(Circular) (Six-base) MAPSORT of: pF1KB5101.seq Check: 7750 from: 1 to: 6260 pF1KB5101 6260 bp With 182 enzymes: SgfI * June 20, 2008 10:24 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 640 640 Size: 6260 AatII G_ACGT'C Cuts at: 1112 1112 Size: 6260 AccI GT'mk_AC Cuts at: 395 1202 1208 1565 3150 3298 395 Size: 807 6 357 1585 148 3357 Fragments arranged by size: 3357 1585 807 357 148 6 Acc65I G'GTAC_C Cuts at: 3276 3276 Size: 6260 AclI AA'CG_TT Cuts at: 6100 6100 Size: 6260 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 717 1729 3019 4085 4517 4870 5532 717 Size: 1012 1290 1066 432 353 662 1445 Fragments arranged by size: 1445 1290 1066 1012 662 432 353 AflIII A'CryG_T Cuts at: 1710 3612 5412 5693 1710 Size: 1902 1800 281 2277 Fragments arranged by size: 2277 1902 1800 281 AhdI GACnn_n'nnGTC Cuts at: 2581 2581 Size: 6260 AleI CACnn'nnGTG Cuts at: 3061 3061 Size: 6260 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 404 404 Size: 6260 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2482 2514 2482 Size: 32 6228 AlwNI CAG_nnn'CTG Cuts at: 807 1434 1443 1827 2209 2664 2832 3565 5003 Size: 627 9 384 382 455 168 733 1438 Cuts at: 5003 807 Size: 2064 Fragments arranged by size: 2064 1438 733 627 455 384 382 168 9 ApaI G_GGCC'C Cuts at: 163 272 1402 2882 163 Size: 109 1130 1480 3541 Fragments arranged by size: 3541 1480 1130 109 ApaLI G'TGCA_C Cuts at: 429 5098 429 Size: 4669 1591 ApoI r'AATT_y Cuts at: 442 662 946 1894 3264 5613 5869 442 Size: 220 284 948 1370 2349 256 833 Fragments arranged by size: 2349 1370 948 833 284 256 220 AseI AT'TA_AT Cuts at: 20 20 Size: 6260 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6260 AvaI C'yCGr_G Cuts at: 264 273 847 1847 2543 2758 2817 2875 3280 Size: 9 574 1000 696 215 59 58 405 Cuts at: 3280 264 Size: 3244 Fragments arranged by size: 3244 1000 696 574 405 215 59 58 9 AvrII C'CTAG_G Cuts at: 921 3144 921 Size: 2223 4037 BamHI G'GATC_C Cuts at: 2754 3285 2754 Size: 531 5729 BanI G'GyrC_C Cuts at: 167 412 628 1146 2167 3205 3276 3690 3938 Size: 245 216 518 1021 1038 71 414 248 Cuts at: 3938 3973 167 Size: 35 2454 Fragments arranged by size: 2454 1038 1021 518 414 248 245 216 71 35 BanII G_rGCy'C Cuts at: 163 272 280 552 1238 1350 1402 1417 1848 Size: 109 8 272 686 112 52 15 431 Cuts at: 1848 2603 2876 2882 3274 4304 163 Size: 755 273 6 392 1030 2119 Fragments arranged by size: 2119 1030 755 686 431 392 273 272 112 109 52 15 8 6 BbeI G_GCGC'C Cuts at: 171 2171 3694 3942 171 Size: 2000 1523 248 2489 Fragments arranged by size: 2489 2000 1523 248 BbsI GAAGACnn'nnnn_ Cuts at: 974 2054 974 Size: 1080 5180 BbvCI CC'TCA_GC Cuts at: 2410 2410 Size: 6260 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 245 279 1838 1872 245 Size: 34 1559 34 4633 Fragments arranged by size: 4633 1559 34 34 BciVI GTATCCnnnnn_n' Cuts at: 919 4158 5214 6260 919 Size: 3239 1056 1046 919 Fragments arranged by size: 3239 1056 1046 919 BclI T'GATC_A Cuts at: 857 3780 857 Size: 2923 3337 BglI GCCn_nnn'nGGC Cuts at: 728 1283 1345 2176 728 Size: 555 62 831 4812 Fragments arranged by size: 4812 831 555 62 BglII A'GATC_T Cuts at: 1871 2027 3775 5812 1871 Size: 156 1748 2037 2319 Fragments arranged by size: 2319 2037 1748 156 BlpI GC'TnA_GC