Result of FASTA (ccds) for
pF1KB4640
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4640, 614 aa
1>>>pF1KB4640 614 - 614 aa - 614 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5212+/-0.000941; mu= 13.7737+/- 0.057
mean_var=94.3964+/-18.253, 0's: 0 Z-trim(107.4): 16 B-trim: 0 in 0/51
Lambda= 0.132007
statistics sampled from 9546 (9550) to 9546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.293), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS73092.1 NCOA4 gene_id:8031|Hs108|chr10 ( 614) 4212 812.7 0
CCDS73093.1 NCOA4 gene_id:8031|Hs108|chr10 ( 630) 4212 812.7 0
CCDS73094.1 NCOA4 gene_id:8031|Hs108|chr10 ( 650) 4205 811.4 0
>>CCDS73092.1 NCOA4 gene_id:8031|Hs108|chr10 (614 aa)
initn: 4212 init1: 4212 opt: 4212 Z-score: 4337.5 bits: 812.7 E(32554): 0
Smith-Waterman score: 4212; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)
10 20 30 40 50 60
pF1KB4 MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK
550 560 570 580 590 600
610
pF1KB4 VDKEKWLYRTPLQM
::::::::::::::
CCDS73 VDKEKWLYRTPLQM
610
>>CCDS73093.1 NCOA4 gene_id:8031|Hs108|chr10 (630 aa)
initn: 4212 init1: 4212 opt: 4212 Z-score: 4337.3 bits: 812.7 E(32554): 0
Smith-Waterman score: 4212; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:17-630)
10 20 30 40
pF1KB4 MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN
::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB4 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB4 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB4 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB4 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB4 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB4 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH
550 560 570 580 590 600
590 600 610
pF1KB4 YGLPAVCDLFACMQLKVDKEKWLYRTPLQM
::::::::::::::::::::::::::::::
CCDS73 YGLPAVCDLFACMQLKVDKEKWLYRTPLQM
610 620 630
>>CCDS73094.1 NCOA4 gene_id:8031|Hs108|chr10 (650 aa)
initn: 4205 init1: 4205 opt: 4205 Z-score: 4329.9 bits: 811.4 E(32554): 0
Smith-Waterman score: 4205; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:17-629)
10 20 30 40
pF1KB4 MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN
::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB4 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB4 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB4 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB4 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB4 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB4 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH
550 560 570 580 590 600
590 600 610
pF1KB4 YGLPAVCDLFACMQLKVDKEKWLYRTPLQM
:::::::::::::::::::::::::::::
CCDS73 YGLPAVCDLFACMQLKVDKEKWLYRTPLQAYFKMNFQDVTVGNFQIPCGF
610 620 630 640 650
614 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:16:40 2016 done: Thu Nov 3 15:16:40 2016
Total Scan time: 2.620 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]