(Circular) (Six-base) MAPSORT of: pF1KB4802.seq Check: 1090 from: 1 to: 6629 pF1KB4802 6629 bp With 182 enzymes: SgfI * June 20, 2008 10:24 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2598 3625 2598 Size: 1027 5602 AccI GT'mk_AC Cuts at: 1908 3667 1908 Size: 1759 4870 Acc65I G'GTAC_C Cuts at: 3645 3645 Size: 6629 AclI AA'CG_TT Cuts at: 6469 6469 Size: 6629 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 2225 4454 4886 5633 5901 2225 Size: 2229 432 747 268 2953 Fragments arranged by size: 2953 2229 747 432 268 AfeI AGC'GCT Cuts at: 511 982 1333 1644 2713 511 Size: 471 351 311 1069 4427 Fragments arranged by size: 4427 1069 471 351 311 AflIII A'CryG_T Cuts at: 1078 3981 5085 6062 1078 Size: 2903 1104 977 1645 Fragments arranged by size: 2903 1645 1104 977 AgeI A'CCGG_T Cuts at: 3377 5017 3377 Size: 1640 4989 AleI CACnn'nnGTG Cuts at: 922 1397 922 Size: 475 6154 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 977 2990 977 Size: 2013 4616 AlwNI CAG_nnn'CTG Cuts at: 552 633 1896 1945 2100 2887 3171 3934 5501 Size: 81 1263 49 155 787 284 763 1567 Cuts at: 5501 552 Size: 1680 Fragments arranged by size: 1680 1567 1263 787 763 284 155 81 49 ApaI G_GGCC'C Cuts at: 485 1738 1793 485 Size: 1253 55 5321 Fragments arranged by size: 5321 1253 55 ApaLI G'TGCA_C Cuts at: 986 5399 986 Size: 4413 2216 ApoI r'AATT_y Cuts at: 728 3633 5982 6238 728 Size: 2905 2349 256 1119 Fragments arranged by size: 2905 2349 1119 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6629 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6629 AvaI C'yCGr_G Cuts at: 581 1209 1737 3649 581 Size: 628 528 1912 3561 Fragments arranged by size: 3561 1912 628 528 BamHI G'GATC_C Cuts at: 1976 3419 3654 1976 Size: 1443 235 4951 Fragments arranged by size: 4951 1443 235 BanI G'GyrC_C Cuts at: 623 1205 2389 3115 3304 3412 3645 4059 4307 Size: 582 1184 726 189 108 233 414 248 Cuts at: 4307 4342 623 Size: 35 2910 Fragments arranged by size: 2910 1184 726 582 414 248 233 189 108 35 BanII G_rGCy'C Cuts at: 485 1278 1738 1793 3027 3245 3643 4673 485 Size: 793 460 55 1234 218 398 1030 2441 Fragments arranged by size: 2441 1234 1030 793 460 398 218 55 BbeI G_GCGC'C Cuts at: 1209 4063 4311 1209 Size: 2854 248 3527 Fragments arranged by size: 3527 2854 248 BbsI GAAGACnn'nnnn_ Cuts at: 2423 3439 2423 Size: 1016 5613 BbvCI CC'TCA_GC Cuts at: 1573 2999 3005 3155 1573 Size: 1426 6 150 5047 Fragments arranged by size: 5047 1426 150 6 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 601 635 2665 2699 2803 2837 601 Size: 34 2030 34 104 34 4393 Fragments arranged by size: 4393 2030 104 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4527 5288 6629 4527 Size: 761 1341 4527 Fragments arranged by size: 4527 1341 761 BclI T'GATC_A Cuts at: 4149 4149 Size: 6629 BglI GCCn_nnn'nGGC Cuts at: 642 1778 1814 2587 2857 642 Size: 1136 36 773 270 4414 Fragments arranged by size: 4414 1136 773 270 36 BglII A'GATC_T Cuts at: 4144 6181 4144 Size: 2037 4592 BlpI GC'TnA_GC Cuts at: 2260 2294 2615 3537 3741 2260 Size: 34 321 922 204 5148 Fragments arranged by size: 5148 922 321 204 34 Bme1580I G_kGCm'C Cuts at: 485 791 990 1070 1609 1738 1793 2709 2985 Size: 306 199 80 539 129 55 916 276 Cuts at: 2985 3330 3417 4254 4347 5403 485 Size: 345 87 837 93 1056 