Cuts at: 2180 3224 3372 2180 Size: 1044 148 5068 Fragments arranged by size: 5068 1044 148 Bme1580I G_kGCm'C Cuts at: 163 272 433 631 989 1149 1402 1788 2882 Size: 109 161 198 358 160 253 386 1094 Cuts at: 2882 3885 3978 5102 163 Size: 1003 93 1124 1321 Fragments arranged by size: 1321 1124 1094 1003 386 358 253 198 161 160 109 93 BmgBI CAC'GTC Cuts at: 2442 2442 Size: 6260 BmrI ACTGGGnnnn_n' Cuts at: 1951 2518 3472 3553 3888 6032 1951 Size: 567 954 81 335 2144 2179 Fragments arranged by size: 2179 2144 954 567 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1924 4627 1924 Size: 2703 3557 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 490 688 1785 2186 2232 2767 3221 490 Size: 198 1097 401 46 535 454 3529 Fragments arranged by size: 3529 1097 535 454 401 198 46 Bpu10I CC'TnA_GC Cuts at: 1681 2254 2410 2471 1681 Size: 573 156 61 5470 Fragments arranged by size: 5470 573 156 61 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3214 3436 4315 5029 5327 3214 Size: 222 879 714 298 4147 Fragments arranged by size: 4147 879 714 298 222 BsaI GGTCTCn'nnnn_ Cuts at: 1357 1493 2540 5964 1357 Size: 136 1047 3424 1653 Fragments arranged by size: 3424 1653 1047 136 BsaAI yAC'GTr Cuts at: 3613 3613 Size: 6260 BsaBI GATnn'nnATC Cuts at: 6 1870 1921 3112 3774 5811 6 Size: 1864 51 1191 662 2037 455 Fragments arranged by size: 2037 1864 1191 662 455 51 BsaHI Gr'CG_yC Cuts at: 121 168 1109 2168 3095 3691 3939 4641 6137 Size: 47 941 1059 927 596 248 702 1496 Cuts at: 6137 121 Size: 244 Fragments arranged by size: 1496 1059 941 927 702 596 248 244 47 BsaWI w'CCGG_w Cuts at: 3449 3970 4648 5059 5206 5480 3449 Size: 521 678 411 147 274 4229 Fragments arranged by size: 4229 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 502 532 2184 2214 2482 2512 2836 2866 3179 Size: 30 1652 30 268 30 324 30 313 Cuts at: 3179 3209 502 Size: 30 3553 Fragments arranged by size: 3553 1652 324 313 268 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 514 549 1505 1648 2578 514 Size: 35 956 143 930 4196 Fragments arranged by size: 4196 956 930 143 35 BseYI C'CCAG_C Cuts at: 155 252 698 1221 1367 1410 2617 3685 4443 Size: 97 446 523 146 43 1207 1068 758 Cuts at: 4443 5108 5516 155 Size: 665 408 899 Fragments arranged by size: 1207 1068 899 758 665 523 446 408 146 97 43 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 166 2697 2755 2869 166 Size: 2531 58 114 3557 Fragments arranged by size: 3557 2531 114 58 BsiEI CG_ry'CG Cuts at: 104 313 3802 3848 5078 104 Size: 209 3489 46 1230 1286 Fragments arranged by size: 3489 1286 1230 209 46 BsiHKAI G_wGCw'C Cuts at: 348 433 2603 2876 2957 3274 4052 4242 5102 Size: 85 2170 273 81 317 778 190 860 Cuts at: 5102 348 Size: 1506 Fragments arranged by size: 2170 1506 860 778 317 273 190 85 81 BsmI GAATG_Cn' Cuts at: 2127 2127 Size: 6260 Bsp1286I G_dGCh'C Cuts at: 163 272 280 348 433 552 631 989 1149 Size: 109 8 68 85 119 79 358 160 Cuts at: 1149 1238 1350 1402 1417 1788 1848 2603 2876 Size: 89 112 52 15 371 60 755 273 Cuts at: 2876 2882 2957 3274 3885 3978 4052 4242 4304 Size: 6 75 317 611 93 74 190 62 Cuts at: 4304 5102 163 Size: 798 1321 Fragments arranged by size: 1321 798 755 611 371 358 317 273 190 160 119 112 109 93 89 85 79 75 74 68 62 60 