Result of FASTA (ccds) for
pF1KB4828
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4828, 291 aa
1>>>pF1KB4828 291 - 291 aa - 291 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8568+/-0.000699; mu= 14.1590+/- 0.043
mean_var=90.6230+/-17.742, 0's: 0 Z-trim(111.9): 37 B-trim: 0 in 0/52
Lambda= 0.134727
statistics sampled from 12746 (12782) to 12746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.393), width: 16
Scan time: 1.550
The best scores are: opt bits E(32554)
CCDS7213.1 MARCH8 gene_id:220972|Hs108|chr10 ( 291) 2010 400.0 1e-111
CCDS60519.1 MARCH8 gene_id:220972|Hs108|chr10 ( 573) 1536 308.1 9.7e-84
CCDS54814.1 MARCH1 gene_id:55016|Hs108|chr4 ( 289) 1246 251.5 5.3e-67
CCDS3806.1 MARCH1 gene_id:55016|Hs108|chr4 ( 272) 1190 240.6 9.5e-64
CCDS12202.1 MARCH2 gene_id:51257|Hs108|chr19 ( 246) 322 71.9 5.4e-13
CCDS4141.1 MARCH3 gene_id:115123|Hs108|chr5 ( 253) 293 66.2 2.7e-11
>>CCDS7213.1 MARCH8 gene_id:220972|Hs108|chr10 (291 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2118.9 bits: 400.0 E(32554): 1e-111
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
250 260 270 280 290
>>CCDS60519.1 MARCH8 gene_id:220972|Hs108|chr10 (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1616.9 bits: 308.1 E(32554): 9.7e-84
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
CCDS60 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
CCDS60 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 556.9 bits: 112.0 E(32554): 1.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
CCDS60 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
CCDS60 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
>>CCDS54814.1 MARCH1 gene_id:55016|Hs108|chr4 (289 aa)
initn: 1159 init1: 1159 opt: 1246 Z-score: 1316.4 bits: 251.5 E(32554): 5.3e-67
Smith-Waterman score: 1246; 71.2% identity (86.0% similar) in 257 aa overlap (35-291:38-289)
10 20 30 40 50 60
pF1KB4 LHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPV
:::. :. :.:::::::.:: ...::
CCDS54 IARNPHRIPNNTRTPEISGDLADASQTSTLNEKSPGRSASRSSNISKASSPTTGTAP---
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE
: :: :. ::.::::::::::::.::::::::.:::.:.::::.::.::::::::::::
CCDS54 RSQSRLSVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEI
::::.:::::::::::::::::::.::::::.::::::::::::::::::::::::::::
CCDS54 LCKYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 KQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPET
:::. .:.::::::::::::::::::::.:::::::::::::.:::::::::.:::::.:
CCDS54 KQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDT
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 SKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
.:: .::. . : . : . . .:... : :.. :
CCDS54 AKK--LEKNFSCNVNTDIKDAVVVPVPQTGANSLPSAEGGPPEVVSV
250 260 270 280
>>CCDS3806.1 MARCH1 gene_id:55016|Hs108|chr4 (272 aa)
initn: 1159 init1: 1159 opt: 1190 Z-score: 1258.0 bits: 240.6 E(32554): 9.5e-64
Smith-Waterman score: 1190; 67.8% identity (85.5% similar) in 255 aa overlap (41-291:23-272)
20 30 40 50 60
pF1KB4 IPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNIS----KAGSPPSASAPAPVSS
.........: .:.:: ...:: :
CCDS38 MTSSHVCCNFLNMWKKSKISTMYYLNQDAKLSNLFLQASSPTTGTAP---RS
10 20 30 40
70 80 90 100 110 120
pF1KB4 FSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC
:: :. ::.::::::::::::.::::::::.:::.:.::::.::.::::::::::::::
CCDS38 QSRLSVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 KYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQ
::.:::::::::::::::::::.::::::.::::::::::::::::::::::::::::::
CCDS38 KYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSK
:. .:.::::::::::::::::::::.:::::::::::::.:::::::::.:::::.:.:
CCDS38 GNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDTAK
170 180 190 200 210 220
250 260 270 280 290
pF1KB4 KNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
: .::. . : . : . . .:... : :.. :
CCDS38 K--LEKNFSCNVNTDIKDAVVVPVPQTGANSLPSAEGGPPEVVSV
230 240 250 260 270
>>CCDS12202.1 MARCH2 gene_id:51257|Hs108|chr19 (246 aa)
initn: 274 init1: 223 opt: 322 Z-score: 346.8 bits: 71.9 E(32554): 5.4e-13
Smith-Waterman score: 322; 29.9% identity (62.0% similar) in 184 aa overlap (64-243:48-225)
40 50 60 70 80 90
pF1KB4 QNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRICHCEGDDESPL
.:. :. :::. .::::: :: . :
CCDS12 GSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSDGPFCRICH-EGANGECL
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB4 ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERR
..:: :::.: ::..::..:..::.: ::::. :: .: . .:: .: : .:.:
CCDS12 LSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKDPGPRTEKR
80 90 100 110 120 130
160 170 180 190 200 210
pF1KB4 KIMCSVTFHVIAITCVVWSLYVLIDRTAEEIK---QGQATGILEWPFWTKLVVVAIGFTG
. :... .. .. : .. . . .... : .:.:.. . : .. . .:
CCDS12 TLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLI--ALTIALFTIYVLWT-
140 150 160 170 180 190
220 230 240 250 260
pF1KB4 GLLFMYVQCKVYVQLWKRLKAYNRV-IYVQNCPETSKKNIFEKSPLTEPNFENKHGYGIC
:. . .:..: . :.. . :. : . ::
CCDS12 -LVSFRYHCQLYSE-WRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV
200 210 220 230 240
270 280 290
pF1KB4 HSDTNSSCCTEPEDTGAEIIHV
>>CCDS4141.1 MARCH3 gene_id:115123|Hs108|chr5 (253 aa)
initn: 266 init1: 229 opt: 293 Z-score: 316.2 bits: 66.2 E(32554): 2.7e-11
Smith-Waterman score: 293; 31.0% identity (62.0% similar) in 187 aa overlap (57-236:45-222)
30 40 50 60 70 80
pF1KB4 KEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPS---SQDICRIC
::. .:. :: : : .. .::::
CCDS41 DCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRIC
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
: ::... :..::.:::.: .:..::..:..::.: ::::...: .: : .:: .:
CCDS41 H-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWL
80 90 100 110 120 130
150 160 170 180 190
pF1KB4 KLQMTSSERRKIMCS-VTFHVIAITCVV--W-SLYVLIDRTAEEIKQGQATGILEWPFWT
. . :.: .. . : : :. .. : : .:. . .:.:.. . .
CCDS41 RNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL-EAVGLIA--LTV
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB4 KLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPN
: .. . .: :. . .:..: . :.: . .:::
CCDS41 ALFTIYLFWT--LVSFRYHCRLYNE-WRRTN--QRVILLIPKSVNVPSNQPSLLGLHSVK
200 210 220 230 240
260 270 280 290
pF1KB4 FENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
CCDS41 RNSKETVV
250
291 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:02:53 2016 done: Sat Nov 5 06:02:54 2016
Total Scan time: 1.550 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]