(Circular) (Six-base) MAPSORT of: pF1KB4964.seq Check: 239 from: 1 to: 7505 pF1KB4964 7505 bp With 182 enzymes: SgfI * June 20, 2008 10:24 .. AatII G_ACGT'C Cuts at: 532 532 Size: 7505 AccI GT'mk_AC Cuts at: 532 3905 3995 4543 532 Size: 3373 90 548 3494 Fragments arranged by size: 3494 3373 548 90 Acc65I G'GTAC_C Cuts at: 4521 4521 Size: 7505 AclI AA'CG_TT Cuts at: 1659 7345 1659 Size: 5686 1819 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 604 784 1519 1685 1827 2386 2431 3853 5330 Size: 180 735 166 142 559 45 1422 1477 Cuts at: 5330 5762 6509 6777 604 Size: 432 747 268 1332 Fragments arranged by size: 1477 1422 1332 747 735 559 432 268 180 166 142 45 AflIII A'CryG_T Cuts at: 362 1390 2786 4461 4857 5961 6938 362 Size: 1028 1396 1675 396 1104 977 929 Fragments arranged by size: 1675 1396 1104 1028 977 929 396 AgeI A'CCGG_T Cuts at: 2383 5893 2383 Size: 3510 3995 AhdI GACnn_n'nnGTC Cuts at: 375 2946 375 Size: 2571 4934 AleI CACnn'nnGTG Cuts at: 361 2659 361 Size: 2298 5207 AlwNI CAG_nnn'CTG Cuts at: 444 3755 4810 6377 444 Size: 3311 1055 1567 1572 Fragments arranged by size: 3311 1572 1567 1055 ApaI G_GGCC'C Cuts at: 277 277 Size: 7505 ApaLI G'TGCA_C Cuts at: 1177 2728 6275 1177 Size: 1551 3547 2407 Fragments arranged by size: 3547 2407 1551 ApoI r'AATT_y Cuts at: 652 2077 2227 2925 4074 4443 4509 6858 7114 Size: 1425 150 698 1149 369 66 2349 256 Cuts at: 7114 652 Size: 1043 Fragments arranged by size: 2349 1425 1149 1043 698 369 256 150 66 AseI AT'TA_AT Cuts at: 20 20 Size: 7505 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 7505 AvaI C'yCGr_G Cuts at: 277 1048 3532 4116 4525 277 Size: 771 2484 584 409 3257 Fragments arranged by size: 3257 2484 771 584 409 AvrII C'CTAG_G Cuts at: 3253 4003 3253 Size: 750 6755 BamHI G'GATC_C Cuts at: 522 2773 3564 4530 522 Size: 2251 791 966 3497 Fragments arranged by size: 3497 2251 966 791 BanI G'GyrC_C Cuts at: 171 1732 4521 4935 5183 5218 171 Size: 1561 2789 414 248 35 2458 Fragments arranged by size: 2789 2458 1561 414 248 35 BanII G_rGCy'C Cuts at: 277 908 3253 4519 5549 277 Size: 631 2345 1266 1030 2233 Fragments arranged by size: 2345 2233 1266 1030 631 BbeI G_GCGC'C Cuts at: 175 4939 5187 175 Size: 4764 248 2493 Fragments arranged by size: 4764 2493 248 BbsI GAAGACnn'nnnn_ Cuts at: 606 1373 3863 606 Size: 767 2490 4248 Fragments arranged by size: 4248 2490 767 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1619 1653 1619 Size: 34 7471 BciVI GTATCCnnnnn_n' Cuts at: 1849 5403 6164 7505 1849 Size: 3554 761 1341 1849 Fragments arranged by size: 3554 1849 1341 761 BclI T'GATC_A Cuts at: 506 716 5025 506 Size: 210 4309 2986 Fragments arranged by size: 4309 2986 210 BfrBI ATG'CAT Cuts at: 2211 2211 Size: 7505 BglI GCCn_nnn'nGGC Cuts at: 2053 2590 2053 Size: 537 6968 BglII A'GATC_T Cuts at: 3455 5020 7057 3455 Size: 1565 2037 3903 Fragments arranged by size: 3903 2037 1565 BlpI GC'TnA_GC Cuts at: 1255 4617 1255 Size: 3362 4143 Bme1580I G_kGCm'C Cuts at: 277 387 1181 1688 2732 3924 5130 5223 6279 Size: 110 794 507 1044 1192 1206 93 1056 Cuts at: 6279 277 Size: 1503 Fragments arranged by size: 1503 1206 1192 1056 1044 794 507 110 93 BmgBI CAC'GTC Cuts at: 243 306 1391 243 Size: 63 1085 6357 Fragments arranged