52 15 8 6 BspHI T'CATG_A Cuts at: 4692 4692 Size: 6260 BspMI ACCTGCnnnn'nnnn_ Cuts at: 640 1220 2078 2586 3310 3524 3826 4207 640 Size: 580 858 508 724 214 302 381 2693 Fragments arranged by size: 2693 858 724 580 508 381 302 214 BsrBI CCG'CTC Cuts at: 50 686 1638 4552 4606 6090 6255 50 Size: 636 952 2914 54 1484 165 55 Fragments arranged by size: 2914 1484 952 636 165 55 54 BsrDI GCAATG_nn' Cuts at: 1518 3073 4172 1518 Size: 1555 1099 3606 Fragments arranged by size: 3606 1555 1099 BsrFI r'CCGG_y Cuts at: 308 1225 4258 4439 308 Size: 917 3033 181 2129 Fragments arranged by size: 3033 2129 917 181 BsrGI T'GTAC_A Cuts at: 584 2987 584 Size: 2403 3857 BssSI C'ACGA_G Cuts at: 4531 5239 4531 Size: 708 5552 BstAPI GCAn_nnn'nTGC Cuts at: 3637 3637 Size: 6260 BstBI TT'CG_AA Cuts at: 4621 4621 Size: 6260 BstEII G'GTnAC_C Cuts at: 2190 2481 2190 Size: 291 5969 BstYI r'GATC_y Cuts at: 1 803 1871 2027 2405 2754 2828 3285 3752 Size: 802 1068 156 378 349 74 457 467 Cuts at: 3752 3775 4110 4356 4662 4674 4760 5812 1 Size: 23 335 246 306 12 86 1052 449 Fragments arranged by size: 1068 1052 802 467 457 449 378 349 335 306 246 156 86 74 23 12 BstZ17I GTA'TAC Cuts at: 1566 1566 Size: 6260 Bsu36I CC'TnA_GG Cuts at: 1184 1879 1975 2507 1184 Size: 695 96 532 4937 Fragments arranged by size: 4937 695 532 96 BtgI C'CryG_G Cuts at: 107 552 623 1968 2462 3212 107 Size: 445 71 1345 494 750 3155 Fragments arranged by size: 3155 1345 750 494 445 71 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1908 4210 4391 4554 1908 Size: 2302 181 163 3614 Fragments arranged by size: 3614 2302 181 163 BtsI GCAGTG_nn' Cuts at: 532 1100 2519 2980 3503 532 Size: 568 1419 461 523 3289 Fragments arranged by size: 3289 1419 568 523 461 DraI TTT'AAA Cuts at: 3259 3259 Size: 6260 DraIII CAC_nnn'GTG Cuts at: 144 428 144 Size: 284 5976 DrdI GACnn_nn'nnGTC Cuts at: 126 3966 5310 126 Size: 3840 1344 1076 Fragments arranged by size: 3840 1344 1076 EaeI y'GGCC_r Cuts at: 310 756 1097 1260 1275 1337 3053 3845 4019 Size: 446 341 163 15 62 1716 792 174 Cuts at: 4019 4410 4437 5782 310 Size: 391 27 1345 788 Fragments arranged by size: 1716 1345 792 788 446 391 341 174 163 62 27 15 EagI C'GGCC_G Cuts at: 310 3845 310 Size: 3535 2725 EarI CTCTTCn'nnn_ Cuts at: 4283 4493 4283 Size: 210 6050 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 4468 5210 5356 6070 4468 Size: 742 146 714 4658 Fragments arranged by size: 4658 742 714 146 EcoICRI GAG'CTC Cuts at: 2601 2874 3272 2601 Size: 273 398 5589 Fragments arranged by size: 5589 398 273 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 490 688 717 1729 1785 2186 2232 2767 3019 Size: 198 29 1012 56 401 46 535 252 Cuts at: 3019 3221 4085 4517 4870 5532 490 Size: 202 864 432 353 662 1218 Fragments arranged by size: 1218 1012 864 662 535 432 401 353 252 202 198 56 46 29 EcoNI CCTnn'n_nnAGG Cuts at: 868 1315 868 Size: 447 5813 EcoO109I rG'GnC_Cy Cuts at: 159 160 249 268 269 1308 1398 1538 2568 Size: 1 89 19 1 1039 90 140 1030 Cuts at: 2568 2575 2614 2742 2821 2879 3399 159 Size: 7 39 128 79 58 520 3020 Fragments arranged by size: 3020 1039 1030 520 140 128 90 89 79 58 39 19 7 1 1 EcoRI G'AATT_C Cuts at: 662 946 3264 662 Size: 284 2318 3658 Fragments arranged by size: 3658 