Result of FASTA (omim) for
pF1KB4977
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4977, 400 aa
1>>>pF1KB4977 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3898+/-0.000414; mu= 11.8676+/- 0.026
mean_var=116.4731+/-24.627, 0's: 0 Z-trim(113.9): 180 B-trim: 353 in 2/54
Lambda= 0.118840
statistics sampled from 23308 (23533) to 23308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.276), width: 16
Scan time: 6.730
The best scores are: opt bits E(85289)
NP_003788 (OMIM: 605984) polycomb protein EED isof ( 441) 2783 488.6 1.3e-137
XP_016874001 (OMIM: 605984) PREDICTED: polycomb pr ( 403) 2777 487.5 2.4e-137
XP_011543633 (OMIM: 605984) PREDICTED: polycomb pr ( 415) 2224 392.7 8.7e-109
XP_011543632 (OMIM: 605984) PREDICTED: polycomb pr ( 428) 2224 392.7 8.9e-109
NP_001294936 (OMIM: 605984) polycomb protein EED i ( 466) 2224 392.7 9.5e-109
XP_016874002 (OMIM: 605984) PREDICTED: polycomb pr ( 323) 1655 295.1 1.7e-79
NP_001317263 (OMIM: 605984) polycomb protein EED i ( 361) 1655 295.1 1.8e-79
NP_004362 (OMIM: 601924,616414) coatomer subunit a (1224) 188 44.0 0.0024
NP_001091868 (OMIM: 601924,616414) coatomer subuni (1233) 188 44.0 0.0024
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 181 42.4 0.0025
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 181 42.5 0.0027
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 172 40.8 0.0058
NP_942593 (OMIM: 610767,611081) autophagy-related ( 444) 174 41.2 0.0058
XP_005246143 (OMIM: 610767,611081) PREDICTED: auto ( 463) 174 41.3 0.006
XP_005246141 (OMIM: 610767,611081) PREDICTED: auto ( 480) 174 41.3 0.0062
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 172 40.8 0.0063
NP_001177196 (OMIM: 610767,611081) autophagy-relat ( 491) 174 41.3 0.0063
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 172 40.8 0.0064
NP_001177195 (OMIM: 610767,611081) autophagy-relat ( 523) 174 41.3 0.0066
XP_006712671 (OMIM: 610767,611081) PREDICTED: auto ( 540) 174 41.3 0.0067
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 172 40.9 0.0069
NP_060444 (OMIM: 610767,611081) autophagy-related ( 588) 174 41.3 0.0072
NP_110430 (OMIM: 610767,611081) autophagy-related ( 607) 174 41.4 0.0074
XP_005246139 (OMIM: 610767,611081) PREDICTED: auto ( 624) 174 41.4 0.0075
NP_001269469 (OMIM: 604596) CMT1A duplicated regio ( 714) 174 41.4 0.0083
XP_016879510 (OMIM: 611679) PREDICTED: F-box/WD re ( 724) 174 41.4 0.0084
XP_011521928 (OMIM: 611679) PREDICTED: F-box/WD re ( 745) 174 41.4 0.0086
NP_006373 (OMIM: 604596) CMT1A duplicated region t ( 752) 174 41.4 0.0087
XP_011521927 (OMIM: 611679) PREDICTED: F-box/WD re ( 856) 174 41.5 0.0095
XP_016879509 (OMIM: 611679) PREDICTED: F-box/WD re ( 856) 174 41.5 0.0095
>>NP_003788 (OMIM: 605984) polycomb protein EED isoform (441 aa)
initn: 2783 init1: 2783 opt: 2783 Z-score: 2591.7 bits: 488.6 E(85289): 1.3e-137
Smith-Waterman score: 2783; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
310 320 330 340 350 360
370 380 390 400
pF1KB4 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK
::::::::::::::::::::::::::::::::::::::::
NP_003 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
370 380 390 400 410 420
NP_003 DSSILIAVCDDASIWRWDRLR
430 440
>>XP_016874001 (OMIM: 605984) PREDICTED: polycomb protei (403 aa)
initn: 2777 init1: 2777 opt: 2777 Z-score: 2586.7 bits: 487.5 E(85289): 2.4e-137
Smith-Waterman score: 2777; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
310 320 330 340 350 360
370 380 390 400
pF1KB4 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK
:::::::::::::::::::::::::::::::::::::::
XP_016 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKANRDH
370 380 390 400
>>XP_011543633 (OMIM: 605984) PREDICTED: polycomb protei (415 aa)
initn: 2223 init1: 2223 opt: 2224 Z-score: 2074.1 bits: 392.7 E(85289): 8.7e-109
