FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4929, 198 aa
1>>>pF1KB4929 198 - 198 aa - 198 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6037+/-0.000435; mu= 17.5934+/- 0.027
mean_var=75.5560+/-15.633, 0's: 0 Z-trim(112.7): 167 B-trim: 1396 in 2/47
Lambda= 0.147550
statistics sampled from 21558 (21783) to 21558 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.255), width: 16
Scan time: 5.620
The best scores are: opt bits E(85289)
NP_057187 (OMIM: 246700,607690) GTP-binding protei ( 198) 1312 288.4 5e-78
NP_001028675 (OMIM: 246700,607690) GTP-binding pro ( 198) 1312 288.4 5e-78
XP_016865010 (OMIM: 246700,607690) PREDICTED: GTP- ( 198) 1312 288.4 5e-78
NP_064535 (OMIM: 607691) GTP-binding protein SAR1a ( 198) 1215 267.8 8.3e-72
NP_001136120 (OMIM: 607691) GTP-binding protein SA ( 198) 1215 267.8 8.3e-72
NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 ( 175) 320 77.2 1.7e-14
NP_001658 (OMIM: 601175) ADP-ribosylation factor-l ( 184) 313 75.7 5e-14
NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 ( 181) 311 75.3 6.6e-14
NP_001019398 (OMIM: 103180) ADP-ribosylation facto ( 181) 311 75.3 6.6e-14
NP_001019399 (OMIM: 103180) ADP-ribosylation facto ( 181) 311 75.3 6.6e-14
NP_001019397 (OMIM: 103180) ADP-ribosylation facto ( 181) 311 75.3 6.6e-14
XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 181) 307 74.4 1.2e-13
NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 ( 181) 307 74.4 1.2e-13
NP_079323 (OMIM: 614439) ADP-ribosylation factor-l ( 192) 307 74.5 1.2e-13
NP_612459 (OMIM: 609351) ADP-ribosylation factor-l ( 196) 306 74.3 1.5e-13
XP_005266310 (OMIM: 609351) PREDICTED: ADP-ribosyl ( 196) 306 74.3 1.5e-13
XP_016864933 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 569) 306 74.8 3e-13
NP_150230 (OMIM: 601747) E3 ubiquitin-protein liga ( 569) 306 74.8 3e-13
NP_001310443 (OMIM: 209900,268000,600151,608845,61 ( 159) 298 72.5 4.1e-13
XP_016862801 (OMIM: 209900,268000,600151,608845,61 ( 159) 298 72.5 4.1e-13
NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 ( 180) 298 72.5 4.5e-13
NP_816931 (OMIM: 209900,268000,600151,608845,61357 ( 186) 298 72.5 4.6e-13
NP_115522 (OMIM: 209900,268000,600151,608845,61357 ( 186) 298 72.5 4.6e-13
NP_001265222 (OMIM: 209900,268000,600151,608845,61 ( 186) 298 72.5 4.6e-13
XP_016862800 (OMIM: 209900,268000,600151,608845,61 ( 186) 298 72.5 4.6e-13
NP_001310442 (OMIM: 209900,268000,600151,608845,61 ( 193) 298 72.6 4.7e-13
NP_001652 (OMIM: 600732) ADP-ribosylation factor-l ( 201) 296 72.1 6.5e-13
XP_011523084 (OMIM: 600732) PREDICTED: ADP-ribosyl ( 201) 296 72.1 6.5e-13
NP_150231 (OMIM: 601747) E3 ubiquitin-protein liga ( 546) 300 73.5 7.1e-13
NP_060654 (OMIM: 616596) ADP-ribosylation factor-l ( 186) 294 71.7 8.3e-13
XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 398) 297 72.7 8.9e-13
NP_001647 (OMIM: 601747) E3 ubiquitin-protein liga ( 574) 297 72.8 1.1e-12
NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 ( 180) 284 69.5 3.5e-12
NP_620150 (OMIM: 616597) ADP-ribosylation factor-l ( 186) 283 69.3 4.2e-12
XP_016871749 (OMIM: 604695) PREDICTED: ADP-ribosyl ( 182) 276 67.8 1.2e-11
NP_004302 (OMIM: 604695) ADP-ribosylation factor-l ( 182) 276 67.8 1.2e-11
XP_016856722 (OMIM: 103180) PREDICTED: ADP-ribosyl ( 212) 276 67.9 1.3e-11
XP_006719454 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 137) 273 67.1 1.5e-11
NP_001167621 (OMIM: 608922,612291) ADP-ribosylatio ( 428) 278 68.7 1.5e-11
