Result of FASTA (ccds) for
pF1KB4737
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4737, 1366 aa
1>>>pF1KB4737 1366 - 1366 aa - 1366 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.3293+/-0.00148; mu= 3.5169+/- 0.090
mean_var=670.3646+/-136.785, 0's: 0 Z-trim(113.5): 243 B-trim: 0 in 0/53
Lambda= 0.049536
statistics sampled from 13874 (14098) to 13874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.433), width: 16
Scan time: 6.460
The best scores are: opt bits E(32554)
CCDS34682.1 COL1A2 gene_id:1278|Hs108|chr7 (1366) 9990 730.7 6.6e-210
CCDS11561.1 COL1A1 gene_id:1277|Hs108|chr17 (1464) 5741 427.1 1.8e-118
CCDS8759.1 COL2A1 gene_id:1280|Hs108|chr12 (1418) 5238 391.1 1.1e-107
CCDS41778.1 COL2A1 gene_id:1280|Hs108|chr12 (1487) 5238 391.2 1.2e-107
CCDS33350.1 COL5A2 gene_id:1290|Hs108|chr2 (1499) 4602 345.7 5.7e-94
CCDS2297.1 COL3A1 gene_id:1281|Hs108|chr2 (1466) 4344 327.3 2e-88
CCDS12222.1 COL5A3 gene_id:50509|Hs108|chr19 (1745) 3869 293.4 3.6e-78
CCDS780.2 COL11A1 gene_id:1301|Hs108|chr1 (1690) 3662 278.6 1e-73
CCDS53348.1 COL11A1 gene_id:1301|Hs108|chr1 (1767) 3662 278.6 1e-73
CCDS778.1 COL11A1 gene_id:1301|Hs108|chr1 (1806) 3662 278.7 1e-73
CCDS6982.1 COL5A1 gene_id:1289|Hs108|chr9 (1838) 3510 267.8 2e-70
CCDS75932.1 COL5A1 gene_id:1289|Hs108|chr9 (1838) 3497 266.9 3.8e-70
CCDS43452.1 COL11A2 gene_id:1302|Hs108|chr6 (1650) 3316 253.9 2.8e-66
CCDS41353.1 COL24A1 gene_id:255631|Hs108|chr1 (1714) 3054 235.2 1.2e-60
CCDS6802.1 COL27A1 gene_id:85301|Hs108|chr9 (1860) 2933 226.6 5.1e-58
CCDS9511.1 COL4A1 gene_id:1282|Hs108|chr13 (1669) 2851 220.6 2.8e-56
CCDS42829.1 COL4A3 gene_id:1285|Hs108|chr2 (1670) 2820 218.4 1.3e-55
CCDS41297.1 COL16A1 gene_id:1307|Hs108|chr1 (1604) 2652 206.4 5.3e-52
CCDS76008.1 COL4A6 gene_id:1288|Hs108|chrX (1633) 2447 191.8 1.4e-47
CCDS76009.1 COL4A6 gene_id:1288|Hs108|chrX (1666) 2447 191.8 1.4e-47
CCDS14542.1 COL4A6 gene_id:1288|Hs108|chrX (1690) 2447 191.8 1.4e-47
CCDS14541.1 COL4A6 gene_id:1288|Hs108|chrX (1691) 2447 191.8 1.4e-47
CCDS6376.1 COL22A1 gene_id:169044|Hs108|chr8 (1626) 2414 189.4 7e-47
CCDS2773.1 COL7A1 gene_id:1294|Hs108|chr3 (2944) 2344 184.8 3.1e-45
CCDS42828.1 COL4A4 gene_id:1286|Hs108|chr2 (1690) 2201 174.2 2.7e-42
CCDS14543.1 COL4A5 gene_id:1287|Hs108|chrX (1685) 1988 159.0 1e-37
CCDS35366.1 COL4A5 gene_id:1287|Hs108|chrX (1691) 1988 159.0 1e-37
CCDS4970.1 COL19A1 gene_id:1310|Hs108|chr6 (1142) 1929 154.5 1.6e-36
CCDS13505.1 COL9A3 gene_id:1299|Hs108|chr20 ( 684) 1810 145.7 4.2e-34
CCDS450.1 COL9A2 gene_id:1298|Hs108|chr1 ( 689) 1750 141.4 8.3e-33
CCDS47447.1 COL9A1 gene_id:1297|Hs108|chr6 ( 678) 1739 140.6 1.4e-32
CCDS4971.1 COL9A1 gene_id:1297|Hs108|chr6 ( 921) 1734 140.4 2.2e-32
CCDS42971.1 COL18A1 gene_id:80781|Hs108|chr21 (1339) 1725 140.0 4.2e-32
CCDS42972.1 COL18A1 gene_id:80781|Hs108|chr21 (1519) 1725 140.1 4.5e-32
CCDS77643.1 COL18A1 gene_id:80781|Hs108|chr21 (1754) 1725 140.2 4.8e-32
CCDS43553.1 COL28A1 gene_id:340267|Hs108|chr7 (1125) 1456 120.7 2.3e-26
CCDS58922.1 COL25A1 gene_id:84570|Hs108|chr4 ( 645) 1390 115.6 4.4e-25
CCDS7554.1 COL17A1 gene_id:1308|Hs108|chr10 (1497) 1378 115.3 1.3e-24
CCDS83099.1 COL21A1 gene_id:81578|Hs108|chr6 ( 954) 1272 107.5 1.9e-22
CCDS55025.1 COL21A1 gene_id:81578|Hs108|chr6 ( 957) 1272 107.5 1.9e-22
CCDS41907.1 COL4A2 gene_id:1284|Hs108|chr13 (1712) 1202 102.8 8.5e-21
CCDS44419.1 COL13A1 gene_id:1305|Hs108|chr10 ( 717) 1182 100.8 1.4e-20
CCDS76010.1 COL4A6 gene_id:1288|Hs108|chrX (1707) 1189 101.9 1.6e-20
CCDS44427.2 COL13A1 gene_id:1305|Hs108|chr10 ( 645) 1175 100.3 1.9e-20
CCDS44424.2 COL13A1 gene_id:1305|Hs108|chr10 ( 695) 1175 100.3 2e-20
CCDS44425.2 COL13A1 gene_id:1305|Hs108|chr10 ( 686) 1162 99.4 3.7e-20
CCDS35081.1 COL15A1 gene_id:1306|Hs108|chr9 (1388) 1166 100.1 4.5e-20
CCDS4436.1 COL23A1 gene_id:91522|Hs108|chr5 ( 540) 1141 97.7 9.1e-20
CCDS44423.2 COL13A1 gene_id:1305|Hs108|chr10 ( 668) 1078 93.4 2.3e-18
CCDS76649.1 COL4A1 gene_id:1282|Hs108|chr13 ( 519) 1071 92.7 2.9e-18
>>CCDS34682.1 COL1A2 gene_id:1278|Hs108|chr7 (1366 aa)
initn: 9990 init1: 9990 opt: 9990 Z-score: 3882.0 bits: 730.7 E(32554): 6.6e-210
Smith-Waterman score: 9990; 99.9% identity (99.9% similar) in 1366 aa overlap (1-1366:1-1366)
10 20 30 40 50 60
pF1KB4 MLSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 GANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 GSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 GPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 GGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAA
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 GPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB4 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB4 GFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB4 GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB4 GAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB4 GLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIR
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB4 GPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB4 SLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB4 ETCIRAQPENIPAKNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ETCIRAQPENIPAKNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB4 ANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360
pF1KB4 TNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
1330 1340 1350 1360
>>CCDS11561.1 COL1A1 gene_id:1277|Hs108|chr17 (1464 aa)
initn: 11451 init1: 5207 opt: 5741 Z-score: 2240.6 bits: 427.1 E(32554): 1.8e-118
Smith-Waterman score: 6478; 64.3% identity (77.3% similar) in 1363 aa overlap (26-1365:105-1463)
10 20 30 40 50
pF1KB4 MLSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDG-
:: : .:: :: :::: ::: :::::::
CCDS11 CDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGI
80 90 100 110 120 130
60 70 80 90 100
pF1KB4 --EDGPTGPPGPPGPPGPPGLGGNFAAQ----YDGKGVGLG---PGPMGLMGPRGPPGAA
. : ::::::::::::::::::: : :: :..: : ::::: :::: ::
CCDS11 PGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTG-GISVPGPMGPSGPRGLPGPP
140 150 160 170 180 190
110 120 130 140 150 160
pF1KB4 GAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGAR
::::::::::: ::::::: .:: : ::: ::::: :.::. :::::::::: ::::::
CCDS11 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR
200 210 220 230 240 250
170 180 190 200 210 220
pF1KB4 GFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRV
:.::: ::::.:: :: .:::: ::. : : :::::.:::::.::: : :::::::::
CCDS11 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP
260 270 280 290 300 310
230 240 250 260 270 280
pF1KB4 GAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEV
::::::::::.::..: .:: :: : ::::::::: : ::: : : : :: : :::
CCDS11 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP
320 330 340 350 360 370
290 300 310 320 330 340
pF1KB4 GLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLV
: :: .: .:: :::::.: ::::: : ::.:::::.:: :: :: : .: : .:
CCDS11 GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNS
380 390 400 410 420 430
350 360 370 380 390 400
pF1KB4 GEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSR
:::: ::::..: ::::: .: ::::::.::::::: :: : .: ::::: ::.::::
CCDS11 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR
440 450 460 470 480 490
410 420 430 440 450 460
pF1KB4 GLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKE
:.::::: :: :: : ::. :::: .: :.:::::: :: : .:: ::::. :: ::
CCDS11 GFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT
500 510 520 530 540 550
470 480 490 500 510 520
pF1KB4 GPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPD
:: : : :::::: :: ::::. : .::::::: .:.::: :..: : :: : : :
CCDS11 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD
560 570 580 590 600 610
530 540 550 560 570 580
pF1KB4 GNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPA
:. :::::::: : : .::::::: :::::::::.:: ::.:::::.:. :..: :::.
