FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4745, 373 aa
  1>>>pF1KB4745 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8464+/-0.00106; mu= 13.0511+/- 0.063
 mean_var=63.0414+/-13.197, 0's: 0 Z-trim(102.8): 24  B-trim: 294 in 1/48
 Lambda= 0.161533
 statistics sampled from 7095 (7108) to 7095 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.218), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS7297.1 AIFM2 gene_id:84883|Hs108|chr10         ( 373) 2365 560.2 1.1e-159


>>CCDS7297.1 AIFM2 gene_id:84883|Hs108|chr10              (373 aa)
 initn: 2365 init1: 2365 opt: 2365  Z-score: 2980.5  bits: 560.2 E(32554): 1.1e-159
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB4 MGSQVSVESGALHVVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MGSQVSVESGALHVVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVETG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 FAKKTFISYSVTFKDNFRQGLVVGIDLKNQMVLLQGGEALPFSHLILATGSTGPFPGKFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FAKKTFISYSVTFKDNFRQGLVVGIDLKNQMVLLQGGEALPFSHLILATGSTGPFPGKFN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQVALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQVALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DKELLPSVRQEVKEILLRKGVQLLLSERVSNLEELPLNEYREYIKVQTDKGTEVATNLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DKELLPSVRQEVKEILLRKGVQLLLSERVSNLEELPLNEYREYIKVQTDKGTEVATNLVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LCTGIKINSSAYRKAFESRLASSGALRVNEHLQVEGHSNVYAIGDCADVRTPKMAYLAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LCTGIKINSSAYRKAFESRLASSGALRVNEHLQVEGHSNVYAIGDCADVRTPKMAYLAGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 HANIAVANIVNSVKQRPLQAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLTKSRDLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HANIAVANIVNSVKQRPLQAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLTKSRDLF
              310       320       330       340       350       360

              370   
pF1KB4 VSTSWKTMRQSPP
       :::::::::::::
CCDS72 VSTSWKTMRQSPP
              370   




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:28:14 2016 done: Thu Nov  3 15:28:15 2016
 Total Scan time:  2.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]