Result of FASTA (omim) for
pF1KB5000
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5000, 204 aa
1>>>pF1KB5000 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5834+/-0.000325; mu= 17.7900+/- 0.020
mean_var=62.1581+/-12.438, 0's: 0 Z-trim(115.7): 12 B-trim: 0 in 0/50
Lambda= 0.162677
statistics sampled from 26248 (26259) to 26248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.308), width: 16
Scan time: 5.360
The best scores are: opt bits E(85289)
NP_001240309 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_001240311 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_001240312 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_002939 (OMIM: 604174,615550) 60S ribosomal prot ( 204) 1424 342.2 3.5e-94
NP_001240308 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_001240313 (OMIM: 604174,615550) 60S ribosomal p ( 145) 838 204.5 6.8e-53
>>NP_001240309 (OMIM: 604174,615550) 60S ribosomal prote (204 aa)
initn: 1424 init1: 1424 opt: 1424 Z-score: 1811.9 bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
130 140 150 160 170 180
190 200
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
190 200
>>NP_001240311 (OMIM: 604174,615550) 60S ribosomal prote (204 aa)
initn: 1424 init1: 1424 opt: 1424 Z-score: 1811.9 bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
130 140 150 160 170 180
190 200
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
190 200
>>NP_001240312 (OMIM: 604174,615550) 60S ribosomal prote (204 aa)
initn: 1424 init1: 1424 opt: 1424 Z-score: 1811.9 bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
130 140 150 160 170 180
190 200
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
190 200
>>NP_002939 (OMIM: 604174,615550) 60S ribosomal protein (204 aa)
initn: 1424 init1: 1424 opt: 1424 Z-score: 1811.9 bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
130 140 150 160 170 180
190 200
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
::::::::::::::::::::::::
NP_002 HHTIGGSRRAAWRRRNTLQLHRYR
190 200
>>NP_001240308 (OMIM: 604174,615550) 60S ribosomal prote (204 aa)
initn: 1424 init1: 1424 opt: 1424 Z-score: 1811.9 bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
130 140 150 160 170 180
190 200
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
190 200
>>NP_001240313 (OMIM: 604174,615550) 60S ribosomal prote (145 aa)
initn: 838 init1: 838 opt: 838 Z-score: 1070.6 bits: 204.5 E(85289): 6.8e-53
Smith-Waterman score: 838; 99.2% identity (100.0% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
.
NP_001 MESHSHSGGSAVGQSRLTATSVSRV
130 140
204 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:13:30 2016 done: Sat Nov 5 06:13:31 2016
Total Scan time: 5.360 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]