NP_878899 (OMIM: 608922,612291) ADP-ribosylation f ( 428) 278 68.7 1.5e-11
XP_011510837 (OMIM: 608922,612291) PREDICTED: ADP- ( 403) 272 67.4 3.6e-11
NP_001168 (OMIM: 603425) ADP-ribosylation factor-l ( 181) 266 65.7 5e-11
NP_001032241 (OMIM: 604786) ADP-ribosylation facto ( 200) 261 64.7 1.1e-10
NP_005729 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 261 64.7 1.1e-10
NP_997625 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 261 64.7 1.1e-10
NP_001182325 (OMIM: 604786) ADP-ribosylation facto ( 200) 261 64.7 1.1e-10
NP_005728 (OMIM: 604787) ADP-ribosylation factor-l ( 192) 258 64.0 1.7e-10
NP_001269360 (OMIM: 604787) ADP-ribosylation facto ( 201) 258 64.1 1.8e-10
NP_036229 (OMIM: 608960) ADP-ribosylation factor-l ( 179) 250 62.3 5.3e-10
NP_848930 (OMIM: 608909) ADP-ribosylation factor-l ( 179) 248 61.9 7.1e-10
>>NP_057187 (OMIM: 246700,607690) GTP-binding protein SA (198 aa)
initn: 1312 init1: 1312 opt: 1312 Z-score: 1521.8 bits: 288.4 E(85289): 5e-78
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
130 140 150 160 170 180
190
pF1KB4 LKRQGYGEGFRWMAQYID
::::::::::::::::::
NP_057 LKRQGYGEGFRWMAQYID
190
>>NP_001028675 (OMIM: 246700,607690) GTP-binding protein (198 aa)
initn: 1312 init1: 1312 opt: 1312 Z-score: 1521.8 bits: 288.4 E(85289): 5e-78
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
130 140 150 160 170 180
190
pF1KB4 LKRQGYGEGFRWMAQYID
::::::::::::::::::
NP_001 LKRQGYGEGFRWMAQYID
190
>>XP_016865010 (OMIM: 246700,607690) PREDICTED: GTP-bind (198 aa)
initn: 1312 init1: 1312 opt: 1312 Z-score: 1521.8 bits: 288.4 E(85289): 5e-78
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
130 140 150 160 170 180
190
pF1KB4 LKRQGYGEGFRWMAQYID
::::::::::::::::::
XP_016 LKRQGYGEGFRWMAQYID
190
>>NP_064535 (OMIM: 607691) GTP-binding protein SAR1a [Ho (198 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1410.2 bits: 267.8 E(85289): 8.3e-72
Smith-Waterman score: 1215; 89.9% identity (98.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
:::::.:::.::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_064 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
::::::::::::::::::: ::::::::::::::::::::::::: ::.::: ::..:::
NP_064 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
::::.::::::::::::: .:::::.:::.:::::::::::...::::::::.:::::::
NP_064 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
130 140 150 160 170 180
190
pF1KB4 LKRQGYGEGFRWMAQYID
::::::::::::..::::
NP_064 LKRQGYGEGFRWLSQYID
190
>>NP_001136120 (OMIM: 607691) GTP-binding protein SAR1a (198 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1410.2 bits: 267.8 E(85289): 8.3e-72
Smith-Waterman score: 1215; 89.9% identity (98.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
:::::.:::.::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
::::::::::::::::::: ::::::::::::::::::::::::: ::.::: ::..:::
NP_001 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
::::.::::::::::::: .:::::.:::.:::::::::::...::::::::.:::::::
NP_001 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
130 140 150 160 170 180
190
pF1KB4 LKRQGYGEGFRWMAQYID
::::::::::::..::::
NP_001 LKRQGYGEGFRWLSQYID
190
>>NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 [Ho (175 aa)
initn: 318 init1: 318 opt: 320 Z-score: 381.2 bits: 77.2 E(85289): 1.7e-14
Smith-Waterman score: 320; 38.3% identity (74.4% similar) in 133 aa overlap (24-153:12-141)
10 20 30 40 50
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTL
: ....:::: :::::.:. :: ::: : ::.
