FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4989, 261 aa
  1>>>pF1KB4989 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6304+/-0.00107; mu= 14.3133+/- 0.066
 mean_var=99.4695+/-19.630, 0's: 0 Z-trim(107.0): 50  B-trim: 299 in 1/48
 Lambda= 0.128597
 statistics sampled from 9283 (9314) to 9283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.286), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS6251.1 CALB1 gene_id:793|Hs108|chr8            ( 261) 1717 328.8 2.4e-90
CCDS10899.1 CALB2 gene_id:794|Hs108|chr16          ( 271) 1034 202.1 3.4e-52
CCDS4561.1 SCGN gene_id:10590|Hs108|chr6           ( 276)  561 114.3   9e-26


>>CCDS6251.1 CALB1 gene_id:793|Hs108|chr8                 (261 aa)
 initn: 1717 init1: 1717 opt: 1717  Z-score: 1735.6  bits: 328.8 E(32554): 2.4e-90
Smith-Waterman score: 1717; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB4 MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGLELSPEMKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGLELSPEMKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 FVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 FVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 FQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINNITTYKKNIMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 FQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINNITTYKKNIMA
              190       200       210       220       230       240

              250       260 
pF1KB4 LSDGGKLYRTDLALILCAGDN
       :::::::::::::::::::::
CCDS62 LSDGGKLYRTDLALILCAGDN
              250       260 

>>CCDS10899.1 CALB2 gene_id:794|Hs108|chr16               (271 aa)
 initn: 1227 init1: 702 opt: 1034  Z-score: 1050.5  bits: 202.1 E(32554): 3.4e-52
Smith-Waterman score: 1034; 58.7% identity (86.9% similar) in 259 aa overlap (5-258:10-267)

                    10        20        30        40        50     
pF1KB4      MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGL---
                .:. . .:::::.::: ::::::.::.:::::.:..:::..::: .:.   
CCDS10 MAGPQQQPPYLHLAELTASQFLEIWKHFDADGNGYIEGKELENFFQELEKARKGSGMMSK
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB4 --ELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKY
         ... .:: :...: . .:::: ..:::..::::::::: :: :.. :  :::..::::
CCDS10 SDNFGEKMKEFMQKYDKNSDGKIEMAELAQILPTEENFLLCFR-QHVGSSAEFMEAWRKY
               70        80        90       100        110         

              120       130       140       150       160       170
pF1KB4 DTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARL
       :::.::.::..:::.::.:::.:::.  :. :: :::. .:..:: :.:::: :.::.::
CCDS10 DTDRSGYIEANELKGFLSDLLKKANRPYDEPKLQEYTQTILRMFDLNGDGKLGLSEMSRL
     120       130       140       150       160       170         

              180       190       200       210       220       230
pF1KB4 LPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINN
       :::::::::::::.:. ..:::  : .::.: .:::::.::::::::: ::::....:..
CCDS10 LPVQENFLLKFQGMKLTSEEFNAIFTFYDKDRSGYIDEHELDALLKDLYEKNKKEMNIQQ
     180       190       200       210       220       230         

              240       250       260  
pF1KB4 ITTYKKNIMALSDGGKLYRTDLALILCAGDN 
       .:.:.:..:.:...::::: :: ..::.    
CCDS10 LTNYRKSVMSLAEAGKLYRKDLEIVLCSEPPM
     240       250       260       270 

>>CCDS4561.1 SCGN gene_id:10590|Hs108|chr6                (276 aa)
 initn: 352 init1: 352 opt: 561  Z-score: 576.2  bits: 114.3 E(32554): 9e-26
Smith-Waterman score: 561; 37.6% identity (66.5% similar) in 263 aa overlap (11-259:12-271)

                10        20        30            40        50     
pF1KB4  MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQ----NLIQELQQARKKAGLELS
                  . :. :...: .:::: .::.: :::.    .....:         .: 
CCDS45 MDSSREPTLGRLDAAGFWQVWQRFDADEKGYIEEKELDAFFLHMLMKLGTDDTVMKANLH
               10        20        30        40        50        60

          60        70        80         90        100       110   
pF1KB4 PEMKTFVDQYGQRDDGKIGIVELAHVLPTE-ENFLLLFRCQQ-LKSCEEFMKTWRKYDTD
          . :.       ::.: . ::: .. .: :::::::: .. : :  :::. :::::.:
CCDS45 KVKQQFMTTQDASKDGRIRMKELAGMFLSEDENFLLLFRRENPLDSSVEFMQIWRKYDAD
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB4 HSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPV
        :::: . ::.:::.::. . .:.....:: :::  :.:.:: :.::.:.:...::.: .
CCDS45 SSGFISAAELRNFLRDLFLHHKKAISEAKLEEYTGTMMKIFDRNKDGRLDLNDLARILAL
              130       140       150       160       170       180

           180       190            200       210       220        
pF1KB4 QENFLLKFQGIKMCGKE-----FNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDI
       ::::::.:. .  :. :     :.: :  :: . .: ..  :.:...::. :  . ... 
CCDS45 QENFLLQFK-MDACSTEERKRDFEKIFAYYDVSKTGALEGPEVDGFVKDMMELVQPSISG
               190       200       210       220       230         

      230       240          250       260    
pF1KB4 NNITTYKKNIMALSD---GGKLYRTDLALILCAGDN   
        ..  ... ..   :    ::. ...::  :: :     
CCDS45 VDLDKFREILLRHCDVNKDGKIQKSELA--LCLGLKINP
     240       250       260         270      




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:11:54 2016 done: Sat Nov  5 06:11:54 2016
 Total Scan time:  2.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]