Result of FASTA (ccds) for pF1KB4992
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4992, 281 aa
  1>>>pF1KB4992 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9590+/-0.000689; mu= 13.4749+/- 0.042
 mean_var=87.0540+/-17.082, 0's: 0 Z-trim(111.9): 7  B-trim: 0 in 0/51
 Lambda= 0.137461
 statistics sampled from 12720 (12727) to 12720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.391), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS1731.1 MAPRE3 gene_id:22924|Hs108|chr2         ( 281) 1909 387.7  5e-108
CCDS45851.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 284) 1142 235.6 3.1e-62
CCDS45850.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 315) 1142 235.6 3.4e-62
CCDS11910.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 327) 1142 235.6 3.5e-62
CCDS58619.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 274)  932 193.9   1e-49
CCDS13208.1 MAPRE1 gene_id:22919|Hs108|chr20       ( 268)  885 184.6 6.5e-47


>>CCDS1731.1 MAPRE3 gene_id:22924|Hs108|chr2              (281 aa)
 initn: 1909 init1: 1909 opt: 1909  Z-score: 2052.9  bits: 387.7 E(32554): 5e-108
Smith-Waterman score: 1909; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB4 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 PCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEH
              190       200       210       220       230       240

              250       260       270       280 
pF1KB4 ESENSPVISGIIGILYATEEGFAPPEDDEIEEHQQEDQDEY
       :::::::::::::::::::::::::::::::::::::::::
CCDS17 ESENSPVISGIIGILYATEEGFAPPEDDEIEEHQQEDQDEY
              250       260       270       280 

>>CCDS45851.1 MAPRE2 gene_id:10982|Hs108|chr18            (284 aa)
 initn: 1197 init1: 880 opt: 1142  Z-score: 1230.8  bits: 235.6 E(32554): 3.1e-62
Smith-Waterman score: 1142; 59.2% identity (83.0% similar) in 289 aa overlap (1-281:1-284)

               10        20        30        40        50        60
pF1KB4 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK
       :::::::::.:.:..::::..::::: . :::::.::::::::::::::::::::. :.:
CCDS45 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD
       ::::::::::::::::.:::.::.:.:::.:::::::::.::::..::::::::.:::::
CCDS45 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD
               70        80        90       100       110       120

              130       140       150           160       170      
pF1KB4 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQ----RTSPTGPKNMQTSGRLS
       ::.:.:. ::::::. :::.::.::::  ::   .  :     ..::.. :  .: .: :
CCDS45 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAA-KPGSTPSRPS
              130       140       150       160        170         

        180       190       200       210       220       230      
pF1KB4 NVAPPCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELI
       ..       ..  :: .. .. ..:...::.:. .:::...:.::::::::.:::.:::.
CCDS45 SAKRA----SSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELL
     180           190       200       210       220       230     

        240       250       260       270           280 
pF1KB4 CQEHESENSPVISGIIGILYATEEGFAPPEDDEIEE--HQQE--DQDEY
       :::: .::. ... .. ::::.::  .  :. : ::  :.:.  .:.::
CCDS45 CQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY
         240       250       260       270       280    

>>CCDS45850.1 MAPRE2 gene_id:10982|Hs108|chr18            (315 aa)
 initn: 1197 init1: 880 opt: 1142  Z-score: 1230.1  bits: 235.6 E(32554): 3.4e-62
Smith-Waterman score: 1142; 59.2% identity (83.0% similar) in 289 aa overlap (1-281:32-315)

                                             10        20        30
pF1KB4                               MAVNVYSTSVTSENLSRHDMLAWVNDSLHL
                                     :::::::::.:.:..::::..::::: . :
CCDS45 KQNRDQKCPVSQRNSSFQQPGRKPGCSSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KB4 NYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI
       ::::.::::::::::::::::::::. :.:::::::::::::::::.:::.::.:.:::.
CCDS45 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB4 IPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSK
       :::::::::.::::..::::::::.:::::::.:.:. ::::::. :::.::.::::  :
CCDS45 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
             130       140       150       160       170       180 

                  160       170       180       190       200      
pF1KB4 KLIGTAVPQ----RTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHETDAQILELN
       :   .  :     ..::.. :  .: .: :..       ..  :: .. .. ..:...::
CCDS45 KSHHANSPTAGAAKSSPAA-KPGSTPSRPSSAKRA----SSSGSASKSDKDLETQVIQLN
             190       200        210           220       230      

        210       220       230       240       250       260      
pF1KB4 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPE
       .:. .:::...:.::::::::.:::.:::.:::: .::. ... .. ::::.::  .  :
CCDS45 EQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTE
        240       250       260       270       280       290      

        270           280 
pF1KB4 DDEIEE--HQQE--DQDEY
       . : ::  :.:.  .:.::
CCDS45 EPEAEEQAHEQQPPQQEEY
        300       310     

>>CCDS11910.1 MAPRE2 gene_id:10982|Hs108|chr18            (327 aa)
 initn: 1197 init1: 880 opt: 1142  Z-score: 1229.9  bits: 235.6 E(32554): 3.5e-62
Smith-Waterman score: 1142; 59.2% identity (83.0% similar) in 289 aa overlap (1-281:44-327)