CCDS11 GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPS
620 630 640 650 660 670
590 600 610 620 630 640
pF1KB4 GPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGER
: ::::: ::: :. :: :: : :: .: :: :: ::. :. :: :. : : .:.::::
CCDS11 GARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGER
680 690 700 710 720 730
650 660 670 680 690 700
pF1KB4 GAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPA
::::.:: ::..:. : .: :.::.::.:: : .: :::::: ::.::.: .:::::.
CCDS11 GAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPT
740 750 760 770 780 790
710 720 730 740 750 760
pF1KB4 GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPA
: ::.::.::: :: :: ::::: :: :::::::: : : ::. : ::.::.: ::
CCDS11 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI
800 810 820 830 840 850
770 780 790 800 810 820
pF1KB4 GPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQ
: : :: :.::..:::: :::::::::.::::::: .::::::::::::: .::::.
CCDS11 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET
860 870 880 890 900 910
830 840 850 860 870 880
pF1KB4 GPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLP
::.:: :::: :::: ::::: : : :: ::::::::. : :..::::.:::::.:
CCDS11 GPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP
920 930 940 950 960 970
890 900 910 920 930 940
pF1KB4 GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHK
:. : :::: : .: : ::::: .: ::. : :::.::.: :: .: :::::.:: :
CCDS11 GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAK
980 990 1000 1010 1020 1030
950 960 970 980 990 1000
pF1KB4 GERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIR
:.:: : :: :: :::: :::::::: :.::::::.::.::.: :: :::.:::: :
CCDS11 GDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR
1040 1050 1060 1070 1080 1090
1010 1020 1030 1040 1050 1060
pF1KB4 GDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKD
::::: ::.: ::. : .: .:::: :: : :.:: :. :::::::: : .: :::
CCDS11 GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKD
1100 1110 1120 1130 1140 1150
1070 1080 1090 1100 1110
pF1KB4 GRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGY----------DGD
: .: :: .:: : :: : ::.::::::::::::: ..:.::.. ::
CCDS11 GLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG
1160 1170 1180 1190 1200 1210
1120 1130 1140 1150 1160 1170
pF1KB4 -FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWS
.:::: .: .: .: :::.:::::..:::.. .:::::::::::::::.. : .:.
CCDS11 RYYRAD---DANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWK
1220 1230 1240 1250 1260 1270
1180 1190 1200 1210 1220 1230
pF1KB4 SGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWY--RSSKDKKHVWLGETI
:: :::::::::..:::::.:.. :::::. .. :::: .. :::.:::.::..
CCDS11 SGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESM
1280 1290 1300 1310 1320 1330
1240 1250 1260 1270 1280 1290
pF1KB4 NAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVIL
. : ::::. .: ..: ::.:.::... ::::::::::::.::::..:::::::..:
CCDS11 TDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLL
1340 1350 1360 1370 1380 1390
1300 1310 1320 1330 1340 1350
pF1KB4 QGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGA
::::..:. :::::::::.: ::::...:. ::::.:::::.: ::::..:.::::.:.
CCDS11 QGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAP
1400 1410 1420 1430 1440 1450
1360
pF1KB4 DQEFFVDIGPVCFK
:::: :.:::::
CCDS11 DQEFGFDVGPVCFL
1460
>>CCDS8759.1 COL2A1 gene_id:1280|Hs108|chr12 (1418 aa)
initn: 5023 init1: 5023 opt: 5238 Z-score: 2046.5 bits: 391.1 E(32554): 1.1e-107
Smith-Waterman score: 6447; 64.9% identity (77.3% similar) in 1358 aa overlap (32-1365:62-1417)
10 20 30 40 50
pF1KB4 LSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDG-P--
.:: :::: .::.: ::: ::::: : :
CCDS87 GPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB4 TGPPGPPGPPGPPGLGGNFAAQ----YDGK--GVGLG--PGPMGLMGPRGPPGAAGAPGP
::::::::::::::::::::: .: : :. :: :::: :::::::: ::::::
CCDS87 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB4 QGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGT
::::: ::::::: .:: : ::: ::::: :.::. ::::. :::: :::::::::::
CCDS87 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB4 PGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGP
::::: :: ::. :::: ::. :::::::: :.:::::.:: : :::::::::.: :
CCDS87 PGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGA
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB4 AGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGL
:::::.::. ::.:: ::.: :: :::::::: ::: : .: :: : ::::: : ::
CCDS87 AGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGS
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB4 SGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGP
::.: ::::..:. ::::.:: ::.:::::.::::: ::: ::.: : .: .::::
CCDS87 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI
340 350 360 370 380 390
360 370 380 390 400 410
pF1KB4 AGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGA
:: :::.: ::::: ::::: :::.::::::: :: :..:: :::: ::.::.::.::
CCDS87 AGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQ
400 410 420 430 440 450
420 430 440 450 460 470
pF1KB4 DGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGL
:: :: : :: :: :: :: .: ::: :::::::: : ::: : ::. :: :: :: :
CCDS87 DGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGA
460 470 480 490 500 510
480 490 500 510 520 530
pF1KB4 PGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGA
:: :::::: :: ::::.:: .::::::: .:.::: :.:: : : :: :: ::..::
CCDS87 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA
520 530 540 550 560 570
540 550 560 570 580 590
pF1KB4 QGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGE
::::: : : .:::: :: :::::::: :: :: ::::..:. :: : :: .:::::
CCDS87 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE
580 590 600 610 620 630
600 610 620 630 640 650
pF1KB4 RGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGI
:: ::: :. : : : :: : :: :: :: : .: :. :: : .:.:::::::::
CCDS87 RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGI
640 650 660 670 680 690
660 670 680 690 700 710
pF1KB4 PGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGS
: ::..:. : .: : ::.::.:: : .: ::::::.:..::.: :::: :: ::.
