FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5099, 770 aa
  1>>>pF1KB5099 770 - 770 aa - 770 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1823+/-0.00104; mu= 20.5998+/- 0.063
 mean_var=64.3337+/-12.790, 0's: 0 Z-trim(103.0): 36  B-trim: 0 in 0/50
 Lambda= 0.159902
 statistics sampled from 7179 (7194) to 7179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.221), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS10898.1 CMTR2 gene_id:55783|Hs108|chr16        ( 770) 5287 1229.2       0
CCDS4835.1 CMTR1 gene_id:23070|Hs108|chr6          ( 835)  320 83.3 1.7e-15


>>CCDS10898.1 CMTR2 gene_id:55783|Hs108|chr16             (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6584.7  bits: 1229.2 E(32554):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS10 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS10 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>CCDS4835.1 CMTR1 gene_id:23070|Hs108|chr6               (835 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 391.6  bits: 83.3 E(32554): 1.7e-15
Smith-Waterman score: 320; 29.8% identity (60.5% similar) in 228 aa overlap (143-361:276-491)

            120       130       140       150       160       170  
pF1KB5 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
                                     .: .::.:    ..:.  ..     .: :.
CCDS48 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
         250       260       270       280           290           

            180       190        200          210       220        
pF1KB5 TLNPYHEANDDLMMIMDDRLIANT-LHWWYFGP---DNTGDIMTLKFLTGLQNFI---SS
        ..   .. .:.   ..:   :.. :   :.:    :. :::   . .....::.   ..
CCDS48 GFGMTLKGPNDFK--LEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTD
        300         310       320       330       340       350    

         230       240       250       260       270       280     
pF1KB5 MATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSI
          ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :.
CCDS48 RKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSV
          360       370       380       390       400       410    

         290       300       310       320        330       340    
pF1KB5 NLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRK
       .:.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...  
CCDS48 GLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNT
          420       430       440       450       460        470   

          350        360       370       380       390       400   
pF1KB5 ALFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQY
           . :.:   .:  ::                                          
CCDS48 DSDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRK
           480       490       500       510       520       530   




770 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:16:17 2016 done: Thu Nov  3 22:16:18 2016
 Total Scan time:  3.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]