1711 Fragments arranged by size: 1711 1056 916 837 539 345 306 276 199 129 93 87 80 55 BmgBI CAC'GTC Cuts at: 1686 1686 Size: 6629 BmrI ACTGGGnnnn_n' Cuts at: 273 1282 3841 3922 4257 6401 273 Size: 1009 2559 81 335 2144 501 Fragments arranged by size: 2559 2144 1009 501 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 531 2035 4996 531 Size: 1504 2961 2164 Fragments arranged by size: 2961 2164 1504 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 303 1032 1972 2077 2140 2173 2443 2463 2629 Size: 729 940 105 63 33 270 20 166 Cuts at: 2629 3577 303 Size: 948 3355 Fragments arranged by size: 3355 948 940 729 270 166 105 63 33 20 Bpu10I CC'TnA_GC Cuts at: 1573 2054 2332 2999 3005 3098 3155 1573 Size: 481 278 667 6 93 57 5047 Fragments arranged by size: 5047 667 481 278 93 57 6 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 777 3805 4684 5176 5474 777 Size: 3028 879 492 298 1932 Fragments arranged by size: 3028 1932 879 492 298 BsaI GGTCTCn'nnnn_ Cuts at: 105 259 1008 1222 2141 2185 2307 2713 3454 Size: 154 749 214 919 44 122 406 741 Cuts at: 3454 6333 105 Size: 2879 401 Fragments arranged by size: 2879 919 749 741 406 401 214 154 122 44 BsaAI yAC'GTr Cuts at: 3982 3982 Size: 6629 BsaBI GATnn'nnATC Cuts at: 6 4143 6180 6 Size: 4137 2037 455 Fragments arranged by size: 4137 2037 455 BsaHI Gr'CG_yC Cuts at: 1034 1206 4060 4308 5010 6506 1034 Size: 172 2854 248 702 1496 1157 Fragments arranged by size: 2854 1496 1157 702 248 172 BsaWI w'CCGG_w Cuts at: 1196 1254 1670 2252 3377 3818 4339 5017 5291 Size: 58 416 582 1125 441 521 678 274 Cuts at: 5291 5438 5849 1196 Size: 147 411 1976 Fragments arranged by size: 1976 1125 678 582 521 441 416 411 274 147 58 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 553 583 2116 2119 2146 2149 553 Size: 30 1533 3 27 3 5033 Fragments arranged by size: 5033 1533 30 27 3 3 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 504 1459 2137 2140 2393 2396 2399 3253 3460 Size: 955 678 3 253 3 3 854 207 Cuts at: 3460 504 Size: 3673 Fragments arranged by size: 3673 955 854 678 253 207 3 3 3 BseYI C'CCAG_C Cuts at: 811 833 2639 2708 3213 3287 3399 4054 4812 Size: 22 1806 69 505 74 112 655 758 Cuts at: 4812 5389 5885 811 Size: 577 496 1555 Fragments arranged by size: 1806 1555 758 655 577 505 496 112 74 69 22 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 258 549 946 1171 1342 1659 258 Size: 291 397 225 171 317 5228 Fragments arranged by size: 5228 397 317 291 225 171 BsiEI CG_ry'CG Cuts at: 104 4171 4217 5425 104 Size: 4067 46 1208 1308 Fragments arranged by size: 4067 1308 1208 46 BsiHKAI G_wGCw'C Cuts at: 990 1506 2266 3245 3605 3643 4421 4611 5403 Size: 516 760 979 360 38 778 190 792 Cuts at: 5403 990 Size: 2216 Fragments arranged by size: 2216 979 792 778 760 516 360 190 38 BsmI GAATG_Cn' Cuts at: 1048 1048 Size: 6629 BsmBI CGTCTCn'nnnn_ Cuts at: 1676 2122 1676 Size: 446 6183 Bsp1286I G_dGCh'C Cuts at: 485 791 990 1070 1278 1506 1609 1738 1793 Size: 306 199 80 208 228 103 129 55 Cuts at: 1793 2266 2709 2985 3027 3245 3330 3417 3605 Size: 473 443 276 42 218 85 87 188 Cuts at: 3605 3643 4254 4347 4421 4611 4673 5403 485 Size: 38 611 93 74 190 62 730 1711 Fragments arranged by size: 1711 730 611 473 443 306 276 228 218 208 199 190 188 129 103 93 87 85 80 74 62 