FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5029, 548 aa
  1>>>pF1KB5029 548 - 548 aa - 548 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0533+/-0.000413; mu= 11.2795+/- 0.026
 mean_var=143.8211+/-27.741, 0's: 0 Z-trim(115.4): 2  B-trim: 0 in 0/53
 Lambda= 0.106946
 statistics sampled from 25859 (25860) to 25859 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.303), width:  16
 Scan time: 10.290

The best scores are:                                      opt bits E(85289)
NP_003744 (OMIM: 603915) eukaryotic translation in ( 548) 3725 586.9 5.5e-167


>>NP_003744 (OMIM: 603915) eukaryotic translation initia  (548 aa)
 initn: 3725 init1: 3725 opt: 3725  Z-score: 3118.9  bits: 586.9 E(85289): 5.5e-167
Smith-Waterman score: 3725; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KB5 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ILPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 IATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 NLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEE
              490       500       510       520       530       540

               
pF1KB5 EEEEEEET
       ::::::::
NP_003 EEEEEEET
               




548 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:47:52 2016 done: Thu Nov  3 15:47:54 2016
 Total Scan time: 10.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]