CCDS87 AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGA
700 710 720 730 740 750
720 730 740 750 760 770
pF1KB4 PGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGP
::::::.:: :: ::::: :: ::::::::.: : ::. :. :: :: :: :: ::.:
CCDS87 PGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV
760 770 780 790 800 810
780 790 800 810 820 830
pF1KB4 PGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGR
:: :.:: :::: :::::::::.:::: .: ::::::::.::.: .: :::.:: ::
CCDS87 TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR
820 830 840 850 860 870
840 850 860 870 880 890
pF1KB4 TGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGA
.:: : :: : :::: :. : .: : :::::: : ::.::::.:::::.::. :
CCDS87 AGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP
880 890 900 910 920 930
900 910 920 930 940 950
pF1KB4 VGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY
:::: : : : ::::: :: ::..: :: ::.:.:: :::::::: : ::.::
CCDS87 SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGE
940 950 960 970 980 990
960 970 980 990 1000 1010
pF1KB4 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGE
: .: :: : :: ::.::.::.:.:::.: .::.::.: .: :: .:::: ::::::
CCDS87 TGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGE
1000 1010 1020 1030 1040 1050
1020 1030 1040 1050 1060 1070
pF1KB4 PGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGH
:: : ::: : .: .::::::: : ::::: : .::.::::: :: ::.:::: .:
CCDS87 AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI
1060 1070 1080 1090 1100 1110
1080 1090 1100 1110
pF1KB4 PGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDF-----------GYDG-DFYR
:: .:: : :: .:. ::::::: :::::::: : : :. : : ...:
CCDS87 PGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMR
1120 1130 1140 1150 1160 1170
1120 1130 1140 1150 1160 1170
pF1KB4 ADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYY
::: .: .:: .: ::::::::::::::.. .:::::::::::::::.: ::::.:: :
CCDS87 ADQ--AAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDY
1180 1190 1200 1210 1220
1180 1190 1200 1210 1220 1230
pF1KB4 WIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRS-SKDKKHVWLGETINAGSQ
:::::::::.::.::.:.. :::::. .: :.: :::. : ::.:::.:.:::::.: .
CCDS87 WIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFH
1230 1240 1250 1260 1270 1280
1240 1250 1260 1270 1280 1290
pF1KB4 FEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSND
: :. .... . .:..:.:::.. .::::::::::::::.:: .::::::...:::::
CCDS87 FSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSND
1290 1300 1310 1320 1330 1340
1300 1310 1320 1330 1340 1350
pF1KB4 VELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFF
::. ::::::::::.: :::.:.:..::::.:::...: ::::..::::.:::: .:::
CCDS87 VEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFG
1350 1360 1370 1380 1390 1400
1360
pF1KB4 VDIGPVCFK
::::::::
CCDS87 VDIGPVCFL
1410
>>CCDS41778.1 COL2A1 gene_id:1280|Hs108|chr12 (1487 aa)
initn: 5023 init1: 5023 opt: 5238 Z-score: 2046.3 bits: 391.2 E(32554): 1.2e-107
Smith-Waterman score: 6447; 64.9% identity (77.3% similar) in 1358 aa overlap (32-1365:131-1486)
10 20 30 40 50
pF1KB4 LSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDG-P--
.:: :::: .::.: ::: ::::: : :
CCDS41 GPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN
110 120 130 140 150 160
60 70 80 90 100 110
pF1KB4 TGPPGPPGPPGPPGLGGNFAAQ----YDGK--GVGLG--PGPMGLMGPRGPPGAAGAPGP
::::::::::::::::::::: .: : :. :: :::: :::::::: ::::::
CCDS41 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP
170 180 190 200 210 220
120 130 140 150 160 170
pF1KB4 QGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGT
::::: ::::::: .:: : ::: ::::: :.::. ::::. :::: :::::::::::
CCDS41 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT
230 240 250 260 270 280
180 190 200 210 220 230
pF1KB4 PGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGP
::::: :: ::. :::: ::. :::::::: :.:::::.:: : :::::::::.: :
CCDS41 PGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGA
290 300 310 320 330 340
240 250 260 270 280 290
pF1KB4 AGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGL
:::::.::. ::.:: ::.: :: :::::::: ::: : .: :: : ::::: : ::
CCDS41 AGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGS
350 360 370 380 390 400
300 310 320 330 340 350
pF1KB4 SGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGP
::.: ::::..:. ::::.:: ::.:::::.::::: ::: ::.: : .: .::::
CCDS41 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI
410 420 430 440 450 460
360 370 380 390 400 410
pF1KB4 AGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGA
:: :::.: ::::: ::::: :::.::::::: :: :..:: :::: ::.::.::.::
CCDS41 AGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQ
470 480 490 500 510 520
420 430 440 450 460 470
pF1KB4 DGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGL
:: :: : :: :: :: :: .: ::: :::::::: : ::: : ::. :: :: :: :
CCDS41 DGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGA
530 540 550 560 570 580
480 490 500 510 520 530
pF1KB4 PGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGA
:: :::::: :: ::::.:: .::::::: .:.::: :.:: : : :: :: ::..::
CCDS41 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA
590 600 610 620 630 640
540 550 560 570 580 590
pF1KB4 QGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGE
::::: : : .:::: :: :::::::: :: :: ::::..:. :: : :: .:::::
CCDS41 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE
650 660 670 680 690 700
600 610 620 630 640 650
pF1KB4 RGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGI
:: ::: :. : : : :: : :: :: :: : .: :. :: : .:.:::::::::
CCDS41 RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGI
710 720 730 740 750 760
660 670 680 690 700 710
pF1KB4 PGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGS
: ::..:. : .: : ::.::.:: : .: ::::::.:..::.: :::: :: ::.
CCDS41 AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGA
770 780 790 800 810 820
720 730 740 750 760 770
pF1KB4 PGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGP
::::::.:: :: ::::: :: ::::::::.: : ::. :. :: :: :: :: ::.:
CCDS41 PGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV
830 840 850 860 870 880
780 790 800 810 820 830
pF1KB4 PGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGR
:: :.:: :::: :::::::::.:::: .: ::::::::.::.: .: :::.:: ::
CCDS41 TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR
890 900 910 920 930 940
840 850 860 870 880 890
pF1KB4 TGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGA
.:: : :: : :::: :. : .: : :::::: : ::.::::.:::::.::. :
CCDS41 AGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP
950 960 970 980 990 1000
900 910 920 930 940 950
pF1KB4 VGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY
:::: : : : ::::: :: ::..: :: ::.:.:: :::::::: : ::.::
CCDS41 SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGE
1010 1020 1030 1040 1050 1060
960 970 980 990 1000 1010
pF1KB4 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGE
: .: :: : :: ::.::.::.:.:::.: .::.::.: .: :: .:::: ::::::
CCDS41 TGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGE
1070 1080 1090 1100 1110 1120
1020 1030 1040 1050 1060 1070
pF1KB4 PGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGH
:: : ::: : .: .::::::: : ::::: : .::.::::: :: ::.:::: .:
CCDS41 AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI
1130 1140 1150 1160 1170 1180
1080 1090 1100 1110
pF1KB4 PGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDF-----------GYDG-DFYR
:: .:: : :: .:. ::::::: :::::::: : : :. : : ...:
CCDS41 PGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMR
1190 1200 1210 1220 1230 1240
1120 1130 1140 1150 1160 1170
pF1KB4 ADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYY
::: .: .:: .: ::::::::::::::.. .:::::::::::::::.: ::::.:: :
CCDS41 ADQ--AAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDY
1250 1260 1270 1280 1290
1180 1190 1200 1210 1220 1230
pF1KB4 WIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRS-SKDKKHVWLGETINAGSQ
:::::::::.::.::.:.. :::::. .: :.: :::. : ::.:::.:.:::::.: .
