Result of FASTA (omim) for
pF1KB4988
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4988, 253 aa
1>>>pF1KB4988 253 - 253 aa - 253 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3922+/-0.000422; mu= 19.6534+/- 0.026
mean_var=61.9705+/-12.547, 0's: 0 Z-trim(111.1): 97 B-trim: 586 in 1/48
Lambda= 0.162923
statistics sampled from 19532 (19635) to 19532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.23), width: 16
Scan time: 6.300
The best scores are: opt bits E(85289)
NP_005715 (OMIM: 613134) tetraspanin-3 isoform 1 [ ( 253) 1703 408.9 4.5e-114
XP_016877346 (OMIM: 613134) PREDICTED: tetraspanin ( 214) 1294 312.7 3.5e-85
NP_001161884 (OMIM: 613134) tetraspanin-3 isoform ( 189) 1133 274.8 7.9e-74
NP_944492 (OMIM: 613134) tetraspanin-3 isoform 2 [ ( 228) 993 241.9 7.2e-64
NP_001034579 (OMIM: 179620,602243,609057) CD151 an ( 253) 460 116.7 4e-26
NP_620599 (OMIM: 179620,602243,609057) CD151 antig ( 253) 460 116.7 4e-26
NP_620598 (OMIM: 179620,602243,609057) CD151 antig ( 253) 460 116.7 4e-26
NP_004348 (OMIM: 179620,602243,609057) CD151 antig ( 253) 460 116.7 4e-26
NP_004606 (OMIM: 300096,300210) tetraspanin-7 [Hom ( 249) 456 115.8 7.6e-26
NP_003261 (OMIM: 300191) tetraspanin-6 isoform a [ ( 245) 441 112.2 8.7e-25
XP_005253159 (OMIM: 602644) PREDICTED: tetraspanin ( 238) 414 105.9 6.9e-23
NP_001020407 (OMIM: 602644) tetraspanin-4 isoform ( 238) 414 105.9 6.9e-23
NP_001020408 (OMIM: 602644) tetraspanin-4 isoform ( 238) 414 105.9 6.9e-23
NP_003262 (OMIM: 602644) tetraspanin-4 isoform a [ ( 238) 414 105.9 6.9e-23
NP_001020406 (OMIM: 602644) tetraspanin-4 isoform ( 238) 414 105.9 6.9e-23
NP_001020405 (OMIM: 602644) tetraspanin-4 isoform ( 238) 414 105.9 6.9e-23
NP_001020409 (OMIM: 602644) tetraspanin-4 isoform ( 238) 414 105.9 6.9e-23
NP_001244318 (OMIM: 155740) CD63 antigen isoform A ( 238) 413 105.6 8.2e-23
NP_001771 (OMIM: 155740) CD63 antigen isoform A [H ( 238) 413 105.6 8.2e-23
NP_001254627 (OMIM: 155740) CD63 antigen isoform A ( 238) 413 105.6 8.2e-23
NP_001244319 (OMIM: 155740) CD63 antigen isoform A ( 238) 413 105.6 8.2e-23
NP_001244320 (OMIM: 155740) CD63 antigen isoform A ( 238) 413 105.6 8.2e-23
NP_001244321 (OMIM: 155740) CD63 antigen isoform C ( 215) 409 104.7 1.5e-22
NP_006666 (OMIM: 613137) tetraspanin-9 [Homo sapie ( 239) 382 98.4 1.3e-20
NP_001161792 (OMIM: 613137) tetraspanin-9 [Homo sa ( 239) 382 98.4 1.3e-20
XP_011518638 (OMIM: 602644) PREDICTED: tetraspanin ( 269) 380 97.9 1.9e-20
NP_005718 (OMIM: 613170) tetraspanin-1 [Homo sapie ( 241) 356 92.2 8.9e-19
XP_006719646 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 353 91.5 1.4e-18
NP_004607 (OMIM: 600769) tetraspanin-8 [Homo sapie ( 237) 353 91.5 1.4e-18
XP_016875402 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 353 91.5 1.4e-18
NP_001020410 (OMIM: 602644) tetraspanin-4 isoform ( 174) 338 87.9 1.3e-17
XP_011518643 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 338 87.9 1.3e-17
XP_011518639 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 338 87.9 1.3e-17
XP_011518640 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 338 87.9 1.3e-17
XP_011518642 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 338 87.9 1.3e-17
XP_011538762 (OMIM: 613170) PREDICTED: tetraspanin ( 258) 339 88.3 1.5e-17
NP_001035122 (OMIM: 151525) leukocyte surface anti ( 219) 329 85.9 6.7e-17