55 42 38 BspEI T'CCGG_A Cuts at: 1196 1254 2252 5849 1196 Size: 58 998 3597 1976 Fragments arranged by size: 3597 1976 998 58 BspHI T'CATG_A Cuts at: 464 5805 464 Size: 5341 1288 BspMI ACCTGCnnnn'nnnn_ Cuts at: 212 918 1240 2289 2598 2778 3074 3156 3625 Size: 706 322 1049 309 180 296 82 469 Cuts at: 3625 3679 3893 4195 4576 212 Size: 54 214 302 381 2265 Fragments arranged by size: 2265 1049 706 469 381 322 309 302 296 214 180 82 54 BsrBI CCG'CTC Cuts at: 50 1176 2741 3125 4921 4975 6459 6624 50 Size: 1126 1565 384 1796 54 1484 165 55 Fragments arranged by size: 1796 1565 1484 1126 384 165 55 54 BsrDI GCAATG_nn' Cuts at: 1068 1923 2918 2972 4541 1068 Size: 855 995 54 1569 3156 Fragments arranged by size: 3156 1569 995 855 54 BsrFI r'CCGG_y Cuts at: 493 964 1004 1017 1202 2392 2581 2987 3377 Size: 471 40 13 185 1190 189 406 390 Cuts at: 3377 4627 4808 5017 493 Size: 1250 181 209 2105 Fragments arranged by size: 2105 1250 1190 471 406 390 209 189 185 181 40 13 BssSI C'ACGA_G Cuts at: 4900 5258 4900 Size: 358 6271 BstAPI GCAn_nnn'nTGC Cuts at: 1241 1896 3171 3325 4006 1241 Size: 655 1275 154 681 3864 Fragments arranged by size: 3864 1275 681 655 154 BstBI TT'CG_AA Cuts at: 4990 4990 Size: 6629 BstXI CCAn_nnnn'nTGG Cuts at: 1479 2409 2487 2536 3213 3592 1479 Size: 930 78 49 677 379 4516 Fragments arranged by size: 4516 930 677 379 78 49 BstYI r'GATC_y Cuts at: 1 1976 2006 2109 2909 3419 3575 3654 4121 Size: 1975 30 103 800 510 156 79 467 Cuts at: 4121 4144 4479 4725 5737 5823 5835 6181 1 Size: 23 335 246 1012 86 12 346 449 Fragments arranged by size: 1975 1012 800 510 467 449 346 335 246 156 103 86 79 30 23 12 Bsu36I CC'TnA_GG Cuts at: 2080 2416 2080 Size: 336 6293 BtgI C'CryG_G Cuts at: 174 1959 3464 174 Size: 1785 1505 3339 Fragments arranged by size: 3339 1785 1505 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4579 4760 4923 4579 Size: 181 163 6285 Fragments arranged by size: 6285 181 163 BtsI GCAGTG_nn' Cuts at: 959 1271 1306 1609 2235 3038 3085 3872 959 Size: 312 35 303 626 803 47 787 3716 Fragments arranged by size: 3716 803 787 626 312 303 47 35 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 2451 2486 2451 Size: 35 6594 DraI TTT'AAA Cuts at: 3628 3628 Size: 6629 DrdI GACnn_nn'nnGTC Cuts at: 4335 5193 4335 Size: 858 5771 EaeI y'GGCC_r Cuts at: 867 1523 1530 1688 2060 3175 4214 4388 4779 Size: 656 7 158 372 1115 1039 174 391 Cuts at: 4779 4806 6151 867 Size: 27 1345 1345 Fragments arranged by size: 1345 1345 1115 1039 656 391 372 174 158 27 7 EagI C'GGCC_G Cuts at: 4214 4214 Size: 6629 EarI CTCTTCn'nnn_ Cuts at: 2197 4652 4862 2197 Size: 2455 210 3964 Fragments arranged by size: 3964 2455 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 577 1036 1645 3235 4837 5147 5293 6439 577 Size: 459 609 1590 1602 310 146 1146 767 Fragments arranged by size: 1602 1590 1146 767 609 459 310 146 EcoICRI GAG'CTC Cuts at: 3243 3641 3243 Size: 398 6231 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 303 1032 1972 2077 2140 2173 2225 2443 2463 Size: 729 940 105 63 33 52 218 20 Cuts at: 2463 2629 3577 4454 4886 5633 5901 303 Size: 166 948 877 432 747 268 1031 Fragments arranged by size: 1031 948 940 877 747 729 432 268 218 166 105 63 52 33 20 EcoNI CCTnn'n_nnAGG Cuts at: 2122 3070 2122 Size: 948 5681 