CCDS41 WIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFH
1300 1310 1320 1330 1340 1350
1240 1250 1260 1270 1280 1290
pF1KB4 FEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSND
: :. .... . .:..:.:::.. .::::::::::::::.:: .::::::...:::::
CCDS41 FSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSND
1360 1370 1380 1390 1400 1410
1300 1310 1320 1330 1340 1350
pF1KB4 VELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFF
::. ::::::::::.: :::.:.:..::::.:::...: ::::..::::.:::: .:::
CCDS41 VEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFG
1420 1430 1440 1450 1460 1470
1360
pF1KB4 VDIGPVCFK
::::::::
CCDS41 VDIGPVCFL
1480
>>CCDS33350.1 COL5A2 gene_id:1290|Hs108|chr2 (1499 aa)
initn: 8339 init1: 4432 opt: 4602 Z-score: 1800.6 bits: 345.7 E(32554): 5.7e-94
Smith-Waterman score: 5533; 56.9% identity (70.7% similar) in 1363 aa overlap (32-1365:140-1498)
10 20 30 40 50 60
pF1KB4 LSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGP
.:: :.:::.:. :: :: : ::: : :
CCDS33 GRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQ
110 120 130 140 150 160
70 80 90 100
pF1KB4 PGPPGPPG------PPGLGGNFAAQYDG----KG----VGLGPGPMGLMGPRGPPGAAGA
:: ::::: : ::. :.::. : .: ::: :: .: .::::: : :
CCDS33 PGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQ
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB4 PGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGF
: : :: ::::.:: :: :.::: ::::: ::::.::. : ::: : .: :::::
CCDS33 QGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGF
230 240 250 260 270 280
170 180 190 200 210 220
pF1KB4 PGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGA
::.:::::.:: :::.::.: ::. :::: ::: : : :. : : ::.::::::.:
CCDS33 PGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGP
290 300 310 320 330 340
230 240 250 260 270 280
pF1KB4 PGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGL
: : ::. : : :: ::.: : :::: :: ::: : .: :: :: : :::.:
CCDS33 QGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGP
350 360 370 380 390 400
290 300 310 320 330 340
pF1KB4 PGLSGPVGPPGNPGA---NGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGL
:: ::: :: ::: .: :::: .: ::..: :: :: : ::: :..: : ::
CCDS33 PG---PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQ
410 420 430 440 450 460
350 360 370 380 390 400
pF1KB4 VGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGS
:.:: : :::.: ::::: : ::: :: :::::::: :. :..::::: : ::.::.
CCDS33 PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGN
470 480 490 500 510 520
410 420 430 440 450 460
pF1KB4 RGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGK
::.::.:: : : : :: : .: .: .:: :::::::: : ::: :.:: :: ::
CCDS33 RGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGK
530 540 550 560 570 580
470 480 490 500 510 520
pF1KB4 EGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP
::.: :: :::::: : : ::.::..:.::::: .::::: :. :.::. : :::::
CCDS33 LGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGK
590 600 610 620 630 640
530 540 550 560 570 580
pF1KB4 DGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGP
::. : .:: :: :. : .::::: :: :::::::: :: :: ::::..:. :. : ::
CCDS33 DGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGP
650 660 670 680 690 700
590 600 610 620 630 640
pF1KB4 AGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGE
::::::: ::: : : :: : .: .: :::: :: :: :. : .:: : .:.:::
CCDS33 LGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGE
710 720 730 740 750 760
650 660 670 680 690 700
pF1KB4 RGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGP
:: :: :: ::..: : .: :. : ::::: :: .: ::::: ::..:: : : .::
CCDS33 RGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGP
770 780 790 800 810 820
710 720 730 740 750 760
pF1KB4 AGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGP
: ::.:: ::: ::.: ::::: : ::::.::: : : ::. : :: : .:. ::
CCDS33 PGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP
830 840 850 860 870 880
770 780 790 800 810 820
pF1KB4 AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGD
:::: :: :.:: :::: :::::.:::.:::::.: :: :: : :::: : :::
CCDS33 HGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGD
890 900 910 920 930 940
830 840 850 860 870 880
pF1KB4 QGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGL
: ::.:. : .:::: :.:: :: : :: : ::: : : ::.:.::.:::::.
CCDS33 PGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGM
950 960 970 980 990 1000
890 900 910 920 930 940
pF1KB4 PGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGH
::. : .: :: .: .: : .:::: :: :: :: :: : .: :::: ::::: :.
CCDS33 PGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGE
1010 1020 1030 1040 1050 1060
950 960 970 980 990 1000
pF1KB4 KGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGI
.:.:: :: : :. :::: :::: : :.::. : ::.:: : .: :: ::::
CCDS33 RGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGP
1070 1080 1090 1100 1110 1120
1010 1020 1030 1040 1050 1060
pF1KB4 RGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGK
:::::. :..: :: : .: .::::::: : .:.::. : :: ::::: :: ::.::
CCDS33 RGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGK
1130 1140 1150 1160 1170 1180
1070 1080 1090 1100 1110
pF1KB4 DGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSG----------GGYDFGYDG
.: : : .:: :.:: :. :: :::: :::::::: : : :: ..
CCDS33 EGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPD
1190 1200 1210 1220 1230 1240
1120 1130 1140 1150 1160 1170
pF1KB4 DFYRADQPRSAPSLRPK-DYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEW
. . . ..::. . : : : ::::::..::::. .:.::.:.::::: ::.: :
CCDS33 PLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAK
1250 1260 1270 1280 1290 1300
1180 1190 1200 1210 1220 1230
pF1KB4 SSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRS-SKDKKHVWLGETI
.:: :::::::: . :::::::.. :::::: :.: ..: :.:. : : :.: :: : .
CCDS33 QSGEYWIDPNQGSVEDAIKVYCNMETGETCISANPSSVPRKTWWASKSPDNKPVWYGLDM
1310 1320 1330 1340 1350 1360
1240 1250 1260 1270 1280 1290
pF1KB4 NAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVIL
: :::: :. . . . ::..:.:::.. ::::::: ::::..:::... ::::::.:
CCDS33 NRGSQFAYG-DHQSPNTAITQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVL
1370 1380 1390 1400 1410 1420
1300 1310 1320 1330 1340 1350
pF1KB4 QGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGA
.:.::... :::: :: : :: : :::.... :::..::.:.. .:::..:.::.:.::.
CCDS33 KGANDLDIKAEGNIRFRYIVLQDTCSKRNGNVGKTVFEYRTQNVARLPIIDLAPVDVGGT
1430 1440 1450 1460 1470 1480
1360
pF1KB4 DQEFFVDIGPVCFK
:::: :.::::::
CCDS33 DQEFGVEIGPVCFV
1490
>>CCDS2297.1 COL3A1 gene_id:1281|Hs108|chr2 (1466 aa)
initn: 7054 init1: 4214 opt: 4344 Z-score: 1701.0 bits: 327.3 E(32554): 2e-88
Smith-Waterman score: 5477; 56.3% identity (70.0% similar) in 1388 aa overlap (18-1365:84-1465)
10 20 30 40
pF1KB4 MLSFVDTRTLLLLAVTLCLATCQSLQEETVRK-GPAGDRGPRGERGP
: :.: . .: . : .::.:. ::
CCDS22 VCDSGSVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGP
60 70 80 90 100 110
50 60 70 80 90
pF1KB4 PGPPGRDGEDGPTGPPGPPGPPGPPGL-----GG--NFAAQYDG----KGVGLG-----P
:: :::.:. : : :: :: :::::. : :.. :::. .::..: :
CCDS22 PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP
120 130 140 150 160 170
100 110 120 130 140
pF1KB4 GPMGLMGPRGPPGAAG---APGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHP
:: : :: ::::..: .:: :.::: ::::. : .:: : : :: : ::.::.