2318 284 EcoRV GAT'ATC Cuts at: 1519 1519 Size: 6260 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2958 4279 2958 Size: 1321 4939 FspI TGC'GCA Cuts at: 4041 4041 Size: 6260 HaeII r_GCGC'y Cuts at: 171 2171 3694 3942 5172 5943 171 Size: 2000 1523 248 1230 771 488 Fragments arranged by size: 2000 1523 1230 771 488 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 502 534 1027 1059 1894 1926 2567 2599 2813 Size: 32 493 32 835 32 641 32 214 Cuts at: 2813 2845 2889 2921 4102 4132 4134 4164 502 Size: 32 44 32 1181 30 2 30 2598 Fragments arranged by size: 2598 1181 835 641 493 214 44 32 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 3299 3299 Size: 6260 HindIII A'AGCT_T Cuts at: 3172 3172 Size: 6260 KasI G'GCGC_C Cuts at: 167 2167 3690 3938 167 Size: 2000 1523 248 2489 Fragments arranged by size: 2489 2000 1523 248 KpnI G_GTAC'C Cuts at: 3280 3280 Size: 6260 MluI A'CGCG_T Cuts at: 5693 5693 Size: 6260 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 2732 5019 5203 2732 Size: 2287 184 3789 Fragments arranged by size: 3789 2287 184 MscI TGG'CCA Cuts at: 1262 1339 3055 4021 1262 Size: 77 1716 966 3501 Fragments arranged by size: 3501 1716 966 77 MslI CAynn'nnrTG Cuts at: 2059 2594 3061 3211 4249 4376 2059 Size: 535 467 150 1038 127 3943 Fragments arranged by size: 3943 1038 535 467 150 127 MspA1I CmG'CkG Cuts at: 150 180 189 590 698 879 1749 2076 2651 Size: 30 9 401 108 181 870 327 575 Cuts at: 2651 2949 3030 3061 3371 3685 4045 4829 5074 Size: 298 81 31 310 314 360 784 245 Cuts at: 5074 150 Size: 1336 Fragments arranged by size: 1336 870 784 575 401 360 327 314 310 298 245 181 108 81 31 30 9 NaeI GCC'GGC Cuts at: 1227 4441 1227 Size: 3214 3046 NarI GG'CG_CC Cuts at: 168 2168 3691 3939 168 Size: 2000 1523 248 2489 Fragments arranged by size: 2489 2000 1523 248 NcoI C'CATG_G Cuts at: 107 552 3212 107 Size: 445 2660 3155 Fragments arranged by size: 3155 2660 445 NdeI CA'TA_TG Cuts at: 3201 3201 Size: 6260 NgoMIV G'CCGG_C Cuts at: 1225 4439 1225 Size: 3214 3046 NspI r_CATG'y Cuts at: 575 3313 3813 5416 575 Size: 2738 500 1603 1419 Fragments arranged by size: 2738 1603 1419 500 PasI CC'CwG_GG Cuts at: 218 1302 2236 218 Size: 1084 934 4242 Fragments arranged by size: 4242 1084 934 PciI A'CATG_T Cuts at: 5412 5412 Size: 6260 PflMI CCAn_nnn'nTGG Cuts at: 2154 2336 2664 2154 Size: 182 328 5750 Fragments arranged by size: 5750 328 182 PfoI T'CCnGG_A Cuts at: 467 2369 467 Size: 1902 4358 PmeI GTTT'AAAC Cuts at: 3259 3259 Size: 6260 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2482 2514 4706 4738 2482 Size: 32 2192 32 4004 Fragments arranged by size: 4004 2192 32 32 PpuMI rG'GwC_Cy Cuts at: 1308 1538 2568 2575 2821 1308 Size: 230 1030 7 246 4747 Fragments arranged by size: 4747 1030 246 230 7 PspOMI G'GGCC_C Cuts at: 159 268 1398 2878 159 Size: 109 1130 1480 3541 Fragments arranged by size: 3541 1480 1130 109 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 988 1020 2089 2121 988 Size: 32 1069 32 5127 Fragments arranged by size: 5127 1069 32 32 PstI C_TGCA'G Cuts at: 383 884 1217 1439 1648 2075 2912 2975 3307 Size: 501 333 222 209 427 837 63 332 Cuts at: 3307 3992 383 Size: 685 2651 Fragments arranged by size: 2651 837 685 501 427 333 332 222 209 63 