EcoO109I rG'GnC_Cy Cuts at: 179 201 218 481 899 910 1418 1483 1734 Size: 22 17 263 418 11 508 65 251 Cuts at: 1734 1790 1893 1942 2097 2588 3768 179 Size: 56 103 49 155 491 1180 3040 Fragments arranged by size: 3040 1180 508 491 418 263 251 155 103 65 56 49 22 17 11 EcoRI G'AATT_C Cuts at: 3633 3633 Size: 6629 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1371 4648 1371 Size: 3277 3352 FspI TGC'GCA Cuts at: 885 4410 885 Size: 3525 3104 HaeII r_GCGC'y Cuts at: 513 818 984 1209 1335 1458 1646 2715 2735 Size: 305 166 225 126 123 188 1069 20 Cuts at: 2735 4063 4311 5333 6312 513 Size: 1328 248 1022 979 830 Fragments arranged by size: 1328 1069 1022 979 830 305 248 225 188 166 126 123 20 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 553 585 682 714 1738 1770 2119 2151 4471 Size: 32 97 32 1024 32 349 32 2320 Cuts at: 4471 4501 4503 4533 553 Size: 30 2 30 2649 Fragments arranged by size: 2649 2320 1024 349 97 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 3668 3668 Size: 6629 HindIII A'AGCT_T Cuts at: 2169 2404 2169 Size: 235 6394 KasI G'GCGC_C Cuts at: 1205 4059 4307 1205 Size: 2854 248 3527 Fragments arranged by size: 3527 2854 248 KpnI G_GTAC'C Cuts at: 3649 3649 Size: 6629 MfeI C'AATT_G Cuts at: 1140 1140 Size: 6629 MluI A'CGCG_T Cuts at: 6062 6062 Size: 6629 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 699 2330 3479 5300 5484 699 Size: 1631 1149 1821 184 1844 Fragments arranged by size: 1844 1821 1631 1149 184 MscI TGG'CCA Cuts at: 1525 1532 1690 2062 4390 1525 Size: 7 158 372 2328 3764 Fragments arranged by size: 3764 2328 372 158 7 MslI CAynn'nnrTG Cuts at: 869 922 1397 3469 3590 4618 4745 869 Size: 53 475 2072 121 1028 127 2753 Fragments arranged by size: 2753 2072 1028 475 127 121 53 MspA1I CmG'CkG Cuts at: 429 922 1096 1185 1397 1763 1796 2106 2558 Size: 493 174 89 212 366 33 310 452 Cuts at: 2558 2622 2649 3213 3541 3740 4054 4414 5427 Size: 64 27 564 328 199 314 360 1013 Cuts at: 5427 5672 429 Size: 245 1386 Fragments arranged by size: 1386 1013 564 493 452 366 360 328 314 310 245 212 199 174 89 64 33 27 NaeI GCC'GGC Cuts at: 495 966 4810 495 Size: 471 3844 2314 Fragments arranged by size: 3844 2314 471 NarI GG'CG_CC Cuts at: 1206 4060 4308 1206 Size: 2854 248 3527 Fragments arranged by size: 3527 2854 248 NcoI C'CATG_G Cuts at: 3464 3464 Size: 6629 NdeI CA'TA_TG Cuts at: 1122 1122 Size: 6629 NgoMIV G'CCGG_C Cuts at: 493 964 4808 493 Size: 471 3844 2314 Fragments arranged by size: 3844 2314 471 NspI r_CATG'y Cuts at: 157 501 1082 1321 1434 3682 4182 5089 157 Size: 344 581 239 113 2248 500 907 1697 Fragments arranged by size: 2248 1697 907 581 500 344 239 113 PasI CC'CwG_GG Cuts at: 2576 2576 Size: 6629 PciI A'CATG_T Cuts at: 1078 5085 1078 Size: 4007 2622 PflMI CCAn_nnn'nTGG Cuts at: 196 386 552 1934 2715 3033 196 Size: 190 166 1382 781 318 3792 Fragments arranged by size: 3792 1382 781 318 190 166 PfoI T'CCnGG_A Cuts at: 1420 1883 1972 2792 2834 3140 1420 Size: 463 89 820 42 306 4909 Fragments arranged by size: 4909 820 463 306 89 42 PmeI GTTT'AAAC Cuts at: 3628 3628 Size: 6629 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 403 435 5768 5800 403 Size: 32 5333 32 1232 Fragments arranged by size: 5333 1232 32 32 PpuMI rG'GwC_Cy Cuts at: 201 218 1418 1483 201 Size: 17 