Result of FASTA (omim) for
pF1KB4675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4675, 494 aa
1>>>pF1KB4675 494 - 494 aa - 494 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4888+/-0.000412; mu= 18.0125+/- 0.026
mean_var=97.6259+/-19.137, 0's: 0 Z-trim(112.1): 190 B-trim: 213 in 1/61
Lambda= 0.129805
statistics sampled from 20695 (20905) to 20695 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.245), width: 16
Scan time: 8.360
The best scores are: opt bits E(85289)
NP_005142 (OMIM: 607274) ubiquitin carboxyl-termin ( 494) 3245 618.7 1.2e-176
NP_001032411 (OMIM: 607274) ubiquitin carboxyl-ter ( 459) 2589 495.8 1.1e-139
XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 189 46.5 0.00028
XP_011542290 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 189 46.5 0.00028
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 185 45.5 0.00029
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 185 45.5 0.0003
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 185 45.5 0.0003
NP_004642 (OMIM: 300050) ubiquitin carboxyl-termin ( 963) 190 46.9 0.00032
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 185 45.8 0.00052
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 185 45.9 0.00056
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 185 45.9 0.00056
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 185 45.9 0.0006
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 185 45.9 0.00061
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 180 45.0 0.0011
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 180 45.0 0.0012
XP_011539358 (OMIM: 615146) PREDICTED: ubiquitin c ( 600) 163 41.6 0.0075
XP_006721395 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879352 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_011521745 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_011521743 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879358 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_011521742 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879354 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879356 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879355 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879357 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016879353 (OMIM: 609818) PREDICTED: ubiquitin c ( 602) 163 41.6 0.0075
XP_016856218 (OMIM: 615146) PREDICTED: ubiquitin c ( 752) 163 41.7 0.0088
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 163 41.7 0.0091
NP_005144 (OMIM: 609818) ubiquitin carboxyl-termin ( 798) 163 41.7 0.0092
NP_001259004 (OMIM: 609818) ubiquitin carboxyl-ter ( 802) 163 41.7 0.0092
XP_016856215 (OMIM: 615146) PREDICTED: ubiquitin c ( 804) 163 41.7 0.0092
XP_016856213 (OMIM: 615146) PREDICTED: ubiquitin c ( 812) 163 41.7 0.0093
XP_016856214 (OMIM: 615146) PREDICTED: ubiquitin c ( 812) 163 41.7 0.0093
XP_016856212 (OMIM: 615146) PREDICTED: ubiquitin c ( 820) 163 41.7 0.0094
NP_963920 (OMIM: 615146) ubiquitin carboxyl-termin ( 828) 163 41.7 0.0094
XP_011539357 (OMIM: 615146) PREDICTED: ubiquitin c ( 843) 163 41.8 0.0096
XP_005270706 (OMIM: 615146) PREDICTED: ubiquitin c ( 851) 163 41.8 0.0096
>>NP_005142 (OMIM: 607274) ubiquitin carboxyl-terminal h (494 aa)
initn: 3245 init1: 3245 opt: 3245 Z-score: 3292.5 bits: 618.7 E(85289): 1.2e-176
Smith-Waterman score: 3245; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KB4 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 IKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
430 440 450 460 470 480
490
pF1KB4 GPRRVEIMEEESEQ
::::::::::::::
NP_005 GPRRVEIMEEESEQ
490
>>NP_001032411 (OMIM: 607274) ubiquitin carboxyl-termina (459 aa)
initn: 3015 init1: 2589 opt: 2589 Z-score: 2629.0 bits: 495.8 E(85289): 1.1e-139
Smith-Waterman score: 2949; 92.9% identity (92.9% similar) in 494 aa overlap (1-494:1-459)
10 20 30 40 50 60
pF1KB4 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 IKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATV
::::: ::::::::::::::::::::
NP_001 IKIKN-----------------------------------MELPCGLTNLGNTCYMNATV
70 80
130 140 150 160 170 180
pF1KB4 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB4 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKK
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB4 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB4 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB4 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB4 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY
390 400 410 420 430 440
490
pF1KB4 GPRRVEIMEEESEQ
::::::::::::::
NP_001 GPRRVEIMEEESEQ
450
>>XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin carbo (690 aa)
initn: 259 init1: 141 opt: 189 Z-score: 197.7 bits: 46.5 E(85289): 0.00028
Smith-Waterman score: 189; 27.7% identity (55.0% similar) in 202 aa overlap (82-266:11-204)
60 70 80 90 100
pF1KB4 TLKDDDWGNIKIKNGMTLLMMGSADALPEEPSAKT-VFVEDMTEEQLA-SAMELPCGLTN
:::. :. ..:.::. ... :::::
XP_005 METRKKDGTWPSAQLHVMNNNMSEEDEDFKGQPGICGLTN
10 20 30 40
110 120 130 140 150 160
pF1KB4 LGNTCYMNATVQCIRSVPELKDALKR--YAGALRASGEMASAQYITAALRDLFDSM--DK
:::::.::...::. .::.: . . : : . .. :. : :: . .
