Result of FASTA (omim) for
pF1KB4784
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4784, 271 aa
1>>>pF1KB4784 271 - 271 aa - 271 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2735+/-0.000389; mu= 14.4248+/- 0.024
mean_var=62.3098+/-12.698, 0's: 0 Z-trim(111.5): 33 B-trim: 1127 in 1/53
Lambda= 0.162479
statistics sampled from 20126 (20157) to 20126 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.236), width: 16
Scan time: 6.810
The best scores are: opt bits E(85289)
NP_005721 (OMIM: 608711) carboxy-terminal domain R ( 271) 1806 432.1 5.2e-121
XP_005268613 (OMIM: 608711) PREDICTED: carboxy-ter ( 277) 1784 427.0 1.9e-119
NP_001008393 (OMIM: 608592) CTD small phosphatase- ( 276) 1083 262.6 5.5e-70
XP_016861008 (OMIM: 608592) PREDICTED: CTD small p ( 297) 1083 262.7 5.9e-70
XP_016861009 (OMIM: 608592) PREDICTED: CTD small p ( 282) 1073 260.3 2.9e-69
NP_005799 (OMIM: 608592) CTD small phosphatase-lik ( 265) 990 240.8 1.9e-63
NP_067021 (OMIM: 605323) carboxy-terminal domain R ( 261) 981 238.7 8.3e-63
XP_011509871 (OMIM: 605323) PREDICTED: carboxy-ter ( 394) 981 238.8 1.2e-62
NP_872580 (OMIM: 605323) carboxy-terminal domain R ( 260) 976 237.5 1.9e-62
NP_001193807 (OMIM: 605323) carboxy-terminal domai ( 260) 976 237.5 1.9e-62
XP_011509872 (OMIM: 605323) PREDICTED: carboxy-ter ( 393) 976 237.6 2.7e-62
XP_016860106 (OMIM: 605323) PREDICTED: carboxy-ter ( 276) 825 202.2 8.9e-52
XP_016860104 (OMIM: 605323) PREDICTED: carboxy-ter ( 409) 825 202.2 1.2e-51
XP_016860107 (OMIM: 605323) PREDICTED: carboxy-ter ( 275) 820 201.0 2e-51
XP_016860105 (OMIM: 605323) PREDICTED: carboxy-ter ( 408) 820 201.1 2.8e-51
NP_001137247 (OMIM: 610684) CTD nuclear envelope p ( 244) 415 106.0 6.8e-23
NP_056158 (OMIM: 610684) CTD nuclear envelope phos ( 244) 415 106.0 6.8e-23
NP_001316488 (OMIM: 607381) mitochondrial import i ( 240) 240 65.0 1.5e-10
XP_011525793 (OMIM: 607381) PREDICTED: mitochondri ( 341) 240 65.1 2e-10
NP_001001563 (OMIM: 607381) mitochondrial import i ( 456) 240 65.1 2.6e-10
NP_001189433 (OMIM: 604168,604927) RNA polymerase ( 842) 141 42.1 0.0043
XP_011524563 (OMIM: 604168,604927) PREDICTED: RNA ( 851) 141 42.1 0.0043
NP_430255 (OMIM: 604168,604927) RNA polymerase II ( 867) 141 42.1 0.0044
NP_001305440 (OMIM: 604168,604927) RNA polymerase ( 867) 141 42.1 0.0044
NP_004706 (OMIM: 604168,604927) RNA polymerase II ( 961) 141 42.1 0.0048
>>NP_005721 (OMIM: 608711) carboxy-terminal domain RNA p (271 aa)
initn: 1806 init1: 1806 opt: 1806 Z-score: 2293.5 bits: 432.1 E(85289): 5.2e-121
Smith-Waterman score: 1806; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)
10 20 30 40 50 60
pF1KB4 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDM
190 200 210 220 230 240
250 260 270
pF1KB4 ADTELLNLIPIFEELSGAEDVYTSLGQLRAP
:::::::::::::::::::::::::::::::
NP_005 ADTELLNLIPIFEELSGAEDVYTSLGQLRAP
250 260 270
>>XP_005268613 (OMIM: 608711) PREDICTED: carboxy-termina (277 aa)
initn: 1259 init1: 1259 opt: 1784 Z-score: 2265.4 bits: 427.0 E(85289): 1.9e-119
Smith-Waterman score: 1784; 97.8% identity (97.8% similar) in 277 aa overlap (1-271:1-277)
10 20 30 40 50 60
pF1KB4 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 AYKEEANTIAKSDLLQCLQYQFYQ------IPGTCLLPEVTEEDQGRICVVIDLDETLVH
:::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 AYKEEANTIAKSDLLQCLQYQFYQVRDSGLIPGTCLLPEVTEEDQGRICVVIDLDETLVH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 SSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 DLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQ
190 200 210 220 230 240
240 250 260 270
pF1KB4 SWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
:::::::::::::::::::::::::::::::::::::
XP_005 SWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
250 260 270
>>NP_001008393 (OMIM: 608592) CTD small phosphatase-like (276 aa)
initn: 1093 init1: 1033 opt: 1083 Z-score: 1377.4 bits: 262.6 E(85289): 5.5e-70
Smith-Waterman score: 1083; 64.4% identity (78.9% similar) in 275 aa overlap (1-268:1-273)
10 20 30 40 50
pF1KB4 MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHV--GQS
:. .::::. .:: : : ... : :: :.:.:....::::: .:
NP_001 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV
:: . : :: . . :.: : . . :. :::::: : :. :::::::::::
NP_001 SSPSVLPPLVEENGGLQKGDQRQVIPIP--SPPAKYLLPEVTVLDYGKKCVVIDLDETLV