1200 65 5347 Fragments arranged by size: 5347 1200 65 17 PspOMI G'GGCC_C Cuts at: 481 1734 1789 481 Size: 1253 55 5321 Fragments arranged by size: 5321 1253 55 PstI C_TGCA'G Cuts at: 428 848 909 1650 2105 2563 2897 3092 3676 Size: 420 61 741 455 458 334 195 584 Cuts at: 3676 4361 428 Size: 685 2696 Fragments arranged by size: 2696 741 685 584 458 455 420 334 195 61 PvuI CG_AT'CG Cuts at: 104 104 Size: 6629 PvuII CAG'CTG Cuts at: 429 1185 2106 2622 3213 4054 4414 429 Size: 756 921 516 591 841 360 2644 Fragments arranged by size: 2644 921 841 756 591 516 360 RsrII CG'GwC_CG Cuts at: 4824 4824 Size: 6629 SacI G_AGCT'C Cuts at: 3245 3643 3245 Size: 398 6231 SalI G'TCGA_C Cuts at: 3666 3666 Size: 6629 SanDI GG'GwC_CC Cuts at: 1418 1483 1418 Size: 65 6564 SapI GCTCTTCn'nnn_ Cuts at: 4652 4862 4652 Size: 210 6419 SbfI CC_TGCA'GG Cuts at: 3676 3676 Size: 6629 ScaI AGT'ACT Cuts at: 6146 6146 Size: 6629 SfcI C'TryA_G Cuts at: 33 339 424 844 905 1646 2101 2559 2893 Size: 306 85 420 61 741 455 458 334 Cuts at: 2893 3088 3672 4357 5350 5541 33 Size: 195 584 685 993 191 1121 Fragments arranged by size: 1121 993 741 685 584 458 455 420 334 306 195 191 85 61 SfiI GGCCn_nnn'nGGCC Cuts at: 2587 2857 2587 Size: 270 6359 SfoI GGC'GCC Cuts at: 1207 4061 4309 1207 Size: 2854 248 3527 Fragments arranged by size: 3527 2854 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6629 SmaI CCC'GGG Cuts at: 1211 1739 3651 1211 Size: 528 1912 4189 Fragments arranged by size: 4189 1912 528 SmlI C'TyrA_G Cuts at: 756 3784 4699 5191 5453 756 Size: 3028 915 492 262 1932 Fragments arranged by size: 3028 1932 915 492 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6629 SphI G_CATG'C Cuts at: 157 501 3682 4182 157 Size: 344 3181 500 2604 Fragments arranged by size: 3181 2604 500 344 SrfI GCCC'GGGC Cuts at: 1739 1739 Size: 6629 StuI AGG'CCT Cuts at: 645 645 Size: 6629 StyI C'CwwG_G Cuts at: 3464 3763 4117 3464 Size: 299 354 5976 Fragments arranged by size: 5976 354 299 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 292 903 2466 3205 3391 4212 4345 4804 5013 Size: 611 1563 739 186 821 133 459 209 Cuts at: 5013 292 Size: 1908 Fragments arranged by size: 1908 1563 821 739 611 459 209 186 133 TatI w'GTAC_w Cuts at: 6144 6144 Size: 6629 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 607 639 1420 1452 3411 3443 6146 6178 607 Size: 32 781 32 1959 32 2703 32 1058 Fragments arranged by size: 2703 1959 1058 781 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 2133 4426 2133 Size: 2293 4336 XbaI T'CTAG_A Cuts at: 3660 3660 Size: 6629 XcmI CCAnnnn_n'nnnnTGG Cuts at: 1120 2943 3471 4124 1120 Size: 1823 528 653 3625 Fragments arranged by size: 3625 1823 653 528 XmaI C'CCGG_G Cuts at: 1209 1737 3649 1209 Size: 528 1912 4189 Fragments arranged by size: 4189 1912 528 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AfeI AflIII AgeI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PspOMI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SfcI SfiI SfoI SgfI SmaI SmlI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AatII AflII AhdI AloI AscI AvrII BaeI BfrBI BmtI BsiWI BsrGI BssHII BstEII BstZ17I ClaI DraIII EcoRV FseI FspAI HpaI NheI NotI NruI NsiI PacI PmlI PshAI PsiI PspXI PsrI SacII SexAI SgrAI SnaBI SspI SwaI XhoI XmnI ZraI