Smith-Waterman score: 2552; 93.8% identity (93.8% similar) in 400 aa overlap (1-375:1-400)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330
pF1KB4 TRDIHRNYVDCVRWLGDLILSKS-------------------------CENAIVCWKPGK
::::::::::::::::::::::: ::::::::::::
XP_011 TRDIHRNYVDCVRWLGDLILSKSGRAILHSHQQCMRDPVSPNLRQHLSCENAIVCWKPGK
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
::::::::::::::::::::::::::::::::::::::::
XP_011 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKEYKTQRNSQEHRGWN
370 380 390 400 410
400
pF1KB4 PHKAK
>>XP_011543632 (OMIM: 605984) PREDICTED: polycomb protei (428 aa)
initn: 2223 init1: 2223 opt: 2224 Z-score: 2073.9 bits: 392.7 E(85289): 8.9e-109
Smith-Waterman score: 2717; 94.1% identity (94.1% similar) in 424 aa overlap (1-399:1-424)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330
pF1KB4 TRDIHRNYVDCVRWLGDLILSKS-------------------------CENAIVCWKPGK
::::::::::::::::::::::: ::::::::::::
XP_011 TRDIHRNYVDCVRWLGDLILSKSGRAILHSHQQCMRDPVSPNLRQHLSCENAIVCWKPGK
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
370 380 390 400 410 420
400
pF1KB4 PHKAK
::::
XP_011 PHKANRDH
>>NP_001294936 (OMIM: 605984) polycomb protein EED isofo (466 aa)
initn: 2223 init1: 2223 opt: 2224 Z-score: 2073.4 bits: 392.7 E(85289): 9.5e-109
Smith-Waterman score: 2723; 94.1% identity (94.1% similar) in 425 aa overlap (1-400:1-425)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330
pF1KB4 TRDIHRNYVDCVRWLGDLILSKS-------------------------CENAIVCWKPGK
::::::::::::::::::::::: ::::::::::::
NP_001 TRDIHRNYVDCVRWLGDLILSKSGRAILHSHQQCMRDPVSPNLRQHLSCENAIVCWKPGK
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
370 380 390 400 410 420
400
pF1KB4 PHKAK
:::::
NP_001 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR
430 440 450 460
>>XP_016874002 (OMIM: 605984) PREDICTED: polycomb protei (323 aa)
initn: 1677 init1: 1655 opt: 1655 Z-score: 1548.3 bits: 295.1 E(85289): 1.7e-79
Smith-Waterman score: 2044; 79.9% identity (79.9% similar) in 399 aa overlap (1-399:1-319)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::
XP_016 SA----------------------------------------------------------
310 320 330 340 350 360
pF1KB4 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
::::::::::::::::::::::::::::::::::::::
XP_016 ----------------------SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
250 260 270 280
370 380 390 400
pF1KB4 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK
:::::::::::::::::::::::::::::::::::::::
XP_016 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKANRDH
290 300 310 320
>>NP_001317263 (OMIM: 605984) polycomb protein EED isofo (361 aa)
initn: 1655 init1: 1655 opt: 1655 Z-score: 1547.7 bits: 295.1 E(85289): 1.8e-79
Smith-Waterman score: 2050; 80.0% identity (80.0% similar) in 400 aa overlap (1-400:1-320)
10 20 30 40 50 60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::
NP_001 SA----------------------------------------------------------
310 320 330 340 350 360
pF1KB4 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
::::::::::::::::::::::::::::::::::::::
NP_001 ----------------------SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
250 260 270 280
370 380 390 400
pF1KB4 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK
::::::::::::::::::::::::::::::::::::::::
NP_001 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
290 300 310 320 330 340
NP_001 DSSILIAVCDDASIWRWDRLR
350 360
>>NP_004362 (OMIM: 601924,616414) coatomer subunit alpha (1224 aa)
initn: 116 init1: 67 opt: 188 Z-score: 181.1 bits: 44.0 E(85289): 0.0024
Smith-Waterman score: 191; 21.3% identity (53.3% similar) in 244 aa overlap (155-391:58-278)
130 140 150 160 170 180
pF1KB4 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK
: . ..::.. .:. :.. : .:.
