FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4998, 221 aa
  1>>>pF1KB4998 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0420+/-0.000887; mu= 4.2570+/- 0.054
 mean_var=281.2864+/-59.665, 0's: 0 Z-trim(115.5): 157  B-trim: 824 in 1/53
 Lambda= 0.076472
 statistics sampled from 15870 (16063) to 15870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.493), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS11749.1 SRSF2 gene_id:6427|Hs108|chr17         ( 221) 1466 173.9 7.1e-44
CCDS73370.1 SRSF8 gene_id:10929|Hs108|chr11        ( 282)  772 97.5 9.2e-21


>>CCDS11749.1 SRSF2 gene_id:6427|Hs108|chr17              (221 aa)
 initn: 1466 init1: 1466 opt: 1466  Z-score: 901.2  bits: 173.9 E(32554): 7.1e-44
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
              130       140       150       160       170       180

              190       200       210       220 
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
       :::::::::::::::::::::::::::::::::::::::::
CCDS11 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
              190       200       210       220 

>>CCDS73370.1 SRSF8 gene_id:10929|Hs108|chr11             (282 aa)
 initn: 949 init1: 644 opt: 772  Z-score: 486.2  bits: 97.5 E(32554): 9.2e-21
Smith-Waterman score: 810; 60.6% identity (69.7% similar) in 254 aa overlap (1-213:1-253)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       :: :::::::.:: .:::::::::::::.::::::::::::::::::. .::  ::::::
CCDS73 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::.:::.::  ::::: :::::::::.:::::  :  .::.: :  :  :::::::::
CCDS73 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR-DLPRSRQGEPRGRSRGGGYGRRSR
               70        80        90        100       110         

                     130           140              150            
pF1KB4 S-------PRRRRRSRSR----SRSRSRSRSR-SRYSRSK------SRSR------TRSR
       :       ::::.:::::    :::::::: : ::::::       ::::      .:::
CCDS73 SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSR
     120       130       140       150       160       170         

        160                       170       180        190         
pF1KB4 SRST------------SKSRSAR----RSKSKSSSVSRSRSRSRSRSRS-RSPPPVSKRE
        : .            :.:: .:    ::.:::.: . ::: : :.: : :     :  .
CCDS73 YRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR
     180       190       200       210       220       230         

     200       210       220                      
pF1KB4 SKSRSRSKSPPKSPEEEGAVSS                     
       :.:::::.:  .::                             
CCDS73 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS
     240       250       260       270       280  




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:42:12 2016 done: Thu Nov  3 15:42:13 2016
 Total Scan time:  2.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]