390 400 410 420
200 210 220 230 240 250
pF1KB4 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP--GGTLPGAEDVYGGSRDTP
::...::: .::.:..::::.:::::::::::::..:: :::
CCDS12 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSL
430 440 450 460 470 480
260
pF1KB4 PHHGVQTPVQ
CCDS12 VATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVT
490 500 510 520 530 540
>>CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6 (360 aa)
initn: 703 init1: 617 opt: 635 Z-score: 524.4 bits: 105.2 E(32554): 6.8e-23
Smith-Waterman score: 635; 52.7% identity (75.6% similar) in 205 aa overlap (32-233:88-287)
10 20 30 40 50 60
pF1KB4 ATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGA-LQSNGHPLSHAHQ
:: . .: .:. :. ..::. : .
CCDS34 WGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQP--EGEAGVGVESNSDGASP--E
60 70 80 90 100 110
70 80 90 100 110
pF1KB4 WITAPPPQGPPGHPGAHHDPHSDEDTPT-SDDLEQFAKQFKQRRIKLGFTQADVGLALGT
:. : . ...:. ..: . . .:::::: .::.:: ::.:::::::.::.
CCDS34 PCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGV
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB4 LYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSG-SPTSIDKIAAQGRKRK
:.:.:::::::::::::::::::::::.:::.::.::::.. . . . .:.::::
CCDS34 LFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRK
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB4 KRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPG
::::: :.: ::. ::.::::. :.:. .:..: :::.:::::::::::: ::
CCDS34 -RTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDY
240 250 260 270 280 290
240 250 260
pF1KB4 GTLPGAEDVYGGSRDTPPHHGVQTPVQ
CCDS34 AQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTT
300 310 320 330 340 350
265 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:38:18 2016 done: Thu Nov 3 21:38:18 2016
Total Scan time: 2.850 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]