NP_001 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLK---LGQSVTTIPTV
10 20 30 40
60 70 80 90 100 110
pF1KB4 HPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDS
. : .: .. :...:.::. . : .:..: . .:..:.:::::..:. :...::
NP_001 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 LMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFM
...:. . .. :::..:: : :.:.. ....: .::
NP_001 IINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG
110 120 130 140 150 160
180 190
pF1KB4 CSVLKRQGYGEGFRWMAQYID
NP_001 LTWLTSNYKS
170
>>NP_001658 (OMIM: 601175) ADP-ribosylation factor-like (184 aa)
initn: 293 init1: 293 opt: 313 Z-score: 372.9 bits: 75.7 E(85289): 5e-14
Smith-Waterman score: 313; 34.3% identity (72.0% similar) in 143 aa overlap (11-153:2-144)
10 20 30 40 50 60
pF1KB4 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
:. ..:. . .. .:..::::::::::.:. .. . . ::: .
NP_001 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFN
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
. : :. .. .:.::. . : :.::. . .:....:: ::..:. . ..::.::..
NP_001 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
.: .:.. .::..:: : : :.: . .::.. :
NP_001 EERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDW
120 130 140 150 160 170
190
pF1KB4 LKRQGYGEGFRWMAQYID
NP_001 LLDDISSRIFTAD
180
>>NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 [Ho (181 aa)
initn: 301 init1: 301 opt: 311 Z-score: 370.7 bits: 75.3 E(85289): 6.6e-14
Smith-Waterman score: 312; 29.8% identity (66.3% similar) in 181 aa overlap (18-197:9-177)
10 20 30 40 50
pF1KB4 MSFIFDWIYSGFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP
: ::. :: .....::: :::::.:. :: .. .::.
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 TSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLM
. : . ...::..:.::. . : .:..:. .:..:.:: :.::. :..::: ..
NP_001 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 TDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCS
... . .. .:...:: : :.:.. .. . .::. ::.. : . :.
NP_001 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRHRNWYIQAT--CA
120 130 140 150 160
180 190
pF1KB4 VLKRQGYGEGFRWMAQYID
. . .: ::. :... .
NP_001 T-SGDGLYEGLDWLSNQLRNQK
170 180
>>NP_001019398 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 301 init1: 301 opt: 311 Z-score: 370.7 bits: 75.3 E(85289): 6.6e-14
Smith-Waterman score: 312; 29.8% identity (66.3% similar) in 181 aa overlap (18-197:9-177)
10 20 30 40 50
pF1KB4 MSFIFDWIYSGFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP
: ::. :: .....::: :::::.:. :: .. .::.
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 TSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLM
. : . ...::..:.::. . : .:..:. .:..:.:: :.::. :..::: ..
NP_001 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 TDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCS
... . .. .:...:: : :.:.. .. . .::. ::.. : . :.
NP_001 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRHRNWYIQAT--CA
120 130 140 150 160
180 190
pF1KB4 VLKRQGYGEGFRWMAQYID
. . .: ::. :... .
NP_001 T-SGDGLYEGLDWLSNQLRNQK
170 180
>>NP_001019399 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 301 init1: 301 opt: 311 Z-score: 370.7 bits: 75.3 E(85289): 6.6e-14
Smith-Waterman score: 312; 29.8% identity (66.3% similar) in 181 aa overlap (18-197:9-177)
10 20 30 40 50
pF1KB4 MSFIFDWIYSGFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP
: ::. :: .....::: :::::.:. :: .. .::.
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 TSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLM
. : . ...::..:.::. . : .:..:. .:..:.:: :.::. :..::: ..
NP_001 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 TDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCS
... . .. .:...:: : :.:.. .. . .::. ::.. : . :.
NP_001 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRHRNWYIQAT--CA
120 130 140 150 160
180 190
pF1KB4 VLKRQGYGEGFRWMAQYID
. . .: ::. :... .
NP_001 T-SGDGLYEGLDWLSNQLRNQK
170 180
198 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:07:29 2016 done: Sat Nov 5 06:07:30 2016
Total Scan time: 5.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]