XP_005 LGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGH
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB4 TSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED-----
: .: .. . :.: :: : : :.:..: .. :.. :. ..
XP_005 HRSIVPHVFKNKVGHFA-SQFL--G----YQQHDSQELLSFLLDGLHEDLNRVKKKEYVE
110 120 130 140 150
230 240 250 260 270
pF1KB4 --DSVKETDSSSASAATPSKKKS----LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQ
:.. . :. :. : ..:. ..: : :. :..:. : . . ::
XP_005 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGL-FKSTLVCPDCGNVSVTFDPFCYLS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB4 LSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYK
XP_005 VPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGISPERMMVADV
220 230 240 250 260 270
>>XP_011542290 (OMIM: 300050) PREDICTED: ubiquitin carbo (690 aa)
initn: 259 init1: 141 opt: 189 Z-score: 197.7 bits: 46.5 E(85289): 0.00028
Smith-Waterman score: 189; 27.7% identity (55.0% similar) in 202 aa overlap (82-266:11-204)
60 70 80 90 100
pF1KB4 TLKDDDWGNIKIKNGMTLLMMGSADALPEEPSAKT-VFVEDMTEEQLA-SAMELPCGLTN
:::. :. ..:.::. ... :::::
XP_011 METRKKDGTWPSAQLHVMNNNMSEEDEDFKGQPGICGLTN
10 20 30 40
110 120 130 140 150 160
pF1KB4 LGNTCYMNATVQCIRSVPELKDALKR--YAGALRASGEMASAQYITAALRDLFDSM--DK
:::::.::...::. .::.: . . : : . .. :. : :: . .
XP_011 LGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGH
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB4 TSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED-----
: .: .. . :.: :: : : :.:..: .. :.. :. ..
XP_011 HRSIVPHVFKNKVGHFA-SQFL--G----YQQHDSQELLSFLLDGLHEDLNRVKKKEYVE
110 120 130 140 150
230 240 250 260 270
pF1KB4 --DSVKETDSSSASAATPSKKKS----LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQ
:.. . :. :. : ..:. ..: : :. :..:. : . . ::
XP_011 LCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGL-FKSTLVCPDCGNVSVTFDPFCYLS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB4 LSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYK
XP_011 VPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGISPERMMVADV
220 230 240 250 260 270
>>XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin carbo (341 aa)
initn: 237 init1: 83 opt: 185 Z-score: 197.6 bits: 45.5 E(85289): 0.00029
Smith-Waterman score: 201; 22.1% identity (47.4% similar) in 380 aa overlap (90-457:21-334)
60 70 80 90 100 110
pF1KB4 NIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNAT
.:. ::. : ::.:.::::: :..
XP_016 MTVRNIASICNMGTNASALEKDIGPEQFP-INEHYFGLVNFGNTCYCNSV
10 20 30 40
120 130 140 150 160 170
pF1KB4 VQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM---DKTSSSIPPIILL
.: . ... . : .... . . . . : ::: :. : . ::: ..
XP_016 LQALYFCRPFRENVLAY------KAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFI
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB4 QFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR----VLQQKLEAIEDDSVKETDSSSAS
. :. : .:.::::.: .. .::.. . .... .. . .
XP_016 SRLRKENDLF------DNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEP
110 120 130 140 150
240 250 260 270 280
pF1KB4 AATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYL-----F
: . . . . . ..: . . .: . : :.. :. :.:: ..:... :
XP_016 AENNKPELTWVHEIFQGTLTNETRCLNCET--VSSKDEDFLDLSVDVEQNTSITHCLRDF
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB4 TGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDV
.. . : : : . : ....:: :.... :: : :. .:. :
XP_016 SNTET-LCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRV
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB4 KFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFA
::: : .. ::: .
XP_016 VFPLELRLF------------------------------NTS-----------------S
280
410 420 430 440 450 460
pF1KB4 DDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLS
: .. . .::: ::..: : . . :::.. :: .. :. :::: : .
