Result of FASTA (ccds) for
pF1KB4702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4702, 574 aa
1>>>pF1KB4702 574 - 574 aa - 574 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2655+/-0.00135; mu= 1.1495+/- 0.080
mean_var=347.3669+/-83.863, 0's: 0 Z-trim(106.2): 106 B-trim: 301 in 1/51
Lambda= 0.068815
statistics sampled from 8752 (8833) to 8752 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.271), width: 16
Scan time: 3.510
The best scores are: opt bits E(32554)
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 3872 399.5 5.9e-111
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 3714 383.8 3.1e-106
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 3633 375.7 7.9e-104
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 699 83.9 1.9e-16
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 697 83.7 2.2e-16
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 671 81.1 1.3e-15
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 664 80.4 2.1e-15
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 632 77.2 1.9e-14
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 561 70.2 2.5e-12
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 509 65.0 9.1e-11
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 3872 init1: 3872 opt: 3872 Z-score: 2105.5 bits: 399.5 E(32554): 5.9e-111
Smith-Waterman score: 3872; 100.0% identity (100.0% similar) in 574 aa overlap (1-574:1-574)
10 20 30 40 50 60
pF1KB4 MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 TRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 GESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 HQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 HQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGTAENARSCIRAYFYDLHETLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGTAENARSCIRAYFYDLHETLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 TRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 SSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 SSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRS
490 500 510 520 530 540
550 560 570
pF1KB4 WYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA
::::::::::::::::::::::::::::::::::
CCDS39 WYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA
550 560 570
>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 (569 aa)
initn: 3714 init1: 3714 opt: 3714 Z-score: 2020.7 bits: 383.8 E(32554): 3.1e-106
Smith-Waterman score: 3714; 100.0% identity (100.0% similar) in 550 aa overlap (1-550:1-550)
10 20 30 40 50 60
pF1KB4 MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 TRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 HQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGTAENARSCIRAYFYDLHETLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGTAENARSCIRAYFYDLHETLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 TRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 SSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRS
490 500 510 520 530 540
550 560 570
pF1KB4 WYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA
::::::::::
CCDS43 WYIQGCDARSVFQIICDQYTGKEVVTEKG
550 560
>>CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 (546 aa)
initn: 3633 init1: 3633 opt: 3633 Z-score: 1977.5 bits: 375.7 E(32554): 7.9e-104
Smith-Waterman score: 3633; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KB4 MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 TRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 GESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 HQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 HQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGTAENARSCIRAYFYDLHETLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGTAENARSCIRAYFYDLHETLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 TRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 SSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 SSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRS
490 500 510 520 530 540
550 560 570
pF1KB4 WYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA
CCDS39 CFSDNM
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 698 init1: 558 opt: 699 Z-score: 408.8 bits: 83.9 E(32554): 1.9e-16
Smith-Waterman score: 699; 62.8% identity (86.0% similar) in 164 aa overlap (402-565:15-177)
380 390 400 410 420 430
pF1KB4 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
: :.:.. .:::.:::::::.::: :..
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
10 20 30 40
440 450 460 470 480 490
pF1KB4 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
:::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..::.
CCDS15 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR
50 60 70 80 90 100
500 510 520 530 540 550
pF1KB4 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
:: ..:.: :::::.::.::::::. .:... :::. :.::.: :.::::. : ::
CCDS15 EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSG
110 120 130 140 150 160
560 570
pF1KB4 MGLYEGLDWLSRQLVAAGVLDVA
:::::::::: ::
CCDS15 DGLYEGLDWLSNQLRNQK
170 180
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 694 init1: 558 opt: 697 Z-score: 407.7 bits: 83.7 E(32554): 2.2e-16
Smith-Waterman score: 697; 62.3% identity (85.6% similar) in 167 aa overlap (399-565:13-177)
370 380 390 400 410 420
pF1KB4 KQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDE
:: : :.:.. .:::.:::::::.::: :
CCDS87 MGNIFGNLLKSLIGKK-EMRILMVGLDAAGKTTILYKLKLGE
10 20 30 40
430 440 450 460 470 480
pF1KB4 FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRIS
.. :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..
CCDS87 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN
50 60 70 80 90 100
490 500 510 520 530 540
pF1KB4 EAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDA
::. :: ..:.: :::::.::.::::::. .:... :::. :.::.: :.::::. :
CCDS87 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCA
110 120 130 140 150 160
550 560 570
pF1KB4 RSGMGLYEGLDWLSRQLVAAGVLDVA
:: :::::::::. ::
CCDS87 TSGDGLYEGLDWLANQLKNKK
170 180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 663 init1: 542 opt: 671 Z-score: 393.8 bits: 81.1 E(32554): 1.3e-15
Smith-Waterman score: 671; 59.1% identity (85.4% similar) in 164 aa overlap (402-565:15-177)
380 390 400 410 420 430
pF1KB4 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
: ..:.. .:::.:::::::.::: :..