PvuI CG_AT'CG Cuts at: 104 104 Size: 6260 PvuII CAG'CTG Cuts at: 150 590 698 879 1749 2076 2651 3030 3061 Size: 440 108 181 870 327 575 379 31 Cuts at: 3061 3685 4045 150 Size: 624 360 2365 Fragments arranged by size: 2365 870 624 575 440 379 360 327 181 108 31 RsrII CG'GwC_CG Cuts at: 4455 4455 Size: 6260 SacI G_AGCT'C Cuts at: 2603 2876 3274 2603 Size: 273 398 5589 Fragments arranged by size: 5589 398 273 SalI G'TCGA_C Cuts at: 3297 3297 Size: 6260 SapI GCTCTTCn'nnn_ Cuts at: 4283 4493 4283 Size: 210 6050 SbfI CC_TGCA'GG Cuts at: 3307 3307 Size: 6260 ScaI AGT'ACT Cuts at: 260 2215 5777 260 Size: 1955 3562 743 Fragments arranged by size: 3562 1955 743 SexAI A'CCwGG_T Cuts at: 863 863 Size: 6260 SfcI C'TryA_G Cuts at: 33 379 880 1213 1435 1644 2071 2908 2971 Size: 346 501 333 222 209 427 837 63 Cuts at: 2971 3303 3988 4956 5147 33 Size: 332 685 968 191 1146 Fragments arranged by size: 1146 968 837 685 501 427 346 333 332 222 209 191 63 SfoI GGC'GCC Cuts at: 169 2169 3692 3940 169 Size: 2000 1523 248 2489 Fragments arranged by size: 2489 2000 1523 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6260 SmaI CCC'GGG Cuts at: 275 3282 275 Size: 3007 3253 SmlI C'TyrA_G Cuts at: 1847 3229 3415 4330 5044 5306 1847 Size: 1382 186 915 714 262 2801 Fragments arranged by size: 2801 1382 915 714 262 186 SpeI A'CTAG_T Cuts at: 67 67 Size: 6260 SphI G_CATG'C Cuts at: 575 3313 3813 575 Size: 2738 500 3022 Fragments arranged by size: 3022 2738 500 StyI C'CwwG_G Cuts at: 107 350 406 552 723 921 1940 2610 3074 Size: 243 56 146 171 198 1019 670 464 Cuts at: 3074 3144 3212 3394 3748 107 Size: 70 68 182 354 2619 Fragments arranged by size: 2619 1019 670 464 354 243 198 182 171 146 70 68 56 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 231 363 1235 2101 2146 2249 3843 3976 4435 Size: 132 872 866 45 103 1594 133 459 Cuts at: 4435 4644 231 Size: 209 1847 Fragments arranged by size: 1847 1594 872 866 459 209 133 132 103 45 TatI w'GTAC_w Cuts at: 258 512 584 2213 2987 5775 258 Size: 254 72 1629 774 2788 743 Fragments arranged by size: 2788 1629 774 743 254 72 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 281 313 917 949 2184 2216 2836 2868 5777 Size: 32 604 32 1235 32 620 32 2909 Cuts at: 5777 5809 281 Size: 32 732 Fragments arranged by size: 2909 1235 732 620 604 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 325 4057 325 Size: 3732 2528 XbaI T'CTAG_A Cuts at: 3291 3291 Size: 6260 XcmI CCAnnnn_n'nnnnTGG Cuts at: 587 1270 2531 3755 587 Size: 683 1261 1224 3092 Fragments arranged by size: 3092 1261 1224 683 XhoI C'TCGA_G Cuts at: 1847 1847 Size: 6260 XmaI C'CCGG_G Cuts at: 273 3280 273 Size: 3007 3253 ZraI GAC'GTC Cuts at: 1110 1110 Size: 6260 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflIII AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstYI BstZ17I Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PspOMI PsrI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SpeI SphI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI ZraI Enzymes that do not cut: AfeI AflII AgeI AscI BaeI BfrBI BmtI BsiWI BsmBI BspEI BssHII BstXI ClaI CspCI FseI FspAI HpaI MfeI NheI NotI NruI NsiI PacI PmlI PshAI PsiI PspXI SacII SanDI SfiI SgrAI SnaBI SrfI SspI StuI SwaI XmnI