NP_004 LHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLF
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB4 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY
.:: . : :: . : .::.: :...:.:: :. : : .. :: :. :..
NP_004 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRVWNWQSRTCVCVL---TGHNHYVMCAQF
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB4 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF--PDFSTR
. ..: ..:.....: :.. : :.. . . ... :. : : ..
NP_004 HPTEDLVVSASLDQTVRVWDISGLR-----KKNLSPGAVESDVRGITGVDLFGTTDAVVK
150 160 170 180 190
310 320 330 340 350
pF1KB4 DIHRNYVDCVRWLG-----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD
. ... : : . ::.: . . . :. ... : : . : :...
NP_004 HVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWR-------MNESKAWEVD-TCRGHYN
200 210 220 230 240 250
360 370 380 390 400
pF1KB4 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK
.: ... : :... ... .. :::.
NP_004 NVSCAVFHPR------QELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLN
260 270 280 290 300
NP_004 LFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFP
310 320 330 340 350 360
>>NP_001091868 (OMIM: 601924,616414) coatomer subunit al (1233 aa)
initn: 116 init1: 67 opt: 188 Z-score: 181.1 bits: 44.0 E(85289): 0.0024
Smith-Waterman score: 191; 21.3% identity (53.3% similar) in 244 aa overlap (155-391:58-278)
130 140 150 160 170 180
pF1KB4 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK
: . ..::.. .:. :.. : .:.
NP_001 LHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLF
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB4 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY
.:: . : :: . : .::.: :...:.:: :. : : .. :: :. :..
NP_001 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRVWNWQSRTCVCVL---TGHNHYVMCAQF
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB4 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF--PDFSTR
. ..: ..:.....: :.. : :.. . . ... :. : : ..
NP_001 HPTEDLVVSASLDQTVRVWDISGLR-----KKNLSPGAVESDVRGITGVDLFGTTDAVVK
150 160 170 180 190
310 320 330 340 350
pF1KB4 DIHRNYVDCVRWLG-----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD
. ... : : . ::.: . . . :. ... : : . : :...
NP_001 HVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWR-------MNESKAWEVD-TCRGHYN
200 210 220 230 240 250
360 370 380 390 400
pF1KB4 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK
.: ... : :... ... .. :::.
NP_001 NVSCAVFHPR------QELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLN
260 270 280 290 300
NP_001 LFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFP
310 320 330 340 350 360
>>NP_001186706 (OMIM: 614784,615973) POC1 centriolar pro (436 aa)
initn: 166 init1: 82 opt: 181 Z-score: 180.8 bits: 42.4 E(85289): 0.0025
Smith-Waterman score: 181; 28.6% identity (61.6% similar) in 112 aa overlap (155-266:151-258)
130 140 150 160 170 180
pF1KB4 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK
: : : .: ::: ... . . . ..
NP_001 SEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY
:: :....: ..::: . : :...:.: .:.. .. :. ..:: :.....
NP_001 HYQVHSGGVNCISFHP-SGNYLITASSDGTLKILDLLEGRLIYT---LQGHTGPVFTVSF
190 200 210 220 230
250 260 270 280 290 300
pF1KB4 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI
. :: . : : : .. ::: :
NP_001 SKGGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEE
240 250 260 270 280 290
400 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:19:58 2016 done: Fri Nov 4 03:19:59 2016
Total Scan time: 6.730 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]