Result of FASTA (ccds) for
pF1KB5004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5004, 382 aa
1>>>pF1KB5004 382 - 382 aa - 382 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1229+/-0.000771; mu= 17.1385+/- 0.046
mean_var=62.4287+/-12.851, 0's: 0 Z-trim(107.9): 56 B-trim: 437 in 1/48
Lambda= 0.162324
statistics sampled from 9825 (9881) to 9825 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.304), width: 16
Scan time: 2.750
The best scores are: opt bits E(32554)
CCDS4880.1 KLHDC3 gene_id:116138|Hs108|chr6 ( 382) 2731 648.1 3.8e-186
CCDS33606.1 LZTR1 gene_id:8216|Hs108|chr22 ( 840) 280 74.3 4.4e-13
CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16 ( 520) 259 69.3 9e-12
CCDS55341.1 RABEPK gene_id:10244|Hs108|chr9 ( 321) 256 68.5 9.8e-12
CCDS6862.1 RABEPK gene_id:10244|Hs108|chr9 ( 372) 247 66.4 4.8e-11
>>CCDS4880.1 KLHDC3 gene_id:116138|Hs108|chr6 (382 aa)
initn: 2731 init1: 2731 opt: 2731 Z-score: 3455.5 bits: 648.1 E(32554): 3.8e-186
Smith-Waterman score: 2731; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)
10 20 30 40 50 60
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
310 320 330 340 350 360
370 380
pF1KB5 RWELNAMTTNSNISRPIVSSHG
::::::::::::::::::::::
CCDS48 RWELNAMTTNSNISRPIVSSHG
370 380
>>CCDS33606.1 LZTR1 gene_id:8216|Hs108|chr22 (840 aa)
initn: 281 init1: 128 opt: 280 Z-score: 348.3 bits: 74.3 E(32554): 4.4e-13
Smith-Waterman score: 301; 29.5% identity (55.6% similar) in 241 aa overlap (113-336:52-278)
90 100 110 120 130 140
pF1KB5 VLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFT-PRVSGTVPGARDGHSACVLGKIMY
:.: : . : . :. :.. . .:
CCDS33 SKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPCDEFVGARRSKHTVVAYKDAIY
30 40 50 60 70 80
150 160 170 180 190 200
pF1KB5 IFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRADR
.::: ... . ::. ..:.. .: : :.: : :::.. :: :.:::: .
CCDS33 VFGG--DNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGYT--
90 100 110 120 130
210 220 230 240 250
pF1KB5 FGPFHSNNEIYCNRIRVFDTR--TEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY--
: ..::... :. .:. . : : . :: .: .:.: :. .:.::.::
CCDS33 -GDIYSNSNLK-NKNDLFEYKFATGQWTEWKIEGRLPVARSAHGATVYSDKLWIFAGYDG
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB5 NARLNRHFHDLWK--FNPVSFT-WKKIEPKGKGPCPRRRQCC----CIVGDKIVLFGGTS
::::: :.: .. .: :... .:. : : .:: . ::. .:.: :
CCDS33 NARLN----DMWTIGLQDRELTCWEEVAQSGEIP-P---SCCNFPVAVCRDKMFVFSGQS
200 210 220 230 240
320 330 340 350 360
pF1KB5 PSPEEGLGDEFDLIDHS-----DLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELN
. . .:.. :.. :.: ::
CCDS33 GAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTL
250 260 270 280 290 300
370 380
pF1KB5 AMTTNSNISRPIVSSHG
CCDS33 PNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKKSRDVFGL
310 320 330 340 350 360
>>CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16 (520 aa)
initn: 169 init1: 112 opt: 259 Z-score: 324.9 bits: 69.3 E(32554): 9e-12
Smith-Waterman score: 259; 28.6% identity (57.6% similar) in 203 aa overlap (140-332:78-271)
110 120 130 140 150 160
pF1KB5 VNTHKWFTPRVSGTVPGARDGHSACVLGKIMYIFGG--YEQQADCFSNDIHKLDTSTMTW
. .::: .. : . :... .: ::
CCDS10 AKRTQTVELPCPPPSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTW
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB5 TLICTKGSPARWRDFHSATML---GSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTE
: . . : : : :.:... :....::::. :. .... . . . :. :.
CCDS10 TKVDIPSPPPR-RCAHQAVVVPQGGGQLWVFGGE---FASPNGEQFYHYKDLWVLHLATK
110 120 130 140 150 160
230 240 250 260 270 280
pF1KB5 AWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYN--ARLNRHFHDLWKFNPVSFTWKKIE
.: . : : :: .: ... .: .:::.. .: ...:.. :: .:::.:.
CCDS10 TWEQVKSTGG-PSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLS
170 180 190 200 210 220
290 300 310 320 330
pF1KB5 PKGKGPCPRRRQCCCIVGDK--IVLFGGTSPSPEEGLGDEFDL-IDHSDLHILDFSPSLK
:.: :: :: : : . ::..:: : .. . . : :::. .:
CCDS10 PSGTGPTPRS-GCQMSVTPQGGIVVYGGYS---KQRVKKDVDKGTRHSDMFLLKPEDGRE
230 240 250 260 270
340 350 360 370 380
pF1KB5 TLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG
CCDS10 DKWVWTRMNPSGVKPTPRSGFSVAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDAT
280 290 300 310 320 330
>>CCDS55341.1 RABEPK gene_id:10244|Hs108|chr9 (321 aa)
initn: 203 init1: 112 opt: 256 Z-score: 324.2 bits: 68.5 E(32554): 9.8e-12
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:18-213)
90 100 110 120 130
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
:.: : : : :: ::: :
CCDS55 MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
10 20 30 40
140 150 160 170 180 190
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
::. .: :: . . . :: :.: .: : ::: . . : : :: :.. .:...:::
CCDS55 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
:: ..: . . . ....:::. : .: : ::.: :..: . . .
CCDS55 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
110 120 130 140 150
260 270 280 290 300 310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
:.: :: . .: . :: .. .. :.:..: : .: . .: .. .::: .
CCDS55 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
:.
CCDS55 PAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHE
220 230 240 250 260 270
>>CCDS6862.1 RABEPK gene_id:10244|Hs108|chr9 (372 aa)
initn: 242 init1: 112 opt: 247 Z-score: 311.8 bits: 66.4 E(32554): 4.8e-11
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)
10 20 30 40 50
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
.:. :: .... ::: .. .
CCDS68 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
.: .. .: : :: :.. . : . ..:: :.. : : : ... .
CCDS68 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
80 90 100 110 120
120 130 140 150 160
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
:. : ::.:.. :. : : :. ..:. .:.::: :. :. .. .: .:..:.::.
CCDS68 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
: :.: : : . :..... :: : ::: ....: : . : . :
CCDS68 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
190 200 210 220 230
230 240 250 260 270 280
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
:: . : : .::: ... ..:::::.. . ..... : .. :
CCDS68 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
: . ::.
CCDS68 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
300 310 320 330 340 350
382 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:14:10 2016 done: Sat Nov 5 06:14:10 2016
Total Scan time: 2.750 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]