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
10 20 30 40
440 450 460 470 480 490
pF1KB4 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
:::::::::::::::. ::.:::::. :.::::.::. :::...:::::. :.:..:.
CCDS34 TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA
50 60 70 80 90 100
500 510 520 530 540 550
pF1KB4 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
.:: :.: : :::::.::.::::::. .:. : :.:. :.:..: .:.::.:. : .:
CCDS34 DELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR-SRTWYVQATCATQG
110 120 130 140 150 160
560 570
pF1KB4 MGLYEGLDWLSRQLVAAGVLDVA
:::.::::::..:
CCDS34 TGLYDGLDWLSHELSKR
170 180
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 676 init1: 532 opt: 664 Z-score: 390.0 bits: 80.4 E(32554): 2.1e-15
Smith-Waterman score: 664; 59.1% identity (84.8% similar) in 164 aa overlap (402-565:15-177)
380 390 400 410 420 430
pF1KB4 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
: ..:.. .:::.:::::::.::: :..
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
10 20 30 40
440 450 460 470 480 490
pF1KB4 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
:::::::::::::::. ::.:::::. ..:::::::. :::...:::::. :.::.:.
CCDS28 TIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA
50 60 70 80 90 100
500 510 520 530 540 550
pF1KB4 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
.:: :.: :::::.::.::::::. .:... :.:. :.:..: .:.::.:. : .:
CCDS28 DELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLR-NRTWYVQATCATQG
110 120 130 140 150 160
560 570
pF1KB4 MGLYEGLDWLSRQLVAAGVLDVA
:::::::::: .:
CCDS28 TGLYEGLDWLSNELSKR
170 180
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 639 init1: 521 opt: 632 Z-score: 373.0 bits: 77.2 E(32554): 1.9e-14
Smith-Waterman score: 632; 57.2% identity (83.0% similar) in 159 aa overlap (404-562:13-170)
380 390 400 410 420 430
pF1KB4 FTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI
:.:.. ::::.:::::::.::: . . :
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI
10 20 30 40
440 450 460 470 480 490
pF1KB4 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSE
::.::::::: :::.::..:::::. :.::::.::: .::...:::: . ::::.::..:
CCDS96 PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE
50 60 70 80 90 100
500 510 520 530 540 550
pF1KB4 LAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMG
: ......:.:::..::::::::. :.. .:: : :.: .. :.::.: : :: :
CCDS96 LHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDG
110 120 130 140 150 160
560 570
pF1KB4 LYEGLDWLSRQLVAAGVLDVA
::::: ::.
CCDS96 LYEGLTWLTSNYKS
170
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 514 init1: 485 opt: 561 Z-score: 334.7 bits: 70.2 E(32554): 2.5e-12
Smith-Waterman score: 561; 53.1% identity (77.2% similar) in 162 aa overlap (404-565:17-177)
380 390 400 410 420 430
pF1KB4 FTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI
:.:.. ::::::::::::..:. : . :
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTI
10 20 30 40
440 450 460 470 480 490
pF1KB4 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSE
:::::::::: :::::: .::.::. ..:: :. :: ::.::..:::: ::::. ..::
CCDS44 PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE
50 60 70 80 90 100
500 510 520 530 540 550
pF1KB4 LAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMG
:. .: :.::: :.:..::::::. :.. :... :.: : :.: : .: .: :
CCDS44 LVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK-DRKWQIFKTSATKGTG
110 120 130 140 150 160
560 570
pF1KB4 LYEGLDWLSRQLVAAGVLDVA
: :...:: . :
CCDS44 LDEAMEWLVETLKSRQ
170 180
>>CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 (182 aa)
initn: 397 init1: 397 opt: 509 Z-score: 306.8 bits: 65.0 E(32554): 9.1e-11
Smith-Waterman score: 509; 41.9% identity (77.9% similar) in 172 aa overlap (396-567:9-179)
370 380 390 400 410 420
pF1KB4 TLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLK
... .: .:.:.. ::::.:::::.: .:
CCDS75 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLA
10 20 30
430 440 450 460 470 480
pF1KB4 QDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD
.... . :: :::...:. ...:...::.::..:.:: ::.:. ::. ...:.::. :
CCDS75 SEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRK
40 50 60 70 80 90
490 500 510 520 530 540
pF1KB4 RISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQG
:. :. .:::.:: :..: . .::::::::. : . ::.: :.:: . : : ::.
CCDS75 RFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DRVWQIQS
100 110 120 130 140 150
550 560 570
pF1KB4 CDARSGMGLYEGLDWLSRQLVAAGVLDVA
:.: .: :. .:..:. ... :
CCDS75 CSALTGEGVQDGMNWVCKNVNAKKK
160 170 180
574 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:25:35 2016 done: Thu Nov 3 15:25:36 2016
Total Scan time: 3.510 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]