                                             10        20        30
pF1KB4                               MAVNVYSTSVTSENLSRHDMLAWVNDSLHL
                                     :::::::::.:.:..::::..::::: . :
CCDS11 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
            20        30        40        50        60        70   

               40        50        60        70        80        90
pF1KB4 NYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI
       ::::.::::::::::::::::::::. :.:::::::::::::::::.:::.::.:.:::.
CCDS11 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
            80        90       100       110       120       130   

              100       110       120       130       140       150
pF1KB4 IPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSK
       :::::::::.::::..::::::::.:::::::.:.:. ::::::. :::.::.::::  :
CCDS11 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
           140       150       160       170       180       190   

                  160       170       180       190       200      
pF1KB4 KLIGTAVPQ----RTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHETDAQILELN
       :   .  :     ..::.. :  .: .: :..       ..  :: .. .. ..:...::
CCDS11 KSHHANSPTAGAAKSSPAA-KPGSTPSRPSSAKRA----SSSGSASKSDKDLETQVIQLN
           200       210        220           230       240        

        210       220       230       240       250       260      
pF1KB4 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPE
       .:. .:::...:.::::::::.:::.:::.:::: .::. ... .. ::::.::  .  :
CCDS11 EQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTE
      250       260       270       280       290       300        

        270           280 
pF1KB4 DDEIEE--HQQE--DQDEY
       . : ::  :.:.  .:.::
CCDS11 EPEAEEQAHEQQPPQQEEY
      310       320       

>>CCDS58619.1 MAPRE2 gene_id:10982|Hs108|chr18            (274 aa)
 initn: 987 init1: 670 opt: 932  Z-score: 1005.9  bits: 193.9 E(32554): 1e-49
Smith-Waterman score: 932; 56.4% identity (81.2% similar) in 250 aa overlap (40-281:30-274)

      10        20        30        40        50        60         
pF1KB4 VTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEH
                                     .:::::::::::::::. :.::::::::::
CCDS58  MARTTTTSSRIITGPSFLSGSTQCAGSVPTGAAYCQFMDMLFPGCISLKKVKFQAKLEH
                10        20        30        40        50         

      70        80        90       100       110       120         
pF1KB4 EYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLA
       :::::::.:::.::.:.:::.:::::::::.::::..::::::::.:::::::.:.:. :
CCDS58 EYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEA
      60        70        80        90       100       110         

     130       140       150           160       170       180     
pF1KB4 RQGQDVAPPPNPGDQIFNKSKKLIGTAVPQ----RTSPTGPKNMQTSGRLSNVAPPCILR
       :::::. :::.::.::::  ::   .  :     ..::.. :  .: .: :..       
CCDS58 RQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAA-KPGSTPSRPSSAKRA----
     120       130       140       150        160       170        

         190       200       210       220       230       240     
pF1KB4 KNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENS
       ..  :: .. .. ..:...::.:. .:::...:.::::::::.:::.:::.:::: .::.
CCDS58 SSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQEND
          180       190       200       210       220       230    

         250       260       270           280 
pF1KB4 PVISGIIGILYATEEGFAPPEDDEIEE--HQQE--DQDEY
        ... .. ::::.::  .  :. : ::  :.:.  .:.::
CCDS58 DLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY
          240       250       260       270    

>>CCDS13208.1 MAPRE1 gene_id:22919|Hs108|chr20            (268 aa)
 initn: 1157 init1: 838 opt: 885  Z-score: 955.7  bits: 184.6 E(32554): 6.5e-47
Smith-Waterman score: 1159; 65.4% identity (81.6% similar) in 283 aa overlap (1-281:1-268)

               10        20        30        40        50        60
pF1KB4 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK
       ::::::::::::.::::::::::.:.::.:: :::::::::::::::::::::: . :.:
CCDS13 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD
       ::::::::::::.:::.:::.::.:::::::::.:::::::::::::.::::::::::::
CCDS13 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
               70        80        90       100       110       120

              130       140       150         160       170        
pF1KB4 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLI--GTAVPQRTSPTGPKNMQTSGRLSNV
       ::::.:. :::::..:  :.     .:: :: .  ..:.:::     : . : ..   . 
CCDS13 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQR-----PISTQRTAAAPK-
              130       140       150       160            170     

      180       190       200       210       220       230        
pF1KB4 APPCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQ
       : : ..:::: .. ::    : .  :: ::.  :::::. :::::::::.:::.::::::
CCDS13 AGPGVVRKNP-GVGNG----DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQ
          180            190       200       210       220         

      240       250       260       270       280 
pF1KB4 EHESENSPVISGIIGILYATEEGFAPPEDDEIEEHQQEDQDEY
       :.:.::.::.. :. :::::.:::. :.    :   ::.:.::
CCDS13 ENEGENDPVLQRIVDILYATDEGFVIPD----EGGPQEEQEEY
     230       240       250           260        




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:12:32 2016 done: Sat Nov  5 06:12:32 2016
 Total Scan time:  2.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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