by size: 6357 1085 63 BmrI ACTGGGnnnn_n' Cuts at: 966 2507 3501 3563 3927 4717 4798 5133 7277 Size: 1541 994 62 364 790 81 335 2144 Cuts at: 7277 966 Size: 1194 Fragments arranged by size: 2144 1541 1194 994 790 364 335 81 62 BmtI G_CTAG'C Cuts at: 2039 2039 Size: 7505 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 855 1053 2911 4190 5872 855 Size: 198 1858 1279 1682 2488 Fragments arranged by size: 2488 1858 1682 1279 198 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 991 1048 1360 2500 2738 4087 4171 991 Size: 57 312 1140 238 1349 84 4325 Fragments arranged by size: 4325 1349 1140 312 238 84 57 Bpu10I CC'TnA_GC Cuts at: 2596 3958 4018 2596 Size: 1362 60 6083 Fragments arranged by size: 6083 1362 60 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2829 4030 4089 4341 4681 5560 6052 6350 2829 Size: 1201 59 252 340 879 492 298 3984 Fragments arranged by size: 3984 1201 879 492 340 298 252 59 BsaI GGTCTCn'nnnn_ Cuts at: 894 2115 2476 3706 7209 894 Size: 1221 361 1230 3503 1190 Fragments arranged by size: 3503 1230 1221 1190 361 BsaAI yAC'GTr Cuts at: 363 3314 4858 363 Size: 2951 1544 3010 Fragments arranged by size: 3010 2951 1544 BsaBI GATnn'nnATC Cuts at: 6 5019 7056 6 Size: 5013 2037 455 Fragments arranged by size: 5013 2037 455 BsaHI Gr'CG_yC Cuts at: 172 529 2252 4936 5184 5886 7382 172 Size: 357 1723 2684 248 702 1496 295 Fragments arranged by size: 2684 1723 1496 702 357 295 248 BsaWI w'CCGG_w Cuts at: 2383 2801 3611 4694 5215 5893 6167 6314 6725 Size: 418 810 1083 521 678 274 147 411 Cuts at: 6725 2383 Size: 3163 Fragments arranged by size: 3163 1083 810 678 521 418 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 2473 2503 2824 2854 4177 4207 2473 Size: 30 321 30 1323 30 5771 Fragments arranged by size: 5771 1323 321 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 447 1357 2488 2788 2832 4179 447 Size: 910 1131 300 44 1347 3773 Fragments arranged by size: 3773 1347 1131 910 300 44 BseYI C'CCAG_C Cuts at: 225 698 880 2323 3885 4930 5688 6265 6761 Size: 473 182 1443 1562 1045 758 577 496 Cuts at: 6761 225 Size: 969 Fragments arranged by size: 1562 1443 1045 969 758 577 496 473 182 BsiEI CG_ry'CG Cuts at: 104 2673 4315 5047 5093 6301 104 Size: 2569 1642 732 46 1208 1308 Fragments arranged by size: 2569 1642 1308 1208 732 46 BsiHKAI G_wGCw'C Cuts at: 908 1181 2624 2668 2732 3112 4519 5297 5487 Size: 273 1443 44 64 380 1407 778 190 Cuts at: 5487 6279 908 Size: 792 2134 Fragments arranged by size: 2134 1443 1407 792 778 380 273 190 64 44 BsmI GAATG_Cn' Cuts at: 485 2717 3975 485 Size: 2232 1258 4015 Fragments arranged by size: 4015 2232 1258 BsmBI CGTCTCn'nnnn_ Cuts at: 1381 1743 1381 Size: 362 7143 Bsp1286I G_dGCh'C Cuts at: 277 387 908 1181 1688 2624 2668 2732 3112 Size: 110 521 273 507 936 44 64 380 Cuts at: 3112 3253 3924 4519 5130 5223 5297 5487 5549 Size: 141 671 595 611 93 74 190 62 Cuts at: 5549 6279 277 Size: 730 1503 Fragments arranged by size: 1503 936 730 671 611 595 521 507 380 273 190 141 110 93 74 64 62 44 BspEI T'CCGG_A Cuts at: 6725 6725 Size: 7505 BspHI T'CATG_A Cuts at: 2063 2127 6681 2063 Size: 64 4554 2887 Fragments arranged by size: 4554 2887 64 BspMI ACCTGCnnnn'nnnn_ Cuts at: 3891 4555 4769 5071 5452 