Result of FASTA (ccds) for
pF1KB4940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4940, 479 aa
1>>>pF1KB4940 479 - 479 aa - 479 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8312+/-0.000955; mu= -5.4583+/- 0.057
mean_var=423.4430+/-92.301, 0's: 0 Z-trim(117.4): 667 B-trim: 1064 in 1/54
Lambda= 0.062327
statistics sampled from 17370 (18168) to 17370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.558), width: 16
Scan time: 4.280
The best scores are: opt bits E(32554)
CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9 ( 479) 3406 320.2 3e-87
CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19 ( 355) 823 87.8 2e-17
CCDS12285.1 KLF1 gene_id:10661|Hs108|chr19 ( 362) 684 75.3 1.2e-13
CCDS3444.1 KLF3 gene_id:51274|Hs108|chr4 ( 345) 582 66.1 6.6e-11
>>CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9 (479 aa)
initn: 3406 init1: 3406 opt: 3406 Z-score: 1679.9 bits: 320.2 E(32554): 3e-87
Smith-Waterman score: 3406; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KB4 MRQPPGESDMAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMKRLPPVLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MRQPPGESDMAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMKRLPPVLPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RPYDLAAATVATDLESGGAGAACGGSNLAPLPRRETEEFNDLLDLDFILSNSLTHPPESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RPYDLAAATVATDLESGGAGAACGGSNLAPLPRRETEEFNDLLDLDFILSNSLTHPPESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AATVSSSASASSSSSPSSSGPASAPSTCSFTYPIRAGNDPGVAPGGTGGGLLYGRESAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AATVSSSASASSSSSPSSSGPASAPSTCSFTYPIRAGNDPGVAPGGTGGGLLYGRESAPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PTAPFNLADINDVSPSGGFVAELLRPELDPVYIPPQQPQPPGGGLMGKFVLKASLSAPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PTAPFNLADINDVSPSGGFVAELLRPELDPVYIPPQQPQPPGGGLMGKFVLKASLSAPGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 EYGSPSVISVSKGSPDGSHPVVVAPYNGGPPRTCPKIKQEAVSSCTHLGAGPPLSNGHRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EYGSPSVISVSKGSPDGSHPVVVAPYNGGPPRTCPKIKQEAVSSCTHLGAGPPLSNGHRP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 AAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPPGFHPHPGPNYPSFLPDQMQPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPPGFHPHPGPNYPSFLPDQMQPQV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 PPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTH
370 380 390 400 410 420
430 440 450 460 470
pF1KB4 TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF
430 440 450 460 470
>>CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19 (355 aa)
initn: 866 init1: 729 opt: 823 Z-score: 426.2 bits: 87.8 E(32554): 2e-17
Smith-Waterman score: 892; 44.7% identity (58.7% similar) in 380 aa overlap (118-478:5-354)
90 100 110 120 130 140
pF1KB4 LAPLPRRETEEFNDLLDLDFILSNSLTHPPESVAATVSSSASASSSSSPSSSGPASAPST
: . . :. :: . . : . : .
CCDS12 MALSEPILPSFSTFASPCRERGLQERWPRAEPES
10 20 30
150 160 170 180 190 200
pF1KB4 CSFTYPIRAGNDPGVAPGGTGGGLLYGRESAPPPTAP-FNLADIND----VSPSGGFVAE
. . . : .. : : : . : ::: : : . . .:.::.:.:
CCDS12 GGTDDDLNSVLDFILSMGLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB4 LLRPELDPVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVV
::::::: : : .: :.:. :. :: .... ::.
CCDS12 LLRPELD---------APLGPALHGRFL----LAPPGR------LVKAEPPEADGGGGYG
100 110 120 130
270 280 290 300 310
pF1KB4 VAPYNGGPPRTCPKIKQEAV----SSCTHLGAGPPLSNGHRPAAHDFP-LGRQLPSRTTP
:: :: .:.:.. .:: . :: .:. : : : :. . :.: :
CCDS12 CAPGLTRGPRG---LKREGAPGPAASCMR---GP---GGRPPPPPDTPPLSPDGPARL-P
140 150 160 170 180
320 330 340 350 360
pF1KB4 TLGLEEVLSSRDCHPALPLP-PGFHPHPGPNYPSF-LPDQMQPQV------PPLHYQELM
. : . . :.. : ::.: : : :.: : :. . :: :
CCDS12 APGPRASFPPPFGGPGFGAPGPGLHYAP-PAPPAFGLFDDAAAAAAALGLAPPAARGLLT
190 200 210 220 230 240
370 380 390 400 410 420
pF1KB4 PPGSCMPE-EPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC
::.: . : :::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS12 PPASPLELLEAKPKRGRRSWPRKRTATHTCSYAGCGKTYTKSSHLKAHLRTHTGEKPYHC
250 260 270 280 290 300
430 440 450 460 470
pF1KB4 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF
.:::::::::::::::::::::::::::::. ::::::::::::::::::
CCDS12 NWDGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHMKRHM
310 320 330 340 350
>>CCDS12285.1 KLF1 gene_id:10661|Hs108|chr19 (362 aa)
initn: 815 init1: 633 opt: 684 Z-score: 358.6 bits: 75.3 E(32554): 1.2e-13
Smith-Waterman score: 687; 47.7% identity (61.5% similar) in 262 aa overlap (239-479:114-362)
210 220 230 240 250 260
pF1KB4 DPVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGS---HPVVVAP
:. :.:.... :: : : .:.. :
CCDS12 GPEPGGAPQTCALAPSEASGAQYPPPPETLGAYAGGPGLVAGLLGSEDHSGWVRPALRAR
90 100 110 120 130 140
270 280 290 300 310
pF1KB4 YNG---GP---PRTCPKIKQEAVSSCTHLGAGPPLSNGHRPAAHDFPLGRQLPSRTTPTL
:: : :. : :.. .. : : :.:. : . : ..:. .