CCDS22 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES
180 190 200 210 220 230
150 160 170 180 190 200
pF1KB4 GKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGEN
:.::::::::. :: : .: : ::.::.:: :: .: .: ::. ::::.::: : ::::
CCDS22 GRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGEN
240 250 260 270 280 290
210 220 230 240 250 260
pF1KB4 GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEI
:.:: : :: :::::: : :: :::::.::. : : :: : : ::::.:: :::.
CCDS22 GAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV
300 310 320 330 340 350
270 280 290 300 310 320
pF1KB4 GAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPR
: .:. : : : ::: : : .: :::: :: :: :.:: : :. ::::: : :
CCDS22 GPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGAR
360 370 380 390 400 410
330 340 350 360 370 380
pF1KB4 GIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEA
: :::.:: :: : :: .:::: :.::: : .:: : :: : :: .::.:: : ::
CCDS22 GPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEP
420 430 440 450 460 470
390 400 410 420 430 440
pF1KB4 GSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLM
:. : :: : ::.:: :: : .: : :: : ::: :::: :: :. :: : ::
CCDS22 GANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP
480 490 500 510 520 530
450 460 470 480 490 500
pF1KB4 GPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKN
: ::.:::::. : :: :: : : .::::: ::.: ::.:: .::::::: : ::::
CCDS22 GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKN
540 550 560 570 580 590
510 520 530 540 550 560
pF1KB4 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEV
:..: : : .: :: .:..: :::::: : : ::. :: :: :.::::: .:: ::
CCDS22 GERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGEN
600 610 620 630 640 650
570 580 590 600 610 620
pF1KB4 GKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVV
::::: : .:. : :: : .:. : ::: : : .: : :: .:::::.:.:: :
CCDS22 GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP
660 670 680 690 700 710
630 640 650 660 670 680
pF1KB4 GAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPA
: :.:: : .:.:::::. : :: ::.::::: : : ::.:: :: : .: ::::
CCDS22 GPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPA
720 730 740 750 760 770
690 700 710 720 730 740
pF1KB4 GATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPK
: ::.::.:: : : ::::::::::::.:: :: :: : : :.::.:::::: : :
CCDS22 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK
780 790 800 810 820 830
750 760 770 780 790 800
pF1KB4 GENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPP
::.: : .:: :..::::: :: : : ::. : :: .::::: : :::: .: :
CCDS22 GEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG---NP
840 850 860 870 880 890
810 820 830 840 850 860
pF1KB4 GPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGP---Q
:::::.:. : :: : : .: : :. :: : ::. : .: :. ::::.:::
CCDS22 GPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIA
900 910 920 930 940 950
870 880 890 900 910 920
pF1KB4 GLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEA
:. :: :. : :: : :: :: :. :: : : : : ::::: : ::. :. ::
CCDS22 GITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEP
960 970 980 990 1000 1010
930 940 950 960 970 980
pF1KB4 GRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPS
:::::::.:: :::::.:: ::.:: :. : :: : ::: :::::::: :.:::.::.
CCDS22 GRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPA
1020 1030 1040 1050 1060 1070
990 1000 1010 1020 1030 1040
pF1KB4 GPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAP
::.: : .: :: :::: :::::: ::.: :. : .: : : :: : :.:::
CCDS22 GPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAI
1080 1090 1100 1110 1120 1130
1050 1060 1070 1080 1090 1100
pF1KB4 GSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPG-P--PGPPGPP
:: ::::::::.::::: :::: .:::: .:: : :: .:..: : :: : :::::::
CCDS22 GSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPP
1140 1150 1160 1170 1180 1190
1110 1120 1130 1140
pF1KB4 GVSG---GGYD------FGYD--GDF--YRADQPRSAPSLRPKDYEVDATLKSLNNQIET
:. : :: .: . : : : .:.: . .. . :. ..:::.:.:::.
CCDS22 GAPGPCCGGVGAAAIAGIGGEKAGGFAPYYGDEPMD---FKINTDEIMTSLKSVNGQIES
1200 1210 1220 1230 1240
1150 1160 1170 1180 1190 1200
pF1KB4 LLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQP
:..:.::::::::.::::.. ::: .:: ::.:::::: .:::::.:.. :::::: :.:
CCDS22 LISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCISANP
1250 1260 1270 1280 1290 1300
1210 1220 1230 1240 1250 1260
pF1KB4 ENIPAKNWYR-SSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQN
:.: :.:. :: .:::::.::....: :: :. . . ..:::.:::.. ::::
CCDS22 LNVPRKHWWTDSSAEKKHVWFGESMDGGFQFSYGNPELPEDVLDVHLAFLRLLSSRASQN
1310 1320 1330 1340 1350 1360
1270 1280 1290 1300 1310 1320
pF1KB4 ITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKT
:::::::::::::. .::.:::. :.:::. :. :::::.:::::: :::.:.:.::.::
CCDS22 ITYHCKNSIAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKT
1370 1380 1390 1400 1410 1420
1330 1340 1350 1360
pF1KB4 IIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
..::.: : :::..:::: :::: :::: ::.:::::
CCDS22 VFEYRTRKAVRLPIVDIAPYDIGGPDQEFGVDVGPVCFL
1430 1440 1450 1460
>>CCDS12222.1 COL5A3 gene_id:50509|Hs108|chr19 (1745 aa)
initn: 5301 init1: 2998 opt: 3869 Z-score: 1516.8 bits: 293.4 E(32554): 3.6e-78
Smith-Waterman score: 3932; 45.2% identity (59.8% similar) in 1382 aa overlap (32-1365:391-1743)
10 20 30 40 50
pF1KB4 LSFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRG---ERGPPGPPGRDGEDGP
.:: : ::.: ::::::: :. ::
CCDS12 PSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGDPGP
370 380 390 400 410 420
60 70 80 90
pF1KB4 TGPPGPPGPPG------PPGL---------GGNFAA------QYDGKGVGLGPGPMGLMG
:: : :: :: ::: ::.: . : ....: : ... :
CCDS12 PGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAV-LQQTQLSMKG
430 440 450 460 470
100 110 120 130 140 150
pF1KB4 PRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG---PAGPPGKAGEDGHPGKPGRPG
: :: : .: ::: :. : : :: : :: : :: : ::::..:. :.:: : :
CCDS12 PPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARG
480 490 500 510 520 530
160 170 180 190 200 210
pF1KB4 ERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTG
: .::.: ::: : ::::: :: :: : : : :: : .: : :: .: :. :
CCDS12 LPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPG
540 550 560 570 580 590
220 230 240 250 260 270
pF1KB4 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAG
::: : :: : : :. : ::. : : .:: : :::: : : .: : : :
CCDS12 PRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIG
600 610 620 630 640 650
280 290 300 310 320 330
pF1KB4 PAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVG
: :: :. :.::: : :: :.:: .: :: ::: : :: :: :: :::::. : :
CCDS12 TPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSG
660 670 680 690 700 710
340 350 360 370 380 390
pF1KB4 AAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPG
: : .: :: : : ::. : ::. :. : : ::: ::.: .::.:.::.:: :
CCDS12 NRGLQGEKGEKGEDGFPGFKGDVGLKGDQGK--P-GAPGPRGEDGPEGPKGQAGQAGEEG
720 730 740 750 760 770
400 410 420 430 440 450
pF1KB4 PPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPG
::: : :. :.:: : : :: :: : :: : : .: .:. :.::: : :: ::
