Result of FASTA (omim) for
pF1KB4679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4679, 201 aa
1>>>pF1KB4679 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0679+/-0.00033; mu= 13.6237+/- 0.021
mean_var=243.2416+/-55.269, 0's: 0 Z-trim(121.2): 76 B-trim: 2184 in 1/55
Lambda= 0.082235
statistics sampled from 37285 (37410) to 37285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.439), width: 16
Scan time: 6.390
The best scores are: opt bits E(85289)
NP_001071634 (OMIM: 600812) serine/arginine-rich s ( 201) 1431 181.7 7.1e-46
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248) 1307 167.1 2.1e-41
NP_003760 (OMIM: 601943) serine/arginine-rich spli ( 221) 865 114.6 1.2e-25
XP_011540253 (OMIM: 601940) PREDICTED: serine/argi ( 464) 464 67.5 3.7e-11
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494) 464 67.6 3.8e-11
XP_005268056 (OMIM: 600914) PREDICTED: serine/argi ( 271) 456 66.2 5.5e-11
XP_005268057 (OMIM: 600914) PREDICTED: serine/argi ( 271) 456 66.2 5.5e-11
XP_016877082 (OMIM: 600914) PREDICTED: serine/argi ( 271) 456 66.2 5.5e-11
NP_001034554 (OMIM: 600914) serine/arginine-rich s ( 272) 456 66.2 5.5e-11
NP_008856 (OMIM: 600914) serine/arginine-rich spli ( 272) 456 66.2 5.5e-11
NP_001307143 (OMIM: 600914) serine/arginine-rich s ( 272) 456 66.2 5.5e-11
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344) 449 65.5 1.1e-10
NP_003008 (OMIM: 603364) serine/arginine-rich spli ( 164) 257 42.2 0.00054
>>NP_001071634 (OMIM: 600812) serine/arginine-rich splic (201 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 944.6 bits: 181.7 E(85289): 7.1e-46
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
130 140 150 160 170 180
190 200
pF1KB4 RSHEVGYTRILFFDQNWIQWS
:::::::::::::::::::::
NP_001 RSHEVGYTRILFFDQNWIQWS
190 200
>>NP_008855 (OMIM: 600812) serine/arginine-rich splicing (248 aa)
initn: 1303 init1: 1303 opt: 1307 Z-score: 864.3 bits: 167.1 E(85289): 2.1e-41
Smith-Waterman score: 1307; 96.9% identity (98.4% similar) in 192 aa overlap (1-190:1-192)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
130 140 150 160 170 180
190 200
pF1KB4 RSHE--VGYTRILFFDQNWIQWS
:::: ..: :.
NP_008 RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPR
190 200 210 220 230 240
>>NP_003760 (OMIM: 601943) serine/arginine-rich splicing (221 aa)
initn: 507 init1: 462 opt: 865 Z-score: 581.3 bits: 114.6 E(85289): 1.2e-25
Smith-Waterman score: 875; 68.9% identity (82.4% similar) in 193 aa overlap (1-190:1-182)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::: . :: :..: :::::::: :.: ::.::.::::: ::.:.::::.: :::::.
NP_003 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
10 20 30 40 50
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
::::::::::.:::.:::: ::::::::. :: :: ::: : :::.:::
NP_003 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
60 70 80 90 100
120 130 140 150 160 170
pF1KB4 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
. ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
NP_003 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
110 120 130 140 150 160
180 190 200
pF1KB4 FRSHE--VGYTRILFFDQNWIQWS
::::: ..: :.
NP_003 FRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
170 180 190 200 210 220
>>XP_011540253 (OMIM: 601940) PREDICTED: serine/arginine (464 aa)
initn: 443 init1: 143 opt: 464 Z-score: 321.3 bits: 67.5 E(85289): 3.7e-11
Smith-Waterman score: 464; 45.4% identity (66.1% similar) in 174 aa overlap (17-185:3-170)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
:.:.: : . : .:.: : :: : ..:::: : :::
XP_011 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGG---APRGRYGPPSR
:.: :::.:::: .: : : :. :: :. : : :.: .: : . : .::::.:
XP_011 FDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKL
.: :..: .: :::::::.::.::.: :::.. : . ::.::: :: :..::
XP_011 -TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKL
110 120 130 140 150 160
180 190 200
pF1KB4 DNTKFRSHEVGYTRILFFDQNWIQWS
:.:. ....