XP_016 DAVNLDR--MYDLVAVVVHCGSGPNRGHYITIVK-SHGFWLLFDDDIVEVGLQIILQ
290 300 310 320 330 340
470 480 490
pF1KB4 GGGDWHIAYVLLYGPRRVEIMEEESEQ
>>NP_001127695 (OMIM: 612849) ubiquitin carboxyl-termina (359 aa)
initn: 241 init1: 83 opt: 185 Z-score: 197.3 bits: 45.5 E(85289): 0.0003
Smith-Waterman score: 208; 21.9% identity (47.4% similar) in 411 aa overlap (90-483:14-358)
60 70 80 90 100 110
pF1KB4 NIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNAT
.:. ::. : ::.:.::::: :..
NP_001 MNCFQGTNASALEKDIGPEQFP-INEHYFGLVNFGNTCYCNSV
10 20 30 40
120 130 140 150 160 170
pF1KB4 VQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM---DKTSSSIPPIILL
.: . ... . : .... . . . . : ::: :. : . ::: ..
NP_001 LQALYFCRPFRENVLAY------KAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFI
50 60 70 80 90
180 190 200 210 220 230
pF1KB4 QFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR----VLQQKLEAIEDDSVKETDSSSAS
. :. : .:.::::.: .. .::.. . .... .. . .
NP_001 SRLRKENDLF------DNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEP
100 110 120 130 140 150
240 250 260 270 280
pF1KB4 AATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYL-----F
: . . . . . ..: . . .: . : :.. :. :.:: ..:... :
NP_001 AENNKPELTWVHEIFQGTLTNETRCLNCET--VSSKDEDFLDLSVDVEQNTSITHCLRDF
160 170 180 190 200
290 300 310 320 330 340
pF1KB4 TGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDV
.. . : : : . : ....:: :.... :: : :. .:. :
NP_001 SNTET-LCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRV
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB4 KFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFA
::: : .. ::: .
NP_001 VFPLELRLF------------------------------NTS-----------------S
270 280
410 420 430 440 450 460
pF1KB4 DDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLS
: .. . .::: ::..: : . . :::.. :: .. :. :::: : . . : ..
NP_001 DAVNLDR--MYDLVAVVVHCGSGPNRGHYITIVK-SHGFWLLFDDDIVEKIDAQAIEEFY
290 300 310 320 330
470 480 490
pF1KB4 G-----GGDWHIAYVLLYGPRRVEIMEEESEQ
: . . . .:.:.: :
NP_001 GLTSDISKNSESGYILFYQSRE
340 350
>>NP_073743 (OMIM: 612849) ubiquitin carboxyl-terminal h (366 aa)
initn: 241 init1: 83 opt: 185 Z-score: 197.2 bits: 45.5 E(85289): 0.0003
Smith-Waterman score: 208; 21.9% identity (47.4% similar) in 411 aa overlap (90-483:21-365)
60 70 80 90 100 110
pF1KB4 NIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNAT
.:. ::. : ::.:.::::: :..
NP_073 MTVRNIASICNMGTNASALEKDIGPEQFP-INEHYFGLVNFGNTCYCNSV
10 20 30 40
120 130 140 150 160 170
pF1KB4 VQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM---DKTSSSIPPIILL
.: . ... . : .... . . . . : ::: :. : . ::: ..
NP_073 LQALYFCRPFRENVLAY------KAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFI
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB4 QFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR----VLQQKLEAIEDDSVKETDSSSAS
. :. : .:.::::.: .. .::.. . .... .. . .
NP_073 SRLRKENDLF------DNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEP
110 120 130 140 150
240 250 260 270 280
pF1KB4 AATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYL-----F
: . . . . . ..: . . .: . : :.. :. :.:: ..:... :
NP_073 AENNKPELTWVHEIFQGTLTNETRCLNCET--VSSKDEDFLDLSVDVEQNTSITHCLRDF
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB4 TGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDV
.. . : : : . : ....:: :.... :: : :. .:. :
NP_073 SNTET-LCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRV
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB4 KFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFA
::: : .. ::: .
NP_073 VFPLELRLF------------------------------NTS-----------------S
280
410 420 430 440 450 460
pF1KB4 DDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLS
: .. . .::: ::..: : . . :::.. :: .. :. :::: : . . : ..
NP_073 DAVNLDR--MYDLVAVVVHCGSGPNRGHYITIVK-SHGFWLLFDDDIVEKIDAQAIEEFY
290 300 310 320 330 340
470 480 490
pF1KB4 G-----GGDWHIAYVLLYGPRRVEIMEEESEQ
: . . . .:.:.: :
NP_073 GLTSDISKNSESGYILFYQSRE
350 360
>>NP_004642 (OMIM: 300050) ubiquitin carboxyl-terminal h (963 aa)
initn: 234 init1: 141 opt: 190 Z-score: 196.9 bits: 46.9 E(85289): 0.00032
Smith-Waterman score: 190; 27.0% identity (54.0% similar) in 215 aa overlap (69-266:271-477)
40 50 60 70 80 90
pF1KB4 VQPARQKVMVKGGTLKDDDWGNIKIKNGMTLLMMGSADALPEEPSAKT-VFVEDMTEEQL
:..: . :::. :. ..:.::.