CCDS12 PPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPG
780 790 800 810 820 830
460 470 480 490 500 510
pF1KB4 SPGNIG-PA--GKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKG
: :. : :. :. :: : : :: :: : : : : :::::::: : ::.: :
CCDS12 SRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPG
840 850 860 870 880 890
520 530 540 550 560 570
pF1KB4 HAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPG
: : :: : .:.. ::::: :: : .:. : .:: : .: ::: :: :: : ::
CCDS12 H---PGQRGELGFQGQT---GPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPG
900 910 920 930 940 950
580 590 600 610 620
pF1KB4 ---ERGLHGEFGLPGP---AGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPG
..: .::.: ::: :: : :: :: .:. : :: : .: .::::: : .: ::
CCDS12 LEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG
960 970 980 990 1000 1010
630 640 650 660 670 680
pF1KB4 VVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPG
: .: :.: ::::. :. : : :.:: ::: : :: : : :: .: :
CCDS12 ERGPLG---PAGGIGLPGQSGSEGPVGPAGKKGS---RGERGPPGPTGKDGIPGPLGPLG
1020 1030 1040 1050 1060
690 700 710 720 730 740
pF1KB4 PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKG
: ::.: :: : : .: : .:: :..:..:: : :. :::: : ::: : .: .:
CCDS12 PPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRG
1070 1080 1090 1100 1110 1120
750 760 770 780 790 800
pF1KB4 PKG---ENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSG
: : ..: : : ::. :: : .: ::: : .:. : : : :: : :: ::.:
CCDS12 PPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTG
1130 1140 1150 1160 1170 1180
810 820 830 840 850 860
pF1KB4 ISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPG
: :: :: .:. : : .:..: .: : :: ::. : :: :: : .:: :. :
CCDS12 SEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGA---PGIPGPKGDIGEKGDSGPSGAAG
1190 1200 1210 1220 1230 1240
870 880 890 900 910 920
pF1KB4 PQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPG
: : : :: : :: : :::: : :.:: :: : :: .: :: ::.:: :: :
CCDS12 PPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASG
1250 1260 1270 1280 1290 1300
930 940 950 960 970 980
pF1KB4 EAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETG
: : : ::. :: :. :. :..::.: :. :: : : :: : :: :. : .: :
CCDS12 EPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRG
1310 1320 1330 1340 1350 1360
990 1000 1010 1020 1030
pF1KB4 PSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGL---PGIAGHHG
:::: : .: : :: : : .: :: :: : : ::: :: :: :: ::..:
CCDS12 IPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKG
1370 1380 1390 1400 1410 1420
1040 1050 1060 1070 1080 1090
pF1KB4 DQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGP---PGPPG
::: :: :: ::.: :: :: :. :. : ::..:: : .: .: : :: :: :
CCDS12 DQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAG
1430 1440 1450 1460 1470 1480
1100 1110 1120 1130 1140 1150
pF1KB4 PPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSR
::::::. . . . : : : .. :: :.: ::. ..: : : :.
CCDS12 PPGPPGAPAELHGLRRRRRFV----PVPLPVVEGGLEEVLASLTSLSLELEQLRRPPGTA
1490 1500 1510 1520 1530
1160 1170 1180 1190 1200 1210
pF1KB4 KNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG-ETCIRAQP--ENIPA
. :. .:..:. .::. .: :::::::::. :...:.:.:..: :::. . : .
CCDS12 ERPGLVCHELHRNHPHLPDGEYWIDPNQGCARDSFRVFCNFTAGGETCLYPDKKFEIVKL
1540 1550 1560 1570 1580 1590
1220 1230 1240 1250 1260 1270
pF1KB4 KNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCK
.: ::.: : . :. :..: : :.. : ..:: :..::. : ::.:: :.
CCDS12 ASW---SKEKPGGWYS-TFRRGKKFSY-VDADGSPVNVVQLNFLKLLSATARQNFTYSCQ
1600 1610 1620 1630 1640 1650
1280 1290 1300 1310 1320 1330
pF1KB4 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKT
:. :..:: ::. .... . :.: :: . .. : .: ::: . .. ::..:...
CCDS12 NAAAWLDEATGDYSHSARFLGTNGEELSFNQTTAATVSVPQDGCRLRKGQ-TKTLFEFSS
1660 1670 1680 1690 1700 1710
1340 1350 1360
pF1KB4 NKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
.. . ::. :.: :.: ..:.: ..:::::
CCDS12 SRAGFLPLWDVAATDFGQTNQKFGFELGPVCFSS
1720 1730 1740
>>CCDS780.2 COL11A1 gene_id:1301|Hs108|chr1 (1690 aa)
initn: 8789 init1: 3112 opt: 3662 Z-score: 1437.0 bits: 278.6 E(32554): 1e-73
Smith-Waterman score: 4084; 47.1% identity (60.1% similar) in 1394 aa overlap (33-1365:332-1688)
10 20 30 40 50 60
pF1KB4 SFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPP
:::: :: : .:: :::: :. :: : :
CCDS78 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP
310 320 330 340 350 360
70 80 90 100
pF1KB4 GPPGP---PGPPGLGGNFAAQYDGKGVGLGP---------------GPMGLMGPRGPPGA
: :: ::::: . .: : : . :: . ..: :: :: :
CCDS78 GLPGADGLPGPPGTMLMLPFRYGGDG-SKGPTISAQEAQAQAILQQARIALRGPPGPMGL
370 380 390 400 410 420
110 120 130 140 150 160
pF1KB4 AGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGA
.: ::: : : .: :: :. :: : :: :::: .:. :. :.:: : ::. : ::
CCDS78 TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGA
430 440 450 460 470 480
170 180 190 200 210 220
pF1KB4 ---RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGE
::: : ::::: :: ::. : .: : :: :..:: : : : ::..: ::: :
CCDS78 KGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP
490 500 510 520 530 540
230 240 250 260 270 280
pF1KB4 RGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGP
:: :::: : : :: :: : :: : :::: : :::.: : : :: : ::
CCDS78 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP
550 560 570 580 590 600
290 300 310 320 330 340
pF1KB4 RGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA
.:. :: :: : ::::.:: .: .: ::: : :: : : :::::. : :. : :.
CCDS78 QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS
610 620 630 640 650 660
350 360 370 380 390 400
pF1KB4 RGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS
.: :: : : ::. : ::. : .: :: ::.: .::.:.:: .: ::: : :
CCDS78 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGP---RGEDGPEGPKGRAGPTGDPGPSGQAGE
670 680 690 700 710
410 420 430 440 450
pF1KB4 PGSRGLPGADGRAGVMGPPGSRGASG-PA--GVRGPNGDAGRPGEPGLMGPRGLPGSPGN
:. :.:: : : .:: :: : : :. : .: : ::.:: : :: : :: :
CCDS78 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA
720 730 740 750 760 770
460 470 480 490 500 510
pF1KB4 IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGH------
::.:: :: : : :: ::: : : .: : .:::::::: : :::.: ::
CCDS78 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE
780 790 800 810 820 830
520 530 540 550 560 570
pF1KB4 AGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGE
.:. : : ::: : : ::: : : : .:. :: :::: ::::: .: : : ::
CCDS78 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP
840 850 860 870 880 890
580 590 600 610 620 630
pF1KB4 RGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGT
.:. :. :::: :: : : :: : : :..::.::::: :. :: : .
CCDS78 QGISGK---DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG------S
900 910 920 930 940
640 650 660 670 680 690
pF1KB4 AGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD
:: .:: ::::. : : :: :::: :: .: : ::::..: : :: ::::: .:.
CCDS78 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQG-P--VGLPGPAGPAGS
950 960 970 980 990 1000
700 710 720 730 740 750
pF1KB4 RGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGV
:: : : : : .:: :..:: :: :: :. ::.:: :: : : ::.:..:.