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV
:::::::.:::::::.::.:: :::::::::.:::::.:::.::::::::::::::::::
NP_001 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV
.::::: :::::::::::::::.: ::::::::::.: :..:.:::::::::::::::::
NP_001 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV
180 190 200 210 220 230
240 250 260 270
pF1KB4 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
:::::::.:::::.:::.:: :: .:::. : .:
NP_001 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
240 250 260 270
>>XP_016861008 (OMIM: 608592) PREDICTED: CTD small phosp (297 aa)
initn: 1093 init1: 1033 opt: 1083 Z-score: 1376.9 bits: 262.7 E(85289): 5.9e-70
Smith-Waterman score: 1083; 64.4% identity (78.9% similar) in 275 aa overlap (1-268:1-273)
10 20 30 40 50
pF1KB4 MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHV--GQS
:. .::::. .:: : : ... : :: :.:.:....::::: .:
XP_016 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV
:: . : :: . . :.: : . . :. :::::: : :. :::::::::::
XP_016 SSPSVLPPLVEENGGLQKGDQRQVIPIP--SPPAKYLLPEVTVLDYGKKCVVIDLDETLV
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV
:::::::.:::::::.::.:: :::::::::.:::::.:::.::::::::::::::::::
XP_016 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV
.::::: :::::::::::::::.: ::::::::::.: :..:.:::::::::::::::::
XP_016 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV
180 190 200 210 220 230
240 250 260 270
pF1KB4 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
:::::::.:::::.:::.:: :: .:::. : .:
XP_016 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNSWIHMELFGNFPCCYRAATKWN
240 250 260 270 280 290
>>XP_016861009 (OMIM: 608592) PREDICTED: CTD small phosp (282 aa)
initn: 1073 init1: 1033 opt: 1073 Z-score: 1364.6 bits: 260.3 E(85289): 2.9e-69
Smith-Waterman score: 1073; 69.1% identity (82.7% similar) in 243 aa overlap (28-268:18-258)
10 20 30 40 50
pF1KB4 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHV--GQSSSSTE
: :: :.:.:....::::: .: :: .
XP_016 MKDLRSELLQRASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSV
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 LAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFK
: :: . . :.: : . . :. :::::: : :. ::::::::::::::::
XP_016 LPPLVEENGGLQKGDQRQVIPIP--SPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFK
60 70 80 90 100
120 130 140 150 160 170
pF1KB4 PINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD
::.:::::::.::.:: :::::::::.:::::.:::.::::::::::::::::::.::::
XP_016 PISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFD
: :::::::::::::::.: ::::::::::.: :..:.::::::::::::::::::::::
XP_016 RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFD
170 180 190 200 210 220
240 250 260 270
pF1KB4 DMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
::.:::::.:::.:: :: .:::. : .:
XP_016 DMTDTELLDLIPFFEGLSREDDVYSMLHRLCNSWIHMELFGNFPCCYRAATKWN
230 240 250 260 270 280
>>NP_005799 (OMIM: 608592) CTD small phosphatase-like pr (265 aa)
initn: 1116 init1: 984 opt: 990 Z-score: 1259.9 bits: 240.8 E(85289): 1.9e-63
Smith-Waterman score: 1055; 63.6% identity (77.1% similar) in 275 aa overlap (1-268:1-262)
10 20 30 40 50
pF1KB4 MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHV--GQS
:. .::::. .:: : : ... : :: :.:.:....::::: .:
NP_005 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV
:: . : :: . . : :. :::::: : :. :::::::::::
NP_005 SSPSVLPPLVEENGGLQKP-------------PAKYLLPEVTVLDYGKKCVVIDLDETLV
70 80 90 100
120 130 140 150 160 170
pF1KB4 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV
:::::::.:::::::.::.:: :::::::::.:::::.:::.::::::::::::::::::
NP_005 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV
.::::: :::::::::::::::.: ::::::::::.: :..:.:::::::::::::::::
NP_005 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV
170 180 190 200 210 220
240 250 260 270
pF1KB4 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
:::::::.:::::.:::.:: :: .:::. : .:
NP_005 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
230 240 250 260
>>NP_067021 (OMIM: 605323) carboxy-terminal domain RNA p (261 aa)
initn: 1038 init1: 973 opt: 981 Z-score: 1248.6 bits: 238.7 E(85289): 8.3e-63
Smith-Waterman score: 1049; 60.9% identity (80.1% similar) in 271 aa overlap (1-269:1-258)
10 20 30 40 50
pF1KB4 MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL
:. ...::: .:.: : .: .... .:::.:.:...:::: . :.. .
