Result of FASTA (ccds) for
pF1KB4708
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4708, 444 aa
1>>>pF1KB4708 444 - 444 aa - 444 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2639+/-0.000993; mu= 17.2422+/- 0.059
mean_var=57.5379+/-12.074, 0's: 0 Z-trim(103.2): 21 B-trim: 394 in 1/49
Lambda= 0.169082
statistics sampled from 7280 (7295) to 7280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.224), width: 16
Scan time: 2.710
The best scores are: opt bits E(32554)
CCDS8012.1 FADS2 gene_id:9415|Hs108|chr11 ( 444) 3118 769.1 0
CCDS60807.1 FADS2 gene_id:9415|Hs108|chr11 ( 422) 2641 652.8 1.9e-187
CCDS60808.1 FADS2 gene_id:9415|Hs108|chr11 ( 413) 2637 651.8 3.7e-187
CCDS8013.1 FADS3 gene_id:3995|Hs108|chr11 ( 445) 2051 508.9 4.2e-144
CCDS8011.2 FADS1 gene_id:3992|Hs108|chr11 ( 501) 1984 492.5 3.9e-139
>>CCDS8012.1 FADS2 gene_id:9415|Hs108|chr11 (444 aa)
initn: 3118 init1: 3118 opt: 3118 Z-score: 4107.2 bits: 769.1 E(32554): 0
Smith-Waterman score: 3118; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KB4 MGKGGNQGEGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGKGGNQGEGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 GHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 EDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 DYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNMLHVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNMLHVFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LGEWQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LGEWQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SYYIRFFITYIPFYGILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SYYIRFFITYIPFYGILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 TATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLL
370 380 390 400 410 420
430 440
pF1KB4 RALLDIIRSLKKSGKLWLDAYLHK
::::::::::::::::::::::::
CCDS80 RALLDIIRSLKKSGKLWLDAYLHK
430 440
>>CCDS60807.1 FADS2 gene_id:9415|Hs108|chr11 (422 aa)
initn: 2637 init1: 2637 opt: 2641 Z-score: 3478.7 bits: 652.8 E(32554): 1.9e-187
Smith-Waterman score: 2641; 96.7% identity (98.0% similar) in 393 aa overlap (53-444:35-422)
30 40 50 60 70 80
pF1KB4 WEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGH-YAGEDATDAFRAFHPDLEF
::.. :: .:.. ::::::::::::
CCDS60 EAGPFVCVCVLLASIPTPQTPLLQASLPPFHPASA---GHPITGQQ--DAFRAFHPDLEF
10 20 30 40 50
90 100 110 120 130 140
pF1KB4 VGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHII
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB4 ALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFV
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB4 IGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNMLHVFVLGEWQPIEYGKKKLKYLPYNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNMLHVFVLGEWQPIEYGKKKLKYLPYNH
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB4 QHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYGILGALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYGILGALL
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB4 FLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNF
300 310 320 330 340 350
390 400 410 420 430 440
pF1KB4 QIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGKLWLDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGKLWLDAY
360 370 380 390 400 410
pF1KB4 LHK
:::
CCDS60 LHK
420
>>CCDS60808.1 FADS2 gene_id:9415|Hs108|chr11 (413 aa)
initn: 2637 init1: 2637 opt: 2637 Z-score: 3473.6 bits: 651.8 E(32554): 3.7e-187
Smith-Waterman score: 2637; 100.0% identity (100.0% similar) in 375 aa overlap (70-444:39-413)
40 50 60 70 80 90
pF1KB4 DRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEP
::::::::::::::::::::::::::::::
CCDS60 RRVNSLMLYTLRSITSHRSSHPERWATSSQDAFRAFHPDLEFVGKFLKPLLIGELAPEEP
10 20 30 40 50 60
100 110 120 130 140 150
pF1KB4 SQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWI
70 80 90 100 110 120
160 170 180 190 200 210
pF1KB4 PTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQ
130 140 150 160 170 180
220 230 240 250 260 270
pF1KB4 HHAKPNIFHKDPDVNMLHVFVLGEWQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HHAKPNIFHKDPDVNMLHVFVLGEWQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYF
190 200 210 220 230 240
280 290 300 310 320 330
pF1KB4 QYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYGILGALLFLNFIRFLESHWFVWVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYGILGALLFLNFIRFLESHWFVWVTQ
250 260 270 280 290 300
340 350 360 370 380 390
pF1KB4 MNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKI
310 320 330 340 350 360
400 410 420 430 440
pF1KB4 APLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGKLWLDAYLHK
:::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGKLWLDAYLHK
370 380 390 400 410
>>CCDS8013.1 FADS3 gene_id:3995|Hs108|chr11 (445 aa)
initn: 2076 init1: 1064 opt: 2051 Z-score: 2700.5 bits: 508.9 E(32554): 4.2e-144
Smith-Waterman score: 2051; 62.6% identity (84.1% similar) in 446 aa overlap (1-444:1-445)
10 20 30 40 50
pF1KB4 MGKGGNQG--EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQR
:: :. : :: :. . .::: ::.:. :. :.::::.:.::.:..:. .::::.:
CCDS80 MGGVGEPGPREGPAQPGAPLPTFCWEQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRK
.:::...::::::::::: ::.:: :::.::::::::::::::: :....::::::..