NP_004 RLWAKNSEGSLDRLYDTHITVLDAALETGQLIIMETRKKDGTWPSAQLHVMNNNMSEEDE
250 260 270 280 290 300
100 110 120 130 140 150
pF1KB4 A-SAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKR--YAGALRASGEMASAQYITA
... ::::::::::.::...::. .::.: . . : : . .. :.
NP_004 DFKGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAE
310 320 330 340 350 360
160 170 180 190 200 210
pF1KB4 ALRDLFDSM--DKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQ
: :: . . : .: .. . :.: :: : : :.:..: .. :.
NP_004 AYADLVKQAWSGHHRSIVPHVFKNKVGHFA-SQF-----LG-YQQHDSQELLSFLLDGLH
370 380 390 400 410
220 230 240 250 260
pF1KB4 QKLEAIED-------DSVKETDSSSASAATPSKKKS----LIDQFFGVEFETTMKCTESE
. :. .. :.. . :. :. : ..:. ..: : :. :..:. : .
NP_004 EDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGL-FKSTLVCPDCG
420 430 440 450 460 470
270 280 290 300 310 320
pF1KB4 EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLP
. ::
NP_004 NVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKH
480 490 500 510 520 530
>>XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin carbo (775 aa)
initn: 135 init1: 135 opt: 185 Z-score: 193.0 bits: 45.8 E(85289): 0.00052
Smith-Waterman score: 185; 27.5% identity (51.5% similar) in 200 aa overlap (82-266:266-457)
60 70 80 90 100 110
pF1KB4 TLKDDDWGNIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLG
:: . :..: . . :::.:::
XP_006 STLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLG
240 250 260 270 280 290
120 130 140 150 160
pF1KB4 NTCYMNATVQCIRSVPELKDAL--KRYAGALRASGEMASAQYITAALRDLFDSM--DKTS
:::.::...::. ..: : . . .: : .. .. :. . .:. .: : :
XP_006 NTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFS
300 310 320 330 340 350
170 180 190 200 210 220
pF1KB4 SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED-------
: . : ..: :::. : : ::: .: .. :.. :. :.
XP_006 YVTPRAFKTQVGRFA-PQFS--G----YQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLK
360 370 380 390 400
230 240 250 260 270
pF1KB4 DSVKETDSSSASAATPSKKKS----LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLS
:. . :. : : .. : ..: : :. :..:. : : . ::
XP_006 DADGRPDKVVAEEAWENHLKRNDSIIVDIFHGL-FKSTLVCPECAKISVTFDPFCYLTLP
410 420 430 440 450 460
280 290 300 310 320 330
pF1KB4 CFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK
XP_006 LPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYN
470 480 490 500 510 520
>>XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin carbo (860 aa)
initn: 206 init1: 135 opt: 185 Z-score: 192.4 bits: 45.9 E(85289): 0.00056
Smith-Waterman score: 185; 27.5% identity (51.5% similar) in 200 aa overlap (82-266:145-336)
60 70 80 90 100 110
pF1KB4 TLKDDDWGNIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLG
:: . :..: . . :::.:::
XP_016 STLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLG
120 130 140 150 160 170
120 130 140 150 160
pF1KB4 NTCYMNATVQCIRSVPELKDAL--KRYAGALRASGEMASAQYITAALRDLFDSM--DKTS
:::.::...::. ..: : . . .: : .. .. :. . .:. .: : :
XP_016 NTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFS
180 190 200 210 220 230
170 180 190 200 210 220
pF1KB4 SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED-------
: . : ..: :::. : : ::: .: .. :.. :. :.
XP_016 YVTPRAFKTQVGRFA-PQFS--G----YQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLK
240 250 260 270 280
230 240 250 260 270
pF1KB4 DSVKETDSSSASAATPSKKKS----LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLS
:. . :. : : .. : ..: : :. :..:. : : . ::
XP_016 DADGRPDKVVAEEAWENHLKRNDSIIVDIFHGL-FKSTLVCPECAKISVTFDPFCYLTLP
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB4 CFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK
XP_016 LPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYN
350 360 370 380 390 400
494 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:59:55 2016 done: Sat Nov 5 05:59:56 2016
Total Scan time: 8.360 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]