XP_011 DGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSGSRSRSKSRSRSQSRSRSKKEKSRSP
170 180 190 200 210 220
>>NP_005617 (OMIM: 601940) serine/arginine-rich splicing (494 aa)
initn: 443 init1: 143 opt: 464 Z-score: 321.1 bits: 67.6 E(85289): 3.8e-11
Smith-Waterman score: 464; 45.4% identity (66.1% similar) in 174 aa overlap (17-185:3-170)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
:.:.: : . : .:.: : :: : ..:::: : :::
NP_005 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGG---APRGRYGPPSR
:.: :::.:::: .: : : :. :: :. : : :.: .: : . : .::::.:
NP_005 FDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKL
.: :..: .: :::::::.::.::.: :::.. : . ::.::: :: :..::
NP_005 -TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKL
110 120 130 140 150 160
180 190 200
pF1KB4 DNTKFRSHEVGYTRILFFDQNWIQWS
:.:. ....
NP_005 DGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS
170 180 190 200 210 220
>>XP_005268056 (OMIM: 600914) PREDICTED: serine/arginine (271 aa)
initn: 474 init1: 175 opt: 456 Z-score: 318.3 bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::...: : : : ::.: : :: ::::::: :: :.:::
XP_005 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
:::::::.:::: :: . . :. .: :. .:: ::: : . .. ::. : . :
XP_005 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
:.:::..: .: ::::::: ::.::.: .::..: . :::::. :. :..
XP_005 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
110 120 130 140 150 160
180 190 200
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS
::.. .. ....
XP_005 KLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS
170 180 190 200 210 220
>>XP_005268057 (OMIM: 600914) PREDICTED: serine/arginine (271 aa)
initn: 474 init1: 175 opt: 456 Z-score: 318.3 bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::...: : : : ::.: : :: ::::::: :: :.:::
XP_005 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
:::::::.:::: :: . . :. .: :. .:: ::: : . .. ::. : . :
XP_005 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
:.:::..: .: ::::::: ::.::.: .::..: . :::::. :. :..
XP_005 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
110 120 130 140 150 160
180 190 200
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS
::.. .. ....
XP_005 KLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS
170 180 190 200 210 220
>>XP_016877082 (OMIM: 600914) PREDICTED: serine/arginine (271 aa)
initn: 474 init1: 175 opt: 456 Z-score: 318.3 bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::...: : : : ::.: : :: ::::::: :: :.:::
XP_016 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
:::::::.:::: :: . . :. .: :. .:: ::: : . .. ::. : . :
XP_016 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
:.:::..: .: ::::::: ::.::.: .::..: . :::::. :. :..
XP_016 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
110 120 130 140 150 160
180 190 200
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS
::.. .. ....
XP_016 KLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS
170 180 190 200 210 220
>>NP_001034554 (OMIM: 600914) serine/arginine-rich splic (272 aa)
initn: 474 init1: 175 opt: 456 Z-score: 318.3 bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::...: : : : ::.: : :: ::::::: :: :.:::
NP_001 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
:::::::.:::: :: . . :. .: :. .:: ::: : . .. ::. : . :
NP_001 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
:.:::..: .: ::::::: ::.::.: .::..: . :::::. :. :..
NP_001 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
110 120 130 140 150 160
180 190 200
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS
::.. .. ....
NP_001 KLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR
170 180 190 200 210 220
>>NP_008856 (OMIM: 600914) serine/arginine-rich splicing (272 aa)
initn: 474 init1: 175 opt: 456 Z-score: 318.3 bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)
10 20 30 40 50 60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::...: : : : ::.: : :: ::::::: :: :.:::
NP_008 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
10 20 30 40
70 80 90 100 110
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
:::::::.:::: :: . . :. .: :. .:: ::: : . .. ::. : . :
NP_008 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
:.:::..: .: ::::::: ::.::.: .::..: . :::::. :. :..
NP_008 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
110 120 130 140 150 160
180 190 200
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS
::.. .. ....
NP_008 KLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR
170 180 190 200 210 220
201 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:19:52 2016 done: Thu Nov 3 15:19:53 2016
Total Scan time: 6.390 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]