CCDS80 LIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 TAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWL
.::::.:: .. .:: .::.::.:.: .::. .. .: ::.:. ..::.:: ::::. :
CCDS80 AAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 QHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNMLHV
::: :: :...: :::...:::.:.::: ::.::: ::::::::::::::::::.. :
CCDS80 QHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 FVLGEWQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAW
:.::: . .:::::: .:::::.:: :::::::::: . :. . . :.: .:.:: :
CCDS80 FLLGE-SSVEYGKKKRRYLPYNQQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWADLLW
250 260 270 280 290
300 310 320 330 340 350
pF1KB4 AVSYYIRFFITYIPFYGILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSS
:.:.: :::..:.::::. :.:::. .: ::::::::.:::::: :: .: .::: ::
CCDS80 AASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWVSS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB4 QLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKP
::.:::::: :.:..:::::::::::::::: ::::: ..::::::::::::. :. ::
CCDS80 QLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKP
360 370 380 390 400 410
420 430 440
pF1KB4 LLRALLDIIRSLKKSGKLWLDAYLHK
.: ::.::.::::::: .:::::::.
CCDS80 FLTALVDIVRSLKKSGDIWLDAYLHQ
420 430 440
>>CCDS8011.2 FADS1 gene_id:3992|Hs108|chr11 (501 aa)
initn: 2028 init1: 1030 opt: 1984 Z-score: 2611.4 bits: 492.5 E(32554): 3.9e-139
Smith-Waterman score: 1984; 63.4% identity (84.1% similar) in 440 aa overlap (11-444:64-501)
10 20 30
pF1KB4 MGKGGNQGEGAAEREVSVPT---FSWEEIQKHNLRTDRWL
::: .. :: :.:.:. ... .:::
CCDS80 WSPRTPSTRLTAPAGPARGVARPAMAPDPVAAETAAQGPTPRYFTWDEVAQRSGCEERWL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB4 VIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPE
:::::::::.... .::::.:::.::::.:::: : ::: . .: :... ::::::.::
CCDS80 VIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFHINKGLVKKYMNSLLIGELSPE
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB4 EPSQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNG
.:: . ::...:..:: :: :.: :.:.:.::::::: : ::. :.. ::.:.. ::..
CCDS80 QPSFEPTKNKELTDEFRELRATVERMGLMKANHVFFLLYLLHILLLDGAAWLTLWVFGTS
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB4 WIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRH
..: :. : .:.. ::::::::::.:::::. :::::.:.::::::::: :.:::: :
CCDS80 FLPFLLCAVLLSAVQAQAGWLQHDFGHLSVFSTSKWNHLLHHFVIGHLKGAPASWWNHMH
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB4 FQHHAKPNIFHKDPDVNMLH--VFVLGEWQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLI
:::::::: :.::::.:: : :.::. .: ::.: ::.::::::.:::::::: :.
CCDS80 FQHHAKPNCFRKDPDINM-HPFFFALGKILSVELGKQKKKYMPYNHQHKYFFLIGPPALL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB4 PMYFQYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYGILGALLFLNFI-RFLESHWF
:.:::. :.. .: .:.:::::: ...:.:::.::.:. : : :.: : :: :::::.::
CCDS80 PLYFQWYIFYFVIQRKKWVDLAWMITFYVRFFLTYVPLLG-LKAFLGLFFIVRFLESNWF
340 350 360 370 380 390
340 350 360 370 380 390
pF1KB4 VWVTQMNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRH
::::::::: :.::.. :: :.:: :::::..: ::::::::::::::::::::::::
CCDS80 VWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPTMPRH
400 410 420 430 440 450
400 410 420 430 440
pF1KB4 NLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGKLWLDAYLHK
: ::.::::.::::::::::: :::: :. :::.:::.::.::::::::.
CCDS80 NYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLKESGQLWLDAYLHQ
460 470 480 490 500
444 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:01:40 2016 done: Sat Nov 5 06:01:41 2016
Total Scan time: 2.710 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]