FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5014, 417 aa
  1>>>pF1KB5014 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4592+/-0.00107; mu= -0.3150+/- 0.065
 mean_var=292.8178+/-58.088, 0's: 0 Z-trim(113.0): 21  B-trim: 0 in 0/53
 Lambda= 0.074951
 statistics sampled from 13652 (13666) to 13652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.42), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS12288.1 CALR gene_id:811|Hs108|chr19           ( 417) 2915 328.6   7e-90
CCDS12344.1 CALR3 gene_id:125972|Hs108|chr19       ( 384)  951 116.2 5.6e-26


>>CCDS12288.1 CALR gene_id:811|Hs108|chr19                (417 aa)
 initn: 2915 init1: 2915 opt: 2915  Z-score: 1727.1  bits: 328.6 E(32554): 7e-90
Smith-Waterman score: 2915; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 HIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDK
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 QDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAKDEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAKDEL
              370       380       390       400       410       

>>CCDS12344.1 CALR3 gene_id:125972|Hs108|chr19            (384 aa)
 initn: 1289 init1: 878 opt: 951  Z-score: 579.8  bits: 116.2 E(32554): 5.6e-26
Smith-Waterman score: 1312; 52.4% identity (76.8% similar) in 370 aa overlap (14-383:14-362)

               10        20        30        40        50        60
pF1KB5 MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDE
                    : ::  .:::.:.::::. : .::..: . : ::.: :::::::: .
CCDS12 MARALVQLWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQT
       ::::::::.:..::::.:: :.::::::.:::.:.::::::..::::::.:.:: ..:: 
CCDS12 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN
       ...: :.: :::::::::   ::::::...:.:    .: :::: : ::::::::.::: 
CCDS12 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPE
       .:.::::....::::.: ::..   ::  .:  ::  :: :..:     :.: .::.:  
CCDS12 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESK--DW-EQTK-----DNKAQDWEK--
              190       200       210          220            230  

              250       260       270       280       290       300
pF1KB5 HIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYS
       :. : ...:  ::. ..::.:  :..:.: :.   ::. :    .: .:.: .. : .: 
CCDS12 HFLDASTSKQSDWNGDLDGDWPAPMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYL
              240       250       260       270           280      

              310       320       330       340       350       360
pF1KB5 PDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDK
        . ..  ..:.:..::.::::.:::::::::::.:: ::..::. ::: ::. :..:   
CCDS12 TQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREM---
        290       300       310       320       330       340      

              370       380       390       400       410       
pF1KB5 QDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAKDEL
           . .. .:: :: .:::: :                                  
CCDS12 ----DAIQAKEEMKKAREEEEEELLSGKINRHEHYFNQFHRRNEL            
               350       360       370       380                




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:46:03 2016 done: Thu Nov  3 15:46:03 2016
 Total Scan time:  3.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]