CCDS78 PGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGA---PGIAGGDGEPGPRGQQGM
1010 1020 1030 1040 1050 1060
760 770 780 790 800
pF1KB4 VGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGP---
: : :: : : ::::: : .: :::: : : .: ::::: : :: ::
CCDS78 FGQKGDEGARG--FP-GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGA
1070 1080 1090 1100 1110
810 820 830 840 850 860
pF1KB4 PGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGE---AGTAGPPGTPGPQGL
:: : : : : : :. ::.: :::: :: ::.:: : :::::. :: :
CCDS78 DGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA
1120 1130 1140 1150 1160 1170
870 880 890 900 910 920
pF1KB4 LGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGR
: :: : :. : :.:: : ::::: : : : .: : :.:: : ::::
CCDS78 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP
1180 1190 1200 1210 1220 1230
930 940 950 960 970 980
pF1KB4 DGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGP
: ::. :::: : :..::.: :. : : : :: :: ::::: : .: : ::
CCDS78 PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP
1240 1250 1260 1270 1280 1290
990 1000 1010 1020 1030 1040
pF1KB4 VG----P--AGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGD
:: : :: :: :: :: :. : ::.:: :: .: ::: :: : :: :..::
CCDS78 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL---IGLIGPPGEQGEKGD
1300 1310 1320 1330 1340 1350
1050 1060 1070 1080 1090
pF1KB4 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGP------PGP
.: ::. : : .: .: :::: : : :: :: : .: .: :::: :::
CCDS78 RGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP
1360 1370 1380 1390 1400 1410
1100 1110 1120 1130 1140
pF1KB4 PGPPGPPG--------VSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQI
:: ::::: .:. .: ..:: . . :. ..:.::...:
CCDS78 PGSPGPPGEVIQPLPILSSKKTRRHTEG--MQADADDNILDYSDGMEEIFGSLNSLKQDI
1420 1430 1440 1450 1460 1470
1150 1160 1170 1180 1190 1200
pF1KB4 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG-ETCIR
: . : :.. ::::::.::.::::.. .: :::::::::. :..::::.:..: ::::
CCDS78 EHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIY
1480 1490 1500 1510 1520 1530
1210 1220 1230 1240 1250 1260
pF1KB4 A--QPENIPAKNWYRSSKDKKHVWLGETINAGSQFEY-NVEGVTSKEMATQLAFMRLLAN
. :.. ..: :.: :..: .. :. . : .::: .: .:. :..:..::.
CCDS78 PDKKSEGVRISSW---PKEKPGSWFSE-FKRGKLLSYLDVEG-NSINMV-QMTFLKLLTA
1540 1550 1560 1570 1580
1270 1280 1290 1300 1310 1320
pF1KB4 YASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGC-SKKT
: ::.::::..: :..: .:. ::. . :::: :. ..: : : : ::: :.:
CCDS78 SARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP-FIKT-LYDGCASRKG
1590 1600 1610 1620 1630 1640
1330 1340 1350 1360
pF1KB4 NEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
: ::.:: .: : ...:..:. :.: .:.: ..:::::
CCDS78 YE--KTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
1650 1660 1670 1680 1690
>>CCDS53348.1 COL11A1 gene_id:1301|Hs108|chr1 (1767 aa)
initn: 8789 init1: 3112 opt: 3662 Z-score: 1436.8 bits: 278.6 E(32554): 1e-73
Smith-Waterman score: 4084; 47.1% identity (60.1% similar) in 1394 aa overlap (33-1365:409-1765)
10 20 30 40 50 60
pF1KB4 SFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPP
:::: :: : .:: :::: :. :: : :
CCDS53 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP
380 390 400 410 420 430
70 80 90 100
pF1KB4 GPPGP---PGPPGLGGNFAAQYDGKGVGLGP---------------GPMGLMGPRGPPGA
: :: ::::: . .: : : . :: . ..: :: :: :
CCDS53 GLPGADGLPGPPGTMLMLPFRYGGDG-SKGPTISAQEAQAQAILQQARIALRGPPGPMGL
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB4 AGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGA
.: ::: : : .: :: :. :: : :: :::: .:. :. :.:: : ::. : ::
CCDS53 TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGA
500 510 520 530 540 550
170 180 190 200 210 220
pF1KB4 ---RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGE
::: : ::::: :: ::. : .: : :: :..:: : : : ::..: ::: :
CCDS53 KGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP
560 570 580 590 600 610
230 240 250 260 270 280
pF1KB4 RGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGP
:: :::: : : :: :: : :: : :::: : :::.: : : :: : ::
CCDS53 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP
620 630 640 650 660 670
290 300 310 320 330 340
pF1KB4 RGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA
.:. :: :: : ::::.:: .: .: ::: : :: : : :::::. : :. : :.
CCDS53 QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS
680 690 700 710 720 730
350 360 370 380 390 400
pF1KB4 RGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS
.: :: : : ::. : ::. : .: :: ::.: .::.:.:: .: ::: : :
CCDS53 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGP---RGEDGPEGPKGRAGPTGDPGPSGQAGE
740 750 760 770 780 790
410 420 430 440 450
pF1KB4 PGSRGLPGADGRAGVMGPPGSRGASG-PA--GVRGPNGDAGRPGEPGLMGPRGLPGSPGN
:. :.:: : : .:: :: : : :. : .: : ::.:: : :: : :: :
CCDS53 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA
800 810 820 830 840 850
460 470 480 490 500 510
pF1KB4 IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGH------
::.:: :: : : :: ::: : : .: : .:::::::: : :::.: ::
CCDS53 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE
860 870 880 890 900 910
520 530 540 550 560 570
pF1KB4 AGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGE
.:. : : ::: : : ::: : : : .:. :: :::: ::::: .: : : ::
CCDS53 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP
920 930 940 950 960 970
580 590 600 610 620 630
pF1KB4 RGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGT
.:. :. :::: :: : : :: : : :..::.::::: :. :: : .
CCDS53 QGISGK---DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG------S
980 990 1000 1010 1020
640 650 660 670 680 690
pF1KB4 AGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD
:: .:: ::::. : : :: :::: :: .: : ::::..: : :: ::::: .:.
CCDS53 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQG-P--VGLPGPAGPAGS
1030 1040 1050 1060 1070 1080
700 710 720 730 740 750
pF1KB4 RGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGV
:: : : : : .:: :..:: :: :: :. ::.:: :: : : ::.:..:.
CCDS53 PGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGA---PGIAGGDGEPGPRGQQGM
1090 1100 1110 1120 1130
760 770 780 790 800
pF1KB4 VGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGP---
: : :: : : ::::: : .: :::: : : .: ::::: : :: ::
CCDS53 FGQKGDEGARG--FP-GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGA
1140 1150 1160 1170 1180 1190
810 820 830 840 850 860
pF1KB4 PGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGE---AGTAGPPGTPGPQGL
:: : : : : : :. ::.: :::: :: ::.:: : :::::. :: :
CCDS53 DGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA
1200 1210 1220 1230 1240 1250
870 880 890 900 910 920
pF1KB4 LGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGR
: :: : :. : :.:: : ::::: : : : .: : :.:: : ::::
CCDS53 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP
1260 1270 1280 1290 1300 1310
930 940 950 960 970 980
pF1KB4 DGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGP
: ::. :::: : :..::.: :. : : : :: :: ::::: : .: : ::
CCDS53 PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP
1320 1330 1340 1350 1360 1370
990 1000 1010 1020 1030 1040
pF1KB4 VG----P--AGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGD
:: : :: :: :: :: :. : ::.:: :: .: ::: :: : :: :..::
CCDS53 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL---IGLIGPPGEQGEKGD
1380 1390 1400 1410 1420 1430
1050 1060 1070 1080 1090
pF1KB4 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGP------PGP
.: ::. : : .: .: :::: : : :: :: : .: .: :::: :::
CCDS53 RGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP
1440 1450 1460 1470 1480 1490
1100 1110 1120 1130 1140
pF1KB4 PGPPGPPG--------VSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQI
:: ::::: .:. .: ..:: . . :. ..:.::...:
CCDS53 PGSPGPPGEVIQPLPILSSKKTRRHTEG--MQADADDNILDYSDGMEEIFGSLNSLKQDI
1500 1510 1520 1530 1540 1550
1150 1160 1170 1180 1190 1200
pF1KB4 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG-ETCIR
: . : :.. ::::::.::.::::.. .: :::::::::. :..::::.:..: ::::
CCDS53 EHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIY
1560 1570 1580 1590 1600 1610
1210 1220 1230 1240 1250 1260
pF1KB4 A--QPENIPAKNWYRSSKDKKHVWLGETINAGSQFEY-NVEGVTSKEMATQLAFMRLLAN
. :.. ..: :.: :..: .. :. . : .::: .: .:. :..:..::.
