FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4690, 895 aa
  1>>>pF1KB4690 895 - 895 aa - 895 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.3617+/-0.00108; mu= -6.5403+/- 0.066
 mean_var=514.6177+/-104.991, 0's: 0 Z-trim(116.9): 25  B-trim: 198 in 1/54
 Lambda= 0.056537
 statistics sampled from 17571 (17593) to 17571 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.54), width:  16
 Scan time:  5.690

The best scores are:                                      opt bits E(32554)
CCDS31612.1 SF3B2 gene_id:10992|Hs108|chr11        ( 895) 6094 512.1 1.8e-144


>>CCDS31612.1 SF3B2 gene_id:10992|Hs108|chr11             (895 aa)
 initn: 6094 init1: 6094 opt: 6094  Z-score: 2707.0  bits: 512.1 E(32554): 1.8e-144
Smith-Waterman score: 6094; 100.0% identity (100.0% similar) in 895 aa overlap (1-895:1-895)

               10        20        30        40        50        60
pF1KB4 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB4 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
              790       800       810       820       830       840

              850       860       870       880       890     
pF1KB4 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
              850       860       870       880       890     




895 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:10:58 2016 done: Fri Nov  4 03:10:59 2016
 Total Scan time:  5.690 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]