Result of FASTA (omim) for
pF1KB4895
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4895, 449 aa
1>>>pF1KB4895 449 - 449 aa - 449 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7965+/-0.000423; mu= 17.5837+/- 0.027
mean_var=145.7157+/-31.988, 0's: 0 Z-trim(115.2): 134 B-trim: 1454 in 1/49
Lambda= 0.106248
statistics sampled from 25339 (25485) to 25339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.299), width: 16
Scan time: 7.260
The best scores are: opt bits E(85289)
NP_001027565 (OMIM: 300610,300986) heterogeneous n ( 449) 3075 483.4 5.1e-136
NP_062543 (OMIM: 300610,300986) heterogeneous nucl ( 449) 3075 483.4 5.1e-136
XP_016864905 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2985 469.6 7.3e-132
NP_001244222 (OMIM: 601035) heterogeneous nuclear ( 449) 2985 469.6 7.3e-132
XP_016864906 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2985 469.6 7.3e-132
NP_005511 (OMIM: 601035) heterogeneous nuclear rib ( 449) 2985 469.6 7.3e-132
XP_016864904 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2985 469.6 7.3e-132
XP_011532844 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2907 457.7 3e-128
XP_011532847 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2907 457.7 3e-128
XP_011532846 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2907 457.7 3e-128
XP_005265952 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2907 457.7 3e-128
XP_011532848 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2907 457.7 3e-128
XP_005265953 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2907 457.7 3e-128
XP_011532849 (OMIM: 601035) PREDICTED: heterogeneo ( 462) 2662 420.1 6e-117
XP_016864907 (OMIM: 601035) PREDICTED: heterogeneo ( 439) 2648 418.0 2.6e-116
XP_016864903 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 2544 402.0 1.6e-111
XP_006714925 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 2544 402.0 1.6e-111
XP_016864908 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 2536 400.8 3.7e-111
XP_006714926 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 2536 400.8 3.7e-111
NP_001091675 (OMIM: 601037) heterogeneous nuclear ( 415) 2073 329.8 8.4e-90
NP_001091674 (OMIM: 601037) heterogeneous nuclear ( 415) 2073 329.8 8.4e-90
NP_001091677 (OMIM: 601037) heterogeneous nuclear ( 415) 2073 329.8 8.4e-90
NP_001091678 (OMIM: 601037) heterogeneous nuclear ( 415) 2073 329.8 8.4e-90
NP_001091676 (OMIM: 601037) heterogeneous nuclear ( 415) 2073 329.8 8.4e-90
NP_004957 (OMIM: 601037) heterogeneous nuclear rib ( 415) 2073 329.8 8.4e-90
XP_016864911 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 1682 269.6 6.7e-72
XP_016864910 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 1682 269.6 6.7e-72
XP_005265959 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 1604 257.7 2.8e-68
XP_005265958 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 1604 257.7 2.8e-68
XP_016871657 (OMIM: 602324) PREDICTED: heterogeneo ( 346) 1420 229.6 1e-59
NP_001309363 (OMIM: 602324) heterogeneous nuclear ( 346) 1420 229.6 1e-59
NP_001309365 (OMIM: 602324) heterogeneous nuclear ( 346) 1420 229.6 1e-59
NP_036339 (OMIM: 602324) heterogeneous nuclear rib ( 346) 1420 229.6 1e-59
NP_001309366 (OMIM: 602324) heterogeneous nuclear ( 346) 1420 229.6 1e-59
NP_001309372 (OMIM: 602324) heterogeneous nuclear ( 340) 1398 226.2 1e-58
NP_001309371 (OMIM: 602324) heterogeneous nuclear ( 340) 1398 226.2 1e-58
XP_016864913 (OMIM: 601035) PREDICTED: heterogeneo ( 266) 1387 224.4 2.9e-58
XP_016864912 (OMIM: 601035) PREDICTED: heterogeneo ( 238) 1345 217.9 2.3e-56
XP_016864909 (OMIM: 601035) PREDICTED: heterogeneo ( 251) 1241 202.0 1.5e-51
XP_016864914 (OMIM: 601035) PREDICTED: heterogeneo ( 228) 1233 200.7 3.3e-51
NP_001309369 (OMIM: 602324) heterogeneous nuclear ( 331) 762 128.7 2.3e-29
NP_067676 (OMIM: 602324) heterogeneous nuclear rib ( 331) 762 128.7 2.3e-29
NP_001309367 (OMIM: 602324) heterogeneous nuclear ( 331) 762 128.7 2.3e-29
NP_001309370 (OMIM: 602324) heterogeneous nuclear ( 331) 762 128.7 2.3e-29
NP_001309368 (OMIM: 602324) heterogeneous nuclear ( 331) 762 128.7 2.3e-29
NP_001309376 (OMIM: 602324) heterogeneous nuclear ( 215) 728 123.3 6.5e-28
NP_001309374 (OMIM: 602324) heterogeneous nuclear ( 215) 728 123.3 6.5e-28
NP_001309378 (OMIM: 602324) heterogeneous nuclear ( 215) 728 123.3 6.5e-28
NP_001309377 (OMIM: 602324) heterogeneous nuclear ( 215) 728 123.3 6.5e-28
XP_016871658 (OMIM: 602324) PREDICTED: heterogeneo ( 215) 728 123.3 6.5e-28
