FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB4690, 895 aa 1>>>pF1KB4690 895 - 895 aa - 895 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.3617+/-0.00108; mu= -6.5403+/- 0.066 mean_var=514.6177+/-104.991, 0's: 0 Z-trim(116.9): 25 B-trim: 198 in 1/54 Lambda= 0.056537 statistics sampled from 17571 (17593) to 17571 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.54), width: 16 Scan time: 5.690 The best scores are: opt bits E(32554) CCDS31612.1 SF3B2 gene_id:10992|Hs108|chr11 ( 895) 6094 512.1 1.8e-144 >>CCDS31612.1 SF3B2 gene_id:10992|Hs108|chr11 (895 aa) initn: 6094 init1: 6094 opt: 6094 Z-score: 2707.0 bits: 512.1 E(32554): 1.8e-144 Smith-Waterman score: 6094; 100.0% identity (100.0% similar) in 895 aa overlap (1-895:1-895) 10 20 30 40 50 60 pF1KB4 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB4 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB4 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB4 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB4 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB4 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB4 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB4 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB4 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB4 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB4 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB4 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB4 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM 790 800 810 820 830 840 850 860 870 880 890 pF1KB4 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 850 860 870 880 890 895 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 03:10:58 2016 done: Fri Nov 4 03:10:59 2016 Total Scan time: 5.690 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]