FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5061, 472 aa
  1>>>pF1KB5061 472 - 472 aa - 472 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2543+/-0.00109; mu= 17.6824+/- 0.065
 mean_var=61.0692+/-11.994, 0's: 0 Z-trim(101.9): 17  B-trim: 0 in 0/52
 Lambda= 0.164121
 statistics sampled from 6700 (6709) to 6700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.206), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS6273.1 CPQ gene_id:10404|Hs108|chr8            ( 472) 3077 737.6 6.7e-213


>>CCDS6273.1 CPQ gene_id:10404|Hs108|chr8                 (472 aa)
 initn: 3077 init1: 3077 opt: 3077  Z-score: 3935.8  bits: 737.6 E(32554): 6.7e-213
Smith-Waterman score: 3077; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)

               10        20        30        40        50        60
pF1KB5 MKFLIFAFFGGVHLLSLCSGKAICKNGISKRTFEEIKEEIASCGDVAKAIINLAVYGKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MKFLIFAFFGGVHLLSLCSGKAICKNGISKRTFEEIKEEIASCGDVAKAIINLAVYGKAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NRSYERLALLVDTVGPRLSGSKNLEKAIQIMYQNLQQDGLEKVHLEPVRIPHWERGEESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 NRSYERLALLVDTVGPRLSGSKNLEKAIQIMYQNLQQDGLEKVHLEPVRIPHWERGEESA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VMLEPRIHKIAILGLGSSIGTPPEGITAEVLVVTSFDELQRRASEARGKIVVYNQPYINY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VMLEPRIHKIAILGLGSSIGTPPEGITAEVLVVTSFDELQRRASEARGKIVVYNQPYINY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SRTVQYRTQGAVEAAKVGALASLIRSVASFSIYSPHTGIQEYQDGVPKIPTACITVEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SRTVQYRTQGAVEAAKVGALASLIRSVASFSIYSPHTGIQEYQDGVPKIPTACITVEDAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 MMSRMASHGIKIVIQLKMGAKTYPDTDSFNTVAEITGSKYPEQVVLVSGHLDSWDVGQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MMSRMASHGIKIVIQLKMGAKTYPDTDSFNTVAEITGSKYPEQVVLVSGHLDSWDVGQGA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 MDDGGGAFISWEALSLIKDLGLRPKRTLRLVLWTAEEQGGVGAFQYYQLHKVNISNYSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MDDGGGAFISWEALSLIKDLGLRPKRTLRLVLWTAEEQGGVGAFQYYQLHKVNISNYSLV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 MESDAGTFLPTGLQFTGSEKARAIMEEVMSLLQPLNITQVLSHGEGTDINFWIQAGVPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MESDAGTFLPTGLQFTGSEKARAIMEEVMSLLQPLNITQVLSHGEGTDINFWIQAGVPGA
              370       380       390       400       410       420

              430       440       450       460       470  
pF1KB5 SLLDDLYKYFFFHHSHGDTMTVMDPKQMNVAAAVWAVVSYVVADMEEMLPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLLDDLYKYFFFHHSHGDTMTVMDPKQMNVAAAVWAVVSYVVADMEEMLPRS
              430       440       450       460       470  




472 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:18:23 2016 done: Sat Nov  5 06:18:24 2016
 Total Scan time:  3.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]