>>NP_001027565 (OMIM: 300610,300986) heterogeneous nucle (449 aa)
initn: 3075 init1: 3075 opt: 3075 Z-score: 2562.9 bits: 483.4 E(85289): 5.1e-136
Smith-Waterman score: 3075; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::::::::
NP_001 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
430 440
>>NP_062543 (OMIM: 300610,300986) heterogeneous nuclear (449 aa)
initn: 3075 init1: 3075 opt: 3075 Z-score: 2562.9 bits: 483.4 E(85289): 5.1e-136
Smith-Waterman score: 3075; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::::::::
NP_062 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
430 440
>>XP_016864905 (OMIM: 601035) PREDICTED: heterogeneous n (449 aa)
initn: 3493 init1: 2985 opt: 2985 Z-score: 2488.3 bits: 469.6 E(85289): 7.3e-132
Smith-Waterman score: 2985; 96.2% identity (99.6% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::.:::.:
XP_016 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>NP_001244222 (OMIM: 601035) heterogeneous nuclear ribo (449 aa)
initn: 3493 init1: 2985 opt: 2985 Z-score: 2488.3 bits: 469.6 E(85289): 7.3e-132
Smith-Waterman score: 2985; 96.2% identity (99.6% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
NP_001 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_001 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_001 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
NP_001 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::.:::.:
NP_001 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>XP_016864906 (OMIM: 601035) PREDICTED: heterogeneous n (449 aa)
initn: 3493 init1: 2985 opt: 2985 Z-score: 2488.3 bits: 469.6 E(85289): 7.3e-132
Smith-Waterman score: 2985; 96.2% identity (99.6% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::.:::.:
XP_016 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>NP_005511 (OMIM: 601035) heterogeneous nuclear ribonuc (449 aa)
initn: 3493 init1: 2985 opt: 2985 Z-score: 2488.3 bits: 469.6 E(85289): 7.3e-132
Smith-Waterman score: 2985; 96.2% identity (99.6% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
NP_005 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_005 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_005 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
NP_005 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
NP_005 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
NP_005 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::.:::.:
NP_005 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>XP_016864904 (OMIM: 601035) PREDICTED: heterogeneous n (449 aa)
initn: 3493 init1: 2985 opt: 2985 Z-score: 2488.3 bits: 469.6 E(85289): 7.3e-132
Smith-Waterman score: 2985; 96.2% identity (99.6% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
:::::::::::::::::::::::.:::.:
XP_016 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>XP_011532844 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3417 init1: 2907 opt: 2907 Z-score: 2423.5 bits: 457.7 E(85289): 3e-128
Smith-Waterman score: 2907; 94.8% identity (98.2% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
::::::::::::: . ::: :.:
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_011532847 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3417 init1: 2907 opt: 2907 Z-score: 2423.5 bits: 457.7 E(85289): 3e-128
Smith-Waterman score: 2907; 94.8% identity (98.2% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
::::::::::::: . ::: :.:
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_011532846 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3417 init1: 2907 opt: 2907 Z-score: 2423.5 bits: 457.7 E(85289): 3e-128
Smith-Waterman score: 2907; 94.8% identity (98.2% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB4 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
:::.::: :::::::::::::::::::.:::::::::::..:::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::.::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
::::::.::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
::::::::::::::.::::::::::::::::::::::::::::::.::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::.:::::.: :::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440
pF1KB4 GGGYGGQSSMSGYDQVLQENSSDYQSNLA
::::::::::::: . ::: :.:
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
449 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:34:49 2016 done: Thu Nov 3 15:34:50 2016
Total Scan time: 7.260 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]