FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4675, 494 aa
  1>>>pF1KB4675 494 - 494 aa - 494 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0762+/-0.000963; mu= 14.4003+/- 0.058
 mean_var=87.8853+/-17.166, 0's: 0 Z-trim(105.2): 79  B-trim: 12 in 1/52
 Lambda= 0.136809
 statistics sampled from 8231 (8310) to 8231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.255), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS32780.1 USP14 gene_id:9097|Hs108|chr18         ( 494) 3245 650.9 9.1e-187
CCDS32781.1 USP14 gene_id:9097|Hs108|chr18         ( 459) 2589 521.4 8.1e-148


>>CCDS32780.1 USP14 gene_id:9097|Hs108|chr18              (494 aa)
 initn: 3245 init1: 3245 opt: 3245  Z-score: 3466.5  bits: 650.9 E(32554): 9.1e-187
Smith-Waterman score: 3245; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB4 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 IKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
              430       440       450       460       470       480

              490    
pF1KB4 GPRRVEIMEEESEQ
       ::::::::::::::
CCDS32 GPRRVEIMEEESEQ
              490    

>>CCDS32781.1 USP14 gene_id:9097|Hs108|chr18              (459 aa)
 initn: 3015 init1: 2589 opt: 2589  Z-score: 2767.2  bits: 521.4 E(32554): 8.1e-148
Smith-Waterman score: 2949; 92.9% identity (92.9% similar) in 494 aa overlap (1-494:1-459)

               10        20        30        40        50        60
pF1KB4 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 IKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATV
       :::::                                   ::::::::::::::::::::
CCDS32 IKIKN-----------------------------------MELPCGLTNLGNTCYMNATV
                                                  70        80     

              130       140       150       160       170       180
pF1KB4 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
          90       100       110       120       130       140     

              190       200       210       220       230       240
pF1KB4 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
         150       160       170       180       190       200     

              250       260       270       280       290       300
pF1KB4 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
         210       220       230       240       250       260     

              310       320       330       340       350       360
pF1KB4 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
         270       280       290       300       310       320     

              370       380       390       400       410       420
pF1KB4 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
         330       340       350       360       370       380     

              430       440       450       460       470       480
pF1KB4 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
         390       400       410       420       430       440     

              490    
pF1KB4 GPRRVEIMEEESEQ
       ::::::::::::::
CCDS32 GPRRVEIMEEESEQ
         450         




494 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:59:54 2016 done: Sat Nov  5 05:59:55 2016
 Total Scan time:  3.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]