FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5017, 338 aa
  1>>>pF1KB5017 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9588+/-0.000752; mu= 4.5770+/- 0.045
 mean_var=154.3972+/-31.327, 0's: 0 Z-trim(114.1): 10  B-trim: 0 in 0/52
 Lambda= 0.103218
 statistics sampled from 14724 (14731) to 14724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.453), width:  16
 Scan time:  2.940

The best scores are:                                      opt bits E(32554)
CCDS9791.1 ZFP36L1 gene_id:677|Hs108|chr14         ( 338) 2302 354.0   1e-97
CCDS1811.1 ZFP36L2 gene_id:678|Hs108|chr2          ( 494)  674 111.7 1.3e-24
CCDS12534.2 ZFP36 gene_id:7538|Hs108|chr19         ( 332)  509 87.0 2.4e-17


>>CCDS9791.1 ZFP36L1 gene_id:677|Hs108|chr14              (338 aa)
 initn: 2302 init1: 2302 opt: 2302  Z-score: 1867.8  bits: 354.0 E(32554): 1e-97
Smith-Waterman score: 2302; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB5 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
              250       260       270       280       290       300

              310       320       330        
pF1KB5 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
       ::::::::::::::::::::::::::::::::::::::
CCDS97 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
              310       320       330        

>>CCDS1811.1 ZFP36L2 gene_id:678|Hs108|chr2               (494 aa)
 initn: 941 init1: 552 opt: 674  Z-score: 555.2  bits: 111.7 E(32554): 1.3e-24
Smith-Waterman score: 737; 49.8% identity (64.2% similar) in 285 aa overlap (11-230:10-290)

               10        20        30        40                50  
pF1KB5 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR
                 .:. . ::: .: :   :    . .::.::::::...        :: ::
CCDS18  MSTTLLSAFYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR
                10         20           30        40        50     

                     60                 70                     80  
pF1KB5 HSVT--------LPSS-----KF----HQNQLLSSLKGEPA-------P------ALSSR
       ::..         ::      ::    . ..  :.  : :.       :      :: ..
CCDS18 HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK
          60        70        80        90       100       110     

             90          100          110       120       130      
pF1KB5 DSRFRDRSFSEGGER---LLPTQKQP---GGGQVNSSRYKTELCRPFEENGACKYGDKCQ
       ...::::::::.:.:   ::  :.:    ::.:.::.::::::::::::.:.::::.:::
CCDS18 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ
         120       130       140       150       160       170     

        140       150       160       170       180          190   
pF1KB5 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL--AGAR-DLSA
       ::::.::::::::::::::::::::::::::::::::::::::.:::    .::  :: :
CCDS18 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA
         180       190       200       210       220       230     

                         200       210           220       230     
pF1KB5 --------------DRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPPILSAD
                      ::.:.::.::.::::.     .   .  ::::::: ::::     
CCDS18 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS
         240       250       260       270       280       290     

         240       250       260       270       280       290     
pF1KB5 DLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSP
                                                                   
CCDS18 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS
         300       310       320       330       340       350     

>>CCDS12534.2 ZFP36 gene_id:7538|Hs108|chr19              (332 aa)
 initn: 494 init1: 377 opt: 509  Z-score: 425.0  bits: 87.0 E(32554): 2.4e-17
Smith-Waterman score: 530; 40.2% identity (56.0% similar) in 266 aa overlap (95-337:90-332)

           70        80        90       100       110       120    
pF1KB5 NQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFE
                                     : .: :.  .: . ... ::::::::: : 
CCDS12 LPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFS
      60        70        80        90       100       110         

          130       140       150       160       170       180    
pF1KB5 ENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRA
       :.: :.:: :::::::. :::. .::::::::::. :.  : :::: :::::::  :  :
CCDS12 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA
     120       130       140       150       160       170         

          190       200       210        220               230     
pF1KB5 LAGARDLSADRPRLQHSFSFAGFPSAAATAAAT-GLLD--------SPTSITPPP---IL
         :        : :..:.::.:.::.  :.    ::          ::.:  :::    :
CCDS12 APG------HPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL
     180             190       200       210       220       230   

            240       250       260       270       280       290  
pF1KB5 SADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSP
       : . . ..:  : .  .:              :.  : ::     : :            
CCDS12 SPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGG-----LVRT-----------
           240       250       260       270                       

            300       310       320                  330        
pF1KB5 PSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNS-----------RRLPIFSRLSISDD
       :: :.  :: . : .::.:: .:::::... .           ::::::.:.:.:. 
CCDS12 PSVQSLGSDPDEY-ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE 
       280       290        300       310       320       330   




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:46:35 2016 done: Thu Nov  3 15:46:35 2016
 Total Scan time:  2.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]