3891 Size: 664 214 302 381 5944 Fragments arranged by size: 5944 664 381 302 214 BsrBI CCG'CTC Cuts at: 50 839 5797 5851 7335 7500 50 Size: 789 4958 54 1484 165 55 Fragments arranged by size: 4958 1484 789 165 55 54 BsrDI GCAATG_nn' Cuts at: 5417 5417 Size: 7505 BsrFI r'CCGG_y Cuts at: 144 2095 2383 2672 3014 3728 5503 5684 5893 Size: 1951 288 289 342 714 1775 181 209 Cuts at: 5893 144 Size: 1756 Fragments arranged by size: 1951 1775 1756 714 342 289 288 209 181 BsrGI T'GTAC_A Cuts at: 4466 4466 Size: 7505 BssSI C'ACGA_G Cuts at: 400 5776 6134 400 Size: 5376 358 1771 Fragments arranged by size: 5376 1771 358 BstAPI GCAn_nnn'nTGC Cuts at: 1107 3755 4392 4882 1107 Size: 2648 637 490 3730 Fragments arranged by size: 3730 2648 637 490 BstBI TT'CG_AA Cuts at: 261 5866 261 Size: 5605 1900 BstEII G'GTnAC_C Cuts at: 624 1545 2349 3880 624 Size: 921 804 1531 4249 Fragments arranged by size: 4249 1531 921 804 BstXI CCAn_nnnn'nTGG Cuts at: 1191 1191 Size: 7505 BstYI r'GATC_y Cuts at: 1 522 770 2501 2773 3455 3498 3564 4530 Size: 521 248 1731 272 682 43 66 966 Cuts at: 4530 4997 5020 5355 5601 6613 6699 6711 7057 Size: 467 23 335 246 1012 86 12 346 Cuts at: 7057 1 Size: 449 Fragments arranged by size: 1731 1012 966 682 521 467 449 346 335 272 248 246 86 66 43 23 12 Bsu36I CC'TnA_GG Cuts at: 1261 1261 Size: 7505 BtgI C'CryG_G Cuts at: 107 393 572 1890 2588 3158 107 Size: 286 179 1318 698 570 4454 Fragments arranged by size: 4454 1318 698 570 286 179 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 3830 5455 5636 5799 3830 Size: 1625 181 163 5536 Fragments arranged by size: 5536 1625 181 163 BtsI GCAGTG_nn' Cuts at: 3744 4748 3744 Size: 1004 6501 ClaI AT'CG_AT Cuts at: 3851 3851 Size: 7505 DraI TTT'AAA Cuts at: 3366 4442 4504 3366 Size: 1076 62 6367 Fragments arranged by size: 6367 1076 62 DraIII CAC_nnn'GTG Cuts at: 243 1272 243 Size: 1029 6476 DrdI GACnn_nn'nnGTC Cuts at: 610 2257 5211 6069 610 Size: 1647 2954 858 2046 Fragments arranged by size: 2954 2046 1647 858 EaeI y'GGCC_r Cuts at: 3008 3101 5090 5264 5655 5682 7027 3008 Size: 93 1989 174 391 27 1345 3486 Fragments arranged by size: 3486 1989 1345 391 174 93 27 EagI C'GGCC_G Cuts at: 5090 5090 Size: 7505 EarI CTCTTCn'nnn_ Cuts at: 783 2416 2632 2692 3263 3626 5528 5738 783 Size: 1633 216 60 571 363 1902 210 2550 Fragments arranged by size: 2550 1902 1633 571 363 216 210 60 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 202 5713 6023 6169 7315 202 Size: 5511 310 146 1146 392 Fragments arranged by size: 5511 1146 392 310 146 EcoICRI GAG'CTC Cuts at: 906 4517 906 Size: 3611 3894 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 604 784 991 1048 1360 1519 1685 1827 2386 Size: 180 207 57 312 159 166 142 559 Cuts at: 2386 2431 2500 2738 3853 4087 4171 5330 5762 Size: 45 69 238 1115 234 84 1159 432 Cuts at: 5762 6509 6777 604 Size: 747 268 1332 Fragments arranged by size: 1332 1159 1115 747 559 432 312 268 238 234 207 180 166 159 142 84 69 57 45 EcoNI CCTnn'n_nnAGG Cuts at: 1342 1342 Size: 7505 EcoO109I rG'GnC_Cy Cuts at: 196 273 274 1092 1347 1935 2948 3233 3800 Size: 77 1 818 255 588 1013 285 567 Cuts at: 3800 4025 4644 196 Size: 225 619 3057 Fragments arranged by size: 3057 1013 818 619 588 567 285 255 