CCDS53 PDKKSEGVRISSW---PKEKPGSWFSE-FKRGKLLSYLDVEG-NSINMV-QMTFLKLLTA
1620 1630 1640 1650 1660
1270 1280 1290 1300 1310 1320
pF1KB4 YASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGC-SKKT
: ::.::::..: :..: .:. ::. . :::: :. ..: : : : ::: :.:
CCDS53 SARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP-FIKT-LYDGCASRKG
1670 1680 1690 1700 1710 1720
1330 1340 1350 1360
pF1KB4 NEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
: ::.:: .: : ...:..:. :.: .:.: ..:::::
CCDS53 YE--KTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
1730 1740 1750 1760
>>CCDS778.1 COL11A1 gene_id:1301|Hs108|chr1 (1806 aa)
initn: 8789 init1: 3112 opt: 3662 Z-score: 1436.7 bits: 278.7 E(32554): 1e-73
Smith-Waterman score: 4084; 47.1% identity (60.1% similar) in 1394 aa overlap (33-1365:448-1804)
10 20 30 40 50 60
pF1KB4 SFVDTRTLLLLAVTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPP
:::: :: : .:: :::: :. :: : :
CCDS77 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP
420 430 440 450 460 470
70 80 90 100
pF1KB4 GPPGP---PGPPGLGGNFAAQYDGKGVGLGP---------------GPMGLMGPRGPPGA
: :: ::::: . .: : : . :: . ..: :: :: :
CCDS77 GLPGADGLPGPPGTMLMLPFRYGGDG-SKGPTISAQEAQAQAILQQARIALRGPPGPMGL
480 490 500 510 520 530
110 120 130 140 150 160
pF1KB4 AGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGA
.: ::: : : .: :: :. :: : :: :::: .:. :. :.:: : ::. : ::
CCDS77 TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGA
540 550 560 570 580 590
170 180 190 200 210 220
pF1KB4 ---RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGE
::: : ::::: :: ::. : .: : :: :..:: : : : ::..: ::: :
CCDS77 KGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP
600 610 620 630 640 650
230 240 250 260 270 280
pF1KB4 RGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGP
:: :::: : : :: :: : :: : :::: : :::.: : : :: : ::
CCDS77 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP
660 670 680 690 700 710
290 300 310 320 330 340
pF1KB4 RGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA
.:. :: :: : ::::.:: .: .: ::: : :: : : :::::. : :. : :.
CCDS77 QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS
720 730 740 750 760 770
350 360 370 380 390 400
pF1KB4 RGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS
.: :: : : ::. : ::. : .: :: ::.: .::.:.:: .: ::: : :
CCDS77 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGP---RGEDGPEGPKGRAGPTGDPGPSGQAGE
780 790 800 810 820 830
410 420 430 440 450
pF1KB4 PGSRGLPGADGRAGVMGPPGSRGASG-PA--GVRGPNGDAGRPGEPGLMGPRGLPGSPGN
:. :.:: : : .:: :: : : :. : .: : ::.:: : :: : :: :
CCDS77 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA
840 850 860 870 880 890
460 470 480 490 500 510
pF1KB4 IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGH------
::.:: :: : : :: ::: : : .: : .:::::::: : :::.: ::
CCDS77 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE
900 910 920 930 940 950
520 530 540 550 560 570
pF1KB4 AGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGE
.:. : : ::: : : ::: : : : .:. :: :::: ::::: .: : : ::
CCDS77 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP
960 970 980 990 1000 1010
580 590 600 610 620 630
pF1KB4 RGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGT
.:. :. :::: :: : : :: : : :..::.::::: :. :: : .
CCDS77 QGISGK---DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG------S
1020 1030 1040 1050 1060
640 650 660 670 680 690
pF1KB4 AGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD
:: .:: ::::. : : :: :::: :: .: : ::::..: : :: ::::: .:.
CCDS77 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQG-P--VGLPGPAGPAGS
1070 1080 1090 1100 1110 1120
700 710 720 730 740 750
pF1KB4 RGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGV
:: : : : : .:: :..:: :: :: :. ::.:: :: : : ::.:..:.
CCDS77 PGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGA---PGIAGGDGEPGPRGQQGM
1130 1140 1150 1160 1170
760 770 780 790 800
pF1KB4 VGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGP---
: : :: : : ::::: : .: :::: : : .: ::::: : :: ::
CCDS77 FGQKGDEGARG--FP-GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGA
1180 1190 1200 1210 1220 1230
810 820 830 840 850 860
pF1KB4 PGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGE---AGTAGPPGTPGPQGL
:: : : : : : :. ::.: :::: :: ::.:: : :::::. :: :
CCDS77 DGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA
1240 1250 1260 1270 1280 1290
870 880 890 900 910 920
pF1KB4 LGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGR
: :: : :. : :.:: : ::::: : : : .: : :.:: : ::::
CCDS77 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP
1300 1310 1320 1330 1340 1350
930 940 950 960 970 980
pF1KB4 DGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGP
: ::. :::: : :..::.: :. : : : :: :: ::::: : .: : ::
CCDS77 PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP
1360 1370 1380 1390 1400 1410
990 1000 1010 1020 1030 1040
pF1KB4 VG----P--AGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGD
:: : :: :: :: :: :. : ::.:: :: .: ::: :: : :: :..::
CCDS77 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL---IGLIGPPGEQGEKGD
1420 1430 1440 1450 1460 1470
1050 1060 1070 1080 1090
pF1KB4 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGP------PGP
.: ::. : : .: .: :::: : : :: :: : .: .: :::: :::
CCDS77 RGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP
1480 1490 1500 1510 1520 1530
1100 1110 1120 1130 1140
pF1KB4 PGPPGPPG--------VSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQI
:: ::::: .:. .: ..:: . . :. ..:.::...:
CCDS77 PGSPGPPGEVIQPLPILSSKKTRRHTEG--MQADADDNILDYSDGMEEIFGSLNSLKQDI
1540 1550 1560 1570 1580 1590
1150 1160 1170 1180 1190 1200
pF1KB4 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG-ETCIR
: . : :.. ::::::.::.::::.. .: :::::::::. :..::::.:..: ::::
CCDS77 EHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIY
1600 1610 1620 1630 1640 1650
1210 1220 1230 1240 1250 1260
pF1KB4 A--QPENIPAKNWYRSSKDKKHVWLGETINAGSQFEY-NVEGVTSKEMATQLAFMRLLAN
. :.. ..: :.: :..: .. :. . : .::: .: .:. :..:..::.
CCDS77 PDKKSEGVRISSW---PKEKPGSWFSE-FKRGKLLSYLDVEG-NSINMV-QMTFLKLLTA
1660 1670 1680 1690 1700
1270 1280 1290 1300 1310 1320
pF1KB4 YASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGC-SKKT
: ::.::::..: :..: .:. ::. . :::: :. ..: : : : ::: :.:
CCDS77 SARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP-FIKT-LYDGCASRKG
1710 1720 1730 1740 1750 1760
1330 1340 1350 1360
pF1KB4 NEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK
: ::.:: .: : ...:..:. :.: .:.: ..:::::
CCDS77 YE--KTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
1770 1780 1790 1800
1366 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:27:34 2016 done: Thu Nov 3 15:27:35 2016
Total Scan time: 6.460 Total Display time: 0.800
Function used was FASTA [36.3.4 Apr, 2011]