CCDS12 APDAFVGPALAPAPAPEPKALALQP-VYPGPGAGSSGGYFPRT-----GLSVPAASGAPY
150 160 170 180 190
320 330 340 350 360
pF1KB4 GLEEVLSSRDCHPAL-PLPP---------GFH-PHPGP-NYPSFLPDQMQPQVPPLHYQE
:: ::. .::. : : :.. : ::: . :::: :
CCDS12 GL---LSG---YPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLGPGTVGTGLGGT
200 210 220 230 240 250
370 380 390 400 410 420
pF1KB4 LMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH
:: . : ::::::: ::: :.::: . ::::.::::::::::::::::::::
CCDS12 AEDPG-VIAETAPSKRGRRSWARKRQAAHTCAHPGCGKSYTKSSHLKAHLRTHTGEKPYA
260 270 280 290 300 310
430 440 450 460 470
pF1KB4 CDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF
: :.::::.::::::::::::::::.:::.:: : ::::::::::::::::.
CCDS12 CTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKRHL
320 330 340 350 360
>>CCDS3444.1 KLF3 gene_id:51274|Hs108|chr4 (345 aa)
initn: 547 init1: 525 opt: 582 Z-score: 309.3 bits: 66.1 E(32554): 6.6e-11
Smith-Waterman score: 591; 38.7% identity (58.6% similar) in 292 aa overlap (207-478:58-342)
180 190 200 210 220 230
pF1KB4 SAPPPTAPFNLADINDVSPSGGFVAELLRPELDPVYIP-PQQPQPPGGGLMG---KFVLK
...:: . .. .::..: :: .
CCDS34 SMKPNKYGVIYSTPLPEKFFQTPEGLSHGIQMEPVDLTVNKRSSPPSAGNSPSSLKFPSS
30 40 50 60 70 80
240 250 260 270 280 290
pF1KB4 ASLSAPGSEY--GSPSVISVSKGSPDGSHPVVVAPYNGGPPRTCPKIKQEAVSSCTHLGA
..:: . .:: . . : :: : .: : : . :: ...... : : .
CCDS34 HRRASPGLSMPSSSPPIKKYSPPSP-GVQPFGV-PLSM-PPVMAAALSRHGIRSPGILPV
90 100 110 120 130 140
300 310 320 330
pF1KB4 GPPLSNGHRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDC-------HPA----LPLPPG
:. .:. . : : .. . .:. :: . .: . . ::
CCDS34 IQPVVV--QPVPFMYTSHLQQPLMVSLSEEMENSSSSMQVPVIESYEKPISQKKIKIEPG
150 160 170 180 190 200
340 350 360 370 380 390
pF1KB4 FHPHPGPNYPSFL-PDQMQPQVPPLHY-QELMPPGSCMP-EEPKPKRGRRSWPRKRTATH
..:. :: . : :. :: :: : .: ..: : .. . ..: :
CCDS34 IEPQRTDYYPEEMSPPLMNSVSPPQALLQENHPSVIVQPGKRPLPVESPDTQRKRRI--H
210 220 230 240 250 260
400 410 420 430 440 450
pF1KB4 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF
::: ::.:.:::::::::: :::::::::.: :.:: ::::::::::::.::::: .::
CCDS34 RCDYDGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPF
270 280 290 300 310 320
460 470
pF1KB4 QCQKCDRAFSRSDHLALHMKRHF
:: :::.:::::::::: :::
CCDS34 QCPDCDRSFSRSDHLALHRKRHMLV
330 340
479 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:36:42 2016 done: Thu Nov 3 15:36:43 2016
Total Scan time: 4.280 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]