225 77 1 EcoRI G'AATT_C Cuts at: 652 4509 652 Size: 3857 3648 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2661 3378 3655 4194 5524 2661 Size: 717 277 539 1330 4642 Fragments arranged by size: 4642 1330 717 539 277 FspI TGC'GCA Cuts at: 5286 5286 Size: 7505 HaeII r_GCGC'y Cuts at: 175 1772 4939 5187 6209 7188 175 Size: 1597 3167 248 1022 979 492 Fragments arranged by size: 3167 1597 1022 979 492 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 213 245 361 393 439 471 514 542 546 Size: 32 116 32 46 32 43 28 4 Cuts at: 546 574 910 942 2932 2964 3169 3201 3440 Size: 28 336 32 1990 32 205 32 239 Cuts at: 3440 3472 3954 3986 4177 4209 5347 5377 5379 Size: 32 482 32 191 32 1138 30 2 Cuts at: 5379 5409 213 Size: 30 2309 Fragments arranged by size: 2309 1990 1138 482 336 239 205 191 116 46 43 32 32 32 32 32 32 32 32 32 30 30 28 28 4 2 HincII GTy'rAC Cuts at: 1575 3996 4328 4544 1575 Size: 2421 332 216 4536 Fragments arranged by size: 4536 2421 332 216 HindIII A'AGCT_T Cuts at: 1504 1504 Size: 7505 HpaI GTT'AAC Cuts at: 1575 1575 Size: 7505 KasI G'GCGC_C Cuts at: 171 4935 5183 171 Size: 4764 248 2493 Fragments arranged by size: 4764 2493 248 KpnI G_GTAC'C Cuts at: 4525 4525 Size: 7505 MfeI C'AATT_G Cuts at: 1907 1907 Size: 7505 MluI A'CGCG_T Cuts at: 4461 6938 4461 Size: 2477 5028 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 550 1322 1396 1833 2693 2855 3104 3668 3788 Size: 772 74 437 860 162 249 564 120 Cuts at: 3788 6176 6360 550 Size: 2388 184 1695 Fragments arranged by size: 2388 1695 860 772 564 437 249 184 162 120 74 MscI TGG'CCA Cuts at: 3010 5266 3010 Size: 2256 5249 MslI CAynn'nnrTG Cuts at: 361 577 2659 2905 4223 4367 5494 5621 361 Size: 216 2082 246 1318 144 1127 127 2245 Fragments arranged by size: 2245 2082 1318 1127 246 216 144 127 MspA1I CmG'CkG Cuts at: 762 1012 1064 2541 2714 3144 4616 4930 5290 Size: 250 52 1477 173 430 1472 314 360 Cuts at: 5290 6303 6548 762 Size: 1013 245 1719 Fragments arranged by size: 1719 1477 1472 1013 430 360 314 250 245 173 52 NaeI GCC'GGC Cuts at: 146 5686 146 Size: 5540 1965 NarI GG'CG_CC Cuts at: 172 4936 5184 172 Size: 4764 248 2493 Fragments arranged by size: 4764 2493 248 NcoI C'CATG_G Cuts at: 107 1890 2588 107 Size: 1783 698 5024 Fragments arranged by size: 5024 1783 698 NgoMIV G'CCGG_C Cuts at: 144 5684 144 Size: 5540 1965 NheI G'CTAG_C Cuts at: 2035 2035 Size: 7505 NsiI A_TGCA'T Cuts at: 2213 2213 Size: 7505 NspI r_CATG'y Cuts at: 613 708 2211 2577 2790 2829 3771 4390 4558 Size: 95 1503 366 213 39 942 619 168 Cuts at: 4558 5058 5965 613 Size: 500 907 2153 Fragments arranged by size: 2153 1503 942 907 619 500 366 213 168 95 39 PasI CC'CwG_GG Cuts at: 4433 4433 Size: 7505 PciI A'CATG_T Cuts at: 2786 5961 2786 Size: 3175 4330 PflMI CCAn_nnn'nTGG Cuts at: 444 4149 4236 444 Size: 3705 87 3713 Fragments arranged by size: 3713 3705 87 PfoI T'CCnGG_A Cuts at: 3548 4030 3548 Size: 482 7023 PmeI GTTT'AAAC Cuts at: 4504 4504 Size: 7505 PmlI CAC'GTG Cuts at: 363 3314 363 Size: 2951 4554 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 6644 6676 6644 Size: 32 7473 PpuMI rG'GwC_Cy Cuts at: 196 1092 2948 3233 3800 196 Size: 896 1856 285 567 3901 Fragments arranged by size: 3901 1856 896 567 285 PshAI