NP_067 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCV-CRDDGEALPAHSG
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 AAYK-EEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFK
: :: ..: : : : ::::. .:. .:::::::::::::::::
NP_067 APLLVEENGAIPK------------QTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFK
60 70 80 90 100
120 130 140 150 160 170
pF1KB4 PINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD
:.::::::.:.::.:..:::::::::.:::::.::::::::::::::::::::::.::::
NP_067 PVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFD
. :.:::::::::::::.: :::::::::::::..::::::::::.:::.::::: ::::
NP_067 KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFD
170 180 190 200 210 220
240 250 260 270
pF1KB4 DMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
.:.:::: .:.:.::.:: ..:::. : : :
NP_067 NMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
230 240 250 260
>>XP_011509871 (OMIM: 605323) PREDICTED: carboxy-termina (394 aa)
initn: 1038 init1: 973 opt: 981 Z-score: 1245.8 bits: 238.8 E(85289): 1.2e-62
Smith-Waterman score: 1021; 63.2% identity (81.6% similar) in 250 aa overlap (21-269:155-391)
10 20 30 40 50
pF1KB4 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHV
.: .... .:::.:.:...:::: .
XP_011 SPCGPQDLDAAPRSAHPRLGLAAPELRARWKGDQKSAASQKPRSRGILHSLFCCV-CRDD
130 140 150 160 170 180
60 70 80 90 100
pF1KB4 GQSSSSTELAAYK-EEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLD
:.. . : :: ..: : : : ::::. .:. .::::::::
XP_011 GEALPAHSGAPLLVEENGAIPK------------QTPVQYLLPEAKAQDSDKICVVIDLD
190 200 210 220 230
110 120 130 140 150 160
pF1KB4 ETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKY
::::::::::.::::::.:.::.:..:::::::::.:::::.::::::::::::::::::
XP_011 ETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKY
240 250 260 270 280 290
170 180 190 200 210 220
pF1KB4 ADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPEN
::::.::::. :.:::::::::::::.: :::::::::::::..::::::::::.:::.:
XP_011 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN
300 310 320 330 340 350
230 240 250 260 270
pF1KB4 AVPVQSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
:::: ::::.:.:::: .:.:.::.:: ..:::. : : :
XP_011 AVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
360 370 380 390
>>NP_872580 (OMIM: 605323) carboxy-terminal domain RNA p (260 aa)
initn: 1041 init1: 976 opt: 976 Z-score: 1242.3 bits: 237.5 E(85289): 1.9e-62
Smith-Waterman score: 1046; 60.9% identity (80.8% similar) in 271 aa overlap (1-269:1-257)
10 20 30 40 50
pF1KB4 MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL
:. ...::: .:.: : .: .... .:::.:.:...:::: . :.. .
NP_872 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCV-CRDDGEALPAHSG
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 AAYK-EEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFK
: :: ..: :. . :: ::::. .:. .:::::::::::::::::
NP_872 APLLVEENGAIPKTPV----QY---------LLPEAKAQDSDKICVVIDLDETLVHSSFK
60 70 80 90 100
120 130 140 150 160 170
pF1KB4 PINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD
:.::::::.:.::.:..:::::::::.:::::.::::::::::::::::::::::.::::
NP_872 PVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFD
. :.:::::::::::::.: :::::::::::::..::::::::::.:::.::::: ::::
NP_872 KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFD
170 180 190 200 210 220
240 250 260 270
pF1KB4 DMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
.:.:::: .:.:.::.:: ..:::. : : :
NP_872 NMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
230 240 250 260
>>NP_001193807 (OMIM: 605323) carboxy-terminal domain RN (260 aa)
initn: 1041 init1: 976 opt: 976 Z-score: 1242.3 bits: 237.5 E(85289): 1.9e-62
Smith-Waterman score: 1017; 63.2% identity (82.4% similar) in 250 aa overlap (21-269:22-257)
10 20 30 40 50
pF1KB4 MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL
.: .... .:::.:.:...:::: . :.. .
NP_001 MVAAPWATQEQEEGRGIQPGDRGDQKSAASQKPRSRGILHSLFCCV-CRDDGEALPAHSG
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 AAYK-EEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFK
: :: ..: :. .:: ::::. .:. .:::::::::::::::::
NP_001 APLLVEENGAIPKTP----VQY---------LLPEAKAQDSDKICVVIDLDETLVHSSFK
60 70 80 90 100
120 130 140 150 160 170
pF1KB4 PINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD
:.::::::.:.::.:..:::::::::.:::::.::::::::::::::::::::::.::::
NP_001 PVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFD
. :.:::::::::::::.: :::::::::::::..::::::::::.:::.::::: ::::
NP_001 KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFD
170 180 190 200 210 220
240 250 260 270
pF1KB4 DMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
.:.:::: .:.:.::.:: ..:::. : : :
NP_001 NMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
230 240 250 260
271 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:42:15 2016 done: Thu Nov 3 21:42:16 2016
Total Scan time: 6.810 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]