NP_000551 (OMIM: 151525) leukocyte surface antigen ( 219) 329 85.9 6.7e-17
XP_011529320 (OMIM: 300191) PREDICTED: tetraspanin ( 157) 305 80.1 2.7e-15
NP_001265669 (OMIM: 300191) tetraspanin-6 isoform ( 157) 305 80.1 2.7e-15
NP_001265670 (OMIM: 300191) tetraspanin-6 isoform ( 157) 305 80.1 2.7e-15
NP_848657 (OMIM: 610120) tetraspanin-33 [Homo sapi ( 283) 306 80.6 3.4e-15
XP_006716023 (OMIM: 610120) PREDICTED: tetraspanin ( 282) 302 79.6 6.6e-15
XP_006718286 (OMIM: 176807,600623) PREDICTED: CD82 ( 267) 297 78.4 1.4e-14
NP_002222 (OMIM: 176807,600623) CD82 antigen isofo ( 267) 297 78.4 1.4e-14
XP_011519215 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 292 77.1 2.4e-14
XP_011519214 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 292 77.1 2.4e-14
NP_001244329 (OMIM: 155740) CD63 antigen isoform D ( 156) 289 76.3 3.6e-14
NP_001244330 (OMIM: 155740) CD63 antigen isoform D ( 156) 289 76.3 3.6e-14
NP_001765 (OMIM: 151523) leukocyte antigen CD37 is ( 281) 285 75.6 1e-13
>>NP_005715 (OMIM: 613134) tetraspanin-3 isoform 1 [Homo (253 aa)
initn: 1703 init1: 1703 opt: 1703 Z-score: 2168.9 bits: 408.9 E(85289): 4.5e-114
Smith-Waterman score: 1703; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 NCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRD
190 200 210 220 230 240
250
pF1KB4 PAYELLITGGTYA
:::::::::::::
NP_005 PAYELLITGGTYA
250
>>XP_016877346 (OMIM: 613134) PREDICTED: tetraspanin-3 i (214 aa)
initn: 1294 init1: 1294 opt: 1294 Z-score: 1650.3 bits: 312.7 E(85289): 3.5e-85
Smith-Waterman score: 1294; 100.0% identity (100.0% similar) in 192 aa overlap (62-253:23-214)
40 50 60 70 80 90
pF1KB4 AYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILL
::::::::::::::::::::::::::::::
XP_016 MWEPMSSSLMMTMTTSLKMCTRALLFIIGLIGCCATIRESRCGLATFVIILL
10 20 30 40 50
100 110 120 130 140 150
pF1KB4 LVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIH
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB4 NYSDWENTDWFKETKNQSVPLSCCRETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NYSDWENTDWFKETKNQSVPLSCCRETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMH
120 130 140 150 160 170
220 230 240 250
pF1KB4 VIWAALAFAAIQLLGMLCACIVLCRRSRDPAYELLITGGTYA
::::::::::::::::::::::::::::::::::::::::::
XP_016 VIWAALAFAAIQLLGMLCACIVLCRRSRDPAYELLITGGTYA
180 190 200 210
>>NP_001161884 (OMIM: 613134) tetraspanin-3 isoform 3 [H (189 aa)
initn: 1261 init1: 1133 opt: 1133 Z-score: 1446.5 bits: 274.8 E(85289): 7.9e-74
Smith-Waterman score: 1137; 74.7% identity (74.7% similar) in 253 aa overlap (1-253:1-189)
10 20 30 40 50 60
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAV
:::::::::::::::::::::
NP_001 MGQCGITSSKTVLVFLNLIFW---------------------------------------
10 20
70 80 90 100 110 120
pF1KB4 GALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQ
:::::::::::::::::::::::::::::::::::
NP_001 -------------------------FVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQ
30 40 50
130 140 150 160 170 180
pF1KB4 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAS
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB4 NCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRD
120 130 140 150 160 170
250
pF1KB4 PAYELLITGGTYA
:::::::::::::
NP_001 PAYELLITGGTYA
180
>>NP_944492 (OMIM: 613134) tetraspanin-3 isoform 2 [Homo (228 aa)
initn: 993 init1: 993 opt: 993 Z-score: 1267.6 bits: 241.9 E(85289): 7.2e-64