GACnn'nnGTC Cuts at: 754 754 Size: 7505 PspOMI G'GGCC_C Cuts at: 273 273 Size: 7505 PstI C_TGCA'G Cuts at: 3751 4453 4552 5237 3751 Size: 702 99 685 6019 Fragments arranged by size: 6019 702 685 99 PvuI CG_AT'CG Cuts at: 104 104 Size: 7505 PvuII CAG'CTG Cuts at: 762 1064 2541 2714 3144 4930 5290 762 Size: 302 1477 173 430 1786 360 2977 Fragments arranged by size: 2977 1786 1477 430 360 302 173 RsrII CG'GwC_CG Cuts at: 166 5700 166 Size: 5534 1971 SacI G_AGCT'C Cuts at: 908 4519 908 Size: 3611 3894 SalI G'TCGA_C Cuts at: 3994 4542 3994 Size: 548 6957 SanDI GG'GwC_CC Cuts at: 196 196 Size: 7505 SapI GCTCTTCn'nnn_ Cuts at: 2692 5528 5738 2692 Size: 2836 210 4459 Fragments arranged by size: 4459 2836 210 SbfI CC_TGCA'GG Cuts at: 4552 4552 Size: 7505 ScaI AGT'ACT Cuts at: 7022 7022 Size: 7505 SexAI A'CCwGG_T Cuts at: 1172 1172 Size: 7505 SfcI C'TryA_G Cuts at: 33 645 963 2709 3399 3464 3747 4449 4548 Size: 612 318 1746 690 65 283 702 99 Cuts at: 4548 5233 6226 6417 33 Size: 685 993 191 1121 Fragments arranged by size: 1746 1121 993 702 690 685 612 318 283 191 99 65 SfoI GGC'GCC Cuts at: 173 4937 5185 173 Size: 4764 248 2493 Fragments arranged by size: 4764 2493 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 7505 SmaI CCC'GGG Cuts at: 4527 4527 Size: 7505 SmlI C'TyrA_G Cuts at: 2844 4045 4104 4320 4660 5575 6067 6329 2844 Size: 1201 59 216 340 915 492 262 4020 Fragments arranged by size: 4020 1201 915 492 340 262 216 59 SpeI A'CTAG_T Cuts at: 67 67 Size: 7505 SphI G_CATG'C Cuts at: 4558 5058 4558 Size: 500 7005 SspI AAT'ATT Cuts at: 213 213 Size: 7505 StyI C'CwwG_G Cuts at: 107 843 1055 1890 2255 2416 2588 3253 3353 Size: 736 212 835 365 161 172 665 100 Cuts at: 3353 3392 4003 4143 4639 4993 107 Size: 39 611 140 496 354 2619 Fragments arranged by size: 2619 835 736 665 611 496 365 354 212 172 161 140 100 39 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1127 1770 2446 2874 4301 5088 5221 5680 5889 Size: 643 676 428 1427 787 133 459 209 Cuts at: 5889 1127 Size: 2743 Fragments arranged by size: 2743 1427 787 676 643 459 428 209 133 TatI w'GTAC_w Cuts at: 2216 2933 4421 4466 7020 2216 Size: 717 1488 45 2554 2701 Fragments arranged by size: 2701 2554 1488 717 45 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2473 2505 7022 7054 2473 Size: 32 4517 32 2924 Fragments arranged by size: 4517 2924 32 32 Tth111I GACn'n_nGTC Cuts at: 5302 5302 Size: 7505 XbaI T'CTAG_A Cuts at: 1755 3130 4536 1755 Size: 1375 1406 4724 Fragments arranged by size: 4724 1406 1375 XcmI CCAnnnn_n'nnnnTGG Cuts at: 114 1992 5000 114 Size: 1878 3008 2619 Fragments arranged by size: 3008 2619 1878 XmaI C'CCGG_G Cuts at: 4525 4525 Size: 7505 XmnI GAAnn'nnTTC Cuts at: 4061 4061 Size: 7505 ZraI GAC'GTC Cuts at: 530 530 Size: 7505 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflIII AgeI AhdI AleI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NsiI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PspOMI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SpeI SphI SspI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AflII AlfI AloI AscI BaeI BbvCI BsgI BsiWI BssHII BstZ17I CspCI EcoRV FseI FspAI NdeI NotI NruI PacI PsiI PspXI PsrI SacII SfiI SgrAI SnaBI SrfI StuI SwaI XhoI