FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5072, 616 aa
  1>>>pF1KB5072 616 - 616 aa - 616 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3927+/-0.000405; mu= 11.8574+/- 0.026
 mean_var=146.7429+/-30.506, 0's: 0 Z-trim(116.2): 1  B-trim: 33 in 1/56
 Lambda= 0.105876
 statistics sampled from 27155 (27156) to 27155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.318), width:  16
 Scan time: 11.490

The best scores are:                                      opt bits E(85289)
NP_002936 (OMIM: 179835) replication protein A 70  ( 616) 4040 629.0 1.4e-179


>>NP_002936 (OMIM: 179835) replication protein A 70 kDa   (616 aa)
 initn: 4040 init1: 4040 opt: 4040  Z-score: 3345.0  bits: 629.0 E(85289): 1.4e-179
Smith-Waterman score: 4040; 99.8% identity (100.0% similar) in 616 aa overlap (1-616:1-616)

               10        20        30        40        50        60
pF1KB5 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDASGKVVTATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_002 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR
              550       560       570       580       590       600

              610      
pF1KB5 EYGRRLVMSIRRSALM
       ::::::::::::::::
NP_002 EYGRRLVMSIRRSALM
              610      




616 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:53:39 2016 done: Thu Nov  3 15:53:41 2016
 Total Scan time: 11.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]