Smith-Waterman score: 1499; 90.1% identity (90.1% similar) in 253 aa overlap (1-253:1-228)
10 20 30 40 50 60
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_944 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQ
::::::::::::::::::::::::: ::::::::::
NP_944 GALLFIIGLIGCCATIRESRCGLAT-------------------------VENEVDRSIQ
70 80 90
130 140 150 160 170 180
pF1KB4 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_944 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB4 NCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_944 NCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRD
160 170 180 190 200 210
250
pF1KB4 PAYELLITGGTYA
:::::::::::::
NP_944 PAYELLITGGTYA
220
>>NP_001034579 (OMIM: 179620,602243,609057) CD151 antige (253 aa)
initn: 403 init1: 233 opt: 460 Z-score: 590.0 bits: 116.7 E(85289): 4e-26
Smith-Waterman score: 460; 29.9% identity (67.9% similar) in 234 aa overlap (4-231:11-242)
10 20 30 40 50
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIP
:: . : .: : :: :. . :: ... .:: .. . :
NP_001 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 AVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVEN
: .....:..... :..:::::..: : : . :.::..:. :... .:.:.: ....
NP_001 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 EVDRSIQKVY-KTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFK--ETKNQSV
:. .... .. : :. . .:.. :.: .:...:::: .: .::....:.. :. .. :
NP_001 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
180 190 200 210 220
pF1KB4 PLSCCRETASNCNGSLAHPSDLYAE--GCEALVVKKLQEIMMHVIWAA-LAFAAIQLLGM
: :::. ... : :. : :..: :: . . .:: ..:: :. ...: .:..::
NP_001 PDSCCKTVVALC-GQRDHASNIYKVEGGCITKLETFIQE-HLRVIGAVGIGIACVQVFGM
190 200 210 220 230
230 240 250
pF1KB4 LCACIVLCRRSRDPAYELLITGGTYA
. .:
NP_001 IFTCCLYRSLKLEHY
240 250
>>NP_620599 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 403 init1: 233 opt: 460 Z-score: 590.0 bits: 116.7 E(85289): 4e-26
Smith-Waterman score: 460; 29.9% identity (67.9% similar) in 234 aa overlap (4-231:11-242)
10 20 30 40 50
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIP
:: . : .: : :: :. . :: ... .:: .. . :
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 AVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVEN
: .....:..... :..:::::..: : : . :.::..:. :... .:.:.: ....
NP_620 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 EVDRSIQKVY-KTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFK--ETKNQSV
:. .... .. : :. . .:.. :.: .:...:::: .: .::....:.. :. .. :
NP_620 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
180 190 200 210 220
pF1KB4 PLSCCRETASNCNGSLAHPSDLYAE--GCEALVVKKLQEIMMHVIWAA-LAFAAIQLLGM
: :::. ... : :. : :..: :: . . .:: ..:: :. ...: .:..::
NP_620 PDSCCKTVVALC-GQRDHASNIYKVEGGCITKLETFIQE-HLRVIGAVGIGIACVQVFGM
190 200 210 220 230
230 240 250
pF1KB4 LCACIVLCRRSRDPAYELLITGGTYA
. .:
NP_620 IFTCCLYRSLKLEHY
240 250
>>NP_620598 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 403 init1: 233 opt: 460 Z-score: 590.0 bits: 116.7 E(85289): 4e-26
Smith-Waterman score: 460; 29.9% identity (67.9% similar) in 234 aa overlap (4-231:11-242)
10 20 30 40 50
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIP
:: . : .: : :: :. . :: ... .:: .. . :
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 AVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVEN
: .....:..... :..:::::..: : : . :.::..:. :... .:.:.: ....
