FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5104, 548 aa
  1>>>pF1KB5104 548 - 548 aa - 548 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5375+/-0.00107; mu= 12.3247+/- 0.065
 mean_var=80.5017+/-16.220, 0's: 0 Z-trim(104.0): 14  B-trim: 0 in 0/51
 Lambda= 0.142946
 statistics sampled from 7656 (7659) to 7656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.235), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS7838.1 GTF2H1 gene_id:2965|Hs108|chr11         ( 548) 3556 743.4 1.6e-214


>>CCDS7838.1 GTF2H1 gene_id:2965|Hs108|chr11              (548 aa)
 initn: 3556 init1: 3556 opt: 3556  Z-score: 3964.9  bits: 743.4 E(32554): 1.6e-214
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
              490       500       510       520       530       540

               
pF1KB5 SRRLMKKT
       ::::::::
CCDS78 SRRLMKKT
               




548 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:02:54 2016 done: Thu Nov  3 16:02:54 2016
 Total Scan time:  3.200 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]