NP_620 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 EVDRSIQKVY-KTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFK--ETKNQSV
:. .... .. : :. . .:.. :.: .:...:::: .: .::....:.. :. .. :
NP_620 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
180 190 200 210 220
pF1KB4 PLSCCRETASNCNGSLAHPSDLYAE--GCEALVVKKLQEIMMHVIWAA-LAFAAIQLLGM
: :::. ... : :. : :..: :: . . .:: ..:: :. ...: .:..::
NP_620 PDSCCKTVVALC-GQRDHASNIYKVEGGCITKLETFIQE-HLRVIGAVGIGIACVQVFGM
190 200 210 220 230
230 240 250
pF1KB4 LCACIVLCRRSRDPAYELLITGGTYA
. .:
NP_620 IFTCCLYRSLKLEHY
240 250
>>NP_004348 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 403 init1: 233 opt: 460 Z-score: 590.0 bits: 116.7 E(85289): 4e-26
Smith-Waterman score: 460; 29.9% identity (67.9% similar) in 234 aa overlap (4-231:11-242)
10 20 30 40 50
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIP
:: . : .: : :: :. . :: ... .:: .. . :
NP_004 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 AVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVEN
: .....:..... :..:::::..: : : . :.::..:. :... .:.:.: ....
NP_004 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 EVDRSIQKVY-KTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFK--ETKNQSV
:. .... .. : :. . .:.. :.: .:...:::: .: .::....:.. :. .. :
NP_004 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
180 190 200 210 220
pF1KB4 PLSCCRETASNCNGSLAHPSDLYAE--GCEALVVKKLQEIMMHVIWAA-LAFAAIQLLGM
: :::. ... : :. : :..: :: . . .:: ..:: :. ...: .:..::
NP_004 PDSCCKTVVALC-GQRDHASNIYKVEGGCITKLETFIQE-HLRVIGAVGIGIACVQVFGM
190 200 210 220 230
230 240 250
pF1KB4 LCACIVLCRRSRDPAYELLITGGTYA
. .:
NP_004 IFTCCLYRSLKLEHY
240 250
>>NP_004606 (OMIM: 300096,300210) tetraspanin-7 [Homo sa (249 aa)
initn: 422 init1: 145 opt: 456 Z-score: 585.0 bits: 115.8 E(85289): 7.6e-26
Smith-Waterman score: 456; 34.1% identity (63.8% similar) in 246 aa overlap (6-246:12-249)
10 20 30 40 50
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPA
:: ::.:.. ...:: .. :: ::.. .: : .. . : :
NP_004 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 VVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENE
:.:..:. . ..::.:: :: : : : ....: :::..:.:. . :.:.: ....
NP_004 YVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 VDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSC
:. ...::::. : :::.:.:::.: :::..::..: .. .: : ...: ::
NP_004 FLRTYTDAMQTYNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSC
120 130 140 150 160 170
180 190 200 210 220
pF1KB4 CRETASNCNGSLAHPSDLYA-----EGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLC
: . ..:: . : . : .:: ::.. .. : . .:...: ::.:::
NP_004 CMNE-TDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLL
180 190 200 210 220 230
230 240 250
pF1KB4 ACIVLCRRSRDPAYELLITGGTYA
:: : : ::..
NP_004 AC-CLSRFITANQYEMV
240
>>NP_003261 (OMIM: 300191) tetraspanin-6 isoform a [Homo (245 aa)
initn: 376 init1: 176 opt: 441 Z-score: 566.0 bits: 112.2 E(85289): 8.7e-25
Smith-Waterman score: 441; 32.2% identity (64.5% similar) in 242 aa overlap (6-246:14-245)
10 20 30 40 50
pF1KB4 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLI
:: :.::.. ..::: .. :: :: . .. ..: .... : .
NP_003 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 PAVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVE
: :.::.:......: .:: :: : : : ....: :::..:.:....:.:.: ...
NP_003 P-FVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIK
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 NEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPL
: . .:. : ::.:. : :.:.: .: :::::. .: :: .:....: .. :
NP_003 NSFKNNYEKALKQYNSTG-DYRSHAVDKIQNTLHCCGVTDYRDWTDTNYYSE---KGFPK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 SCCRETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCA-C
:::. .:. . . . ::: :. .. : : ... : .::.:.. : :
NP_003 SCCK--LEDCTPQ-RDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYC
180 190 200 210 220 230
240 250
pF1KB4 IVLCRRSRDPAYELLITGGTYA
: : . ::..
NP_003 --LSRAITNNQYEIV
240
253 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:11:20 2016 done: Sat Nov